Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0015760

Physical Location & Seq

Genomic Coordinates Forward (+)

55748213 .. 55750076

Gene Structure 1864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034843

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGACAGAGGCTACTTGTTATATGAATGTGATGAATAGCGGAATCAGAGCACTAGTGAAAGCCATTCACTCTACCCACGCAGTCCATTCTCTATCCCACGCAGTCCATTCTCTATCTCTCCGGCGGAGCCTCTCAGTTGGGAGATCTTATCTTTATGATAGGTTGACCAAAACCGTATCGAAAGGAAACAGGTACCAGTTTTTGGTGTGGAAGGAAGGGACTCATTCATTTTCCATAGGAGTCACAGAAGTCATTAATATAAATCTCTTGATAGAACTAAGTGCTGATGACGTAGATTATGTCTACCAAAGGAGTCCTGGGAAAATCTTAAGCATCAATATCCCAACATTTGAGGCCCTTACTCAATCTGGAACTGCTACAATCACAGCAAAGAATACTGGTGAAGTGGAAGCATCCTATTGCTTAACGTTTGATTGCTCAAGTGATGTCACCCTTATGGAGGTACTTTTGCCCCTGCAGCTCATGTATTTAGACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045026 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061024 GO:0061025 GO:0061936 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAP2-GCS1

Protein Analysis

167

Amino Acids

18.42

Weight (kDa)

6.28

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAP2-GCS1	PF10699	69 - 153	2.1e-24	Male gamete fusion factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015760)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0036251
rosa_laevigata	RLG00000012092 RLG00000033373 RLG00000034843
rosa_roxburghii	Rroxscaffold_1G00008550 Rroxscaffold_1G00033210 Rroxscaffold_1G00033710 Rroxscaffold_1G00061800 Rroxscaffold_2G00110640 Rroxscaffold_2G00117290 Rroxscaffold_4G00286660 Rroxscaffold_4G00305950 Rroxscaffold_5G00345320 Rroxscaffold_5G00353480
rosa_samantha	Rh1DG239400 Rh7CG119800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	192
AccB1I	GGYRCC	1 cut(s)	192
AccB7I	CCANNNNNTGG	1 cut(s)	202
AccI	GTMKAC	1 cut(s)	303
AciI	CCGC	2 cut(s)	39, 124
AclI	AACGTT	1 cut(s)	428
AfaI	GTAC	2 cut(s)	194, 465
AfiI	CCNNNNNNNGG	2 cut(s)	202, 460
AflII	CTTAAG	1 cut(s)	328
AhlI	ACTAGT	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	1 cut(s)	481
AluI	AGCT	1 cut(s)	481
Alw21I	GWGCWC	1 cut(s)	52
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	1 cut(s)	478
AseI	ATTAAT	1 cut(s)	255
Asp718I	GGTACC	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	355
AsuHPI	GGTGA	2 cut(s)	413, 442
BanI	GGYRCC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	490
BciT130I	CCWGG	1 cut(s)	318
BcuI	ACTAGT	1 cut(s)	52
BfaI	CTAG	1 cut(s)	53
BfmI	CTRYAG	1 cut(s)	476
BfrI	CTTAAG	1 cut(s)	328
BglII	AGATCT	1 cut(s)	143
BisI	GCNGC	1 cut(s)	479
BlsI	GCNGC	1 cut(s)	480
Bme1390I	CCNGG	1 cut(s)	318
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	2 cut(s)	128, 194
BmrFI	CCNGG	1 cut(s)	318
BmsI	GCATC	2 cut(s)	342, 422
BpuEI	CTTGAG	1 cut(s)	424
BsaJI	CCNNGG	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 460
Bse1I	ACTGG	2 cut(s)	196, 403
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	1 cut(s)	413
BseLI	CCNNNNNNNGG	2 cut(s)	202, 460
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	2 cut(s)	196, 403
BseXI	GCAGC	1 cut(s)	490
BshFI	GGCC	1 cut(s)	356
BshNI	GGYRCC	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	2 cut(s)	202, 460
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	1 cut(s)	143
BspACI	CCGC	2 cut(s)	39, 124
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	1 cut(s)	146
BspLI	GGNNCC	2 cut(s)	128, 194
BspMAI	CTGCAG	1 cut(s)	480
BspT107I	GGYRCC	1 cut(s)	192
BspTI	CTTAAG	1 cut(s)	328
BsrI	ACTGG	2 cut(s)	196, 403
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	175
BstAFI	CTTAAG	1 cut(s)	328
BstDEI	CTNAG	2 cut(s)	133, 278
BstENI	CCTNNNNNAGG	1 cut(s)	458
BstF5I	GGATG	1 cut(s)	413
BstKTI	GATC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	1 cut(s)	478
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	316
BstSFI	CTRYAG	1 cut(s)	476
BstV1I	GCAGC	1 cut(s)	490
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	413
Cfr13I	GGNCC	1 cut(s)	355
Csp6I	GTAC	2 cut(s)	193, 464
CviAII	CATG	1 cut(s)	484
CviJI	RGCY	5 cut(s)	11, 62, 129, 356, 481
CviKI_1	RGCY	5 cut(s)	11, 62, 129, 356, 481
CviQI	GTAC	2 cut(s)	193, 464
DdeI	CTNAG	2 cut(s)	133, 278
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
EciI	GGCGGA	1 cut(s)	139
EcoNI	CCTNNNNNAGG	1 cut(s)	458
EcoO109I	RGGNCCY	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	316
FaeI	CATG	1 cut(s)	487
FaiI	YATR	8 cut(s)	21, 23, 156, 236, 260, 300, 458, 485
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	1 cut(s)	483
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	1 cut(s)	479
FokI	GGATG	1 cut(s)	400
Fsp4HI	GCNGC	1 cut(s)	479
FspBI	CTAG	1 cut(s)	53
GluI	GCNGC	1 cut(s)	479
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	1 cut(s)	121
Hin1II	CATG	1 cut(s)	487
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HinfI	GANTC	4 cut(s)	42, 220, 240, 313
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	2 cut(s)	413, 442
Hpy166II	GTNNAC	2 cut(s)	165, 304
Hpy188I	TCNGA	1 cut(s)	47
Hpy188III	TCNNGA	2 cut(s)	268, 369
Hpy8I	GTNNAC	2 cut(s)	165, 304
HpyAV	CCTTC	2 cut(s)	205, 209
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	2 cut(s)	291, 428
HpyCH4V	TGCA	1 cut(s)	478
HpyF10VI	GCNNNNNNNGC	1 cut(s)	478
HpyF3I	CTNAG	2 cut(s)	133, 278
HpySE526I	ACGT	2 cut(s)	291, 428
Hsp92II	CATG	1 cut(s)	487
KpnI	GGTACC	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	143
LmnI	GCTCC	1 cut(s)	126
LpnPI	CCDG	8 cut(s)	134, 175, 209, 303, 330, 354, 384, 488
Lsp1109I	GCAGC	1 cut(s)	490
LweI	GCATC	2 cut(s)	342, 422
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	2 cut(s)	291, 428
MaeIII	GTNAC	2 cut(s)	241, 448
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	1 cut(s)	52
MlyI	GAGTC	3 cut(s)	214, 249, 322
MnlI	CCTC	3 cut(s)	140, 346, 454
MseI	TTAA	3 cut(s)	255, 329, 425
MslI	CAYNNNNRTG	1 cut(s)	455
MspCI	CTTAAG	1 cut(s)	328
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	478
NdeII	GATC	1 cut(s)	143
NlaIII	CATG	1 cut(s)	487
NlaIV	GGNNCC	2 cut(s)	128, 194
NmuCI	GTSAC	2 cut(s)	241, 448
PfeI	GAWTC	1 cut(s)	42
PflMI	CCANNNNNTGG	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	480
PleI	GAGTC	3 cut(s)	214, 248, 321
PpsI	GAGTC	3 cut(s)	214, 248, 321
PshBI	ATTAAT	1 cut(s)	255
Psp1406I	AACGTT	1 cut(s)	428
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	128, 194
PspPI	GGNCC	1 cut(s)	355
PstI	CTGCAG	1 cut(s)	480
PsuI	RGATCY	1 cut(s)	143
RsaI	GTAC	2 cut(s)	194, 465
RsaNI	GTAC	2 cut(s)	193, 464
RseI	CAYNNNNRTG	1 cut(s)	455
SaqAI	TTAA	3 cut(s)	255, 329, 425
SatI	GCNGC	1 cut(s)	479
Sau3AI	GATC	1 cut(s)	143
Sau96I	GGNCC	1 cut(s)	355
SchI	GAGTC	3 cut(s)	214, 249, 322
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	6 cut(s)	164, 194, 294, 431, 465, 483
SfaNI	GCATC	2 cut(s)	342, 422
SfcI	CTRYAG	1 cut(s)	476
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	2 cut(s)	328, 439
SmoI	CTYRAG	2 cut(s)	328, 439
SpeI	ACTAGT	1 cut(s)	52
SsiI	CCGC	2 cut(s)	39, 124
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	316
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	2 cut(s)	294, 431
TaqI	TCGA	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	3 cut(s)	255, 329, 425
Tru9I	TTAA	3 cut(s)	255, 329, 425
TseFI	GTSAC	2 cut(s)	241, 448
TseI	GCWGC	1 cut(s)	478
Tsp45I	GTSAC	2 cut(s)	241, 448
TspDTI	ATGAA	3 cut(s)	38, 47, 216
Van91I	CCANNNNNTGG	1 cut(s)	202
Vha464I	CTTAAG	1 cut(s)	328
VspI	ATTAAT	1 cut(s)	255
XagI	CCTNNNNNAGG	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	303
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.