Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015760

Physical Location & Seq

Genomic Coordinates Forward (+)

35035535 .. 35048061

Gene Structure 12527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00110640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCTCGGAATGTGGTTCTCTTGGTCCACTTTTTCACGGGACTCGTTCTTATGGTTATCTCATTCATTATGGAGCTTGTCGTGTATTATATGCGAGATAGTACAATTCCGATTCGAAGAACAAGAGAGCAAGACGTGCTCGAGCTAGCTCGGTTCGAAGATATGGAAGAAAGACACCCAGTGCCTGTTCGAAGAAATTCATCCGAAATGGCAATGAGCCTGCAGTTGGGTTCTAGGTCCATCGTCGTTACGGTGGTTGTGAGGGAGAAGGGTGCTGTTGTGGACGTGTTTTCGACCAAGTGTTGGTATAACGGCGGGGAAGAGCTTGGGGTGTCTGGAATACTCGGGAAGGAACAAGAGATGTGGGAGACTATCGATAAGGGCTTGCGGTGCTGCATGTTTGGGTTTCTCAAAGAAAAGAAATCACCAAAAGTATTTAAGCTTCACGGAGATCTCCTAGCCCAAGTCCCGGAACTCCGGGGAAGCAAACAAGAGCAGCTTCGATCGGTTCGTTCTTTCATTGGCACCGGCGACTTGGCGAAGCGGAGCAGCGGGCGAGAGGGAGGCGCCGAAGTCAACGCAGCTGGCTTGAGGACTGTGTTACCAGTTCGAAGTTCCACCTTGGCCATTTCTTTGACAGAGCCGTGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000814 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010008 GO:0010154 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0032182 GO:0032501 GO:0032502 GO:0032509 GO:0032511 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0036452 GO:0042886 GO:0043130 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0061458 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0090351 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

EAP30 Vps36_ESCRT-II

Protein Analysis

217

Amino Acids

24.36

Weight (kDa)

9.05

Isoelectric Point (pI)

59.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015760)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0036251
rosa_laevigata	RLG00000012092 RLG00000033373 RLG00000034843
rosa_roxburghii	Rroxscaffold_1G00008550 Rroxscaffold_1G00033210 Rroxscaffold_1G00033710 Rroxscaffold_1G00061800 Rroxscaffold_2G00110640 Rroxscaffold_2G00117290 Rroxscaffold_4G00286660 Rroxscaffold_4G00305950 Rroxscaffold_5G00345320 Rroxscaffold_5G00353480
rosa_samantha	Rh1DG239400 Rh7CG119800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	524, 566
AccB7I	CCANNNNNTGG	1 cut(s)	303
AciI	CCGC	4 cut(s)	315, 388, 544, 552
AcoI	YGGCCR	1 cut(s)	624
AcsI	RAATTY	1 cut(s)	196
AcyI	GRCGYC	1 cut(s)	567
AdeI	CACNNNGTG	1 cut(s)	181
AfaI	GTAC	1 cut(s)	103
AfiI	CCNNNNNNNGG	3 cut(s)	226, 303, 469
AflIII	ACRYGT	1 cut(s)	285
AjiI	CACGTC	2 cut(s)	136, 286
AluBI	AGCT	7 cut(s)	76, 145, 149, 325, 442, 499, 584
AluI	AGCT	7 cut(s)	76, 145, 149, 325, 442, 499, 584
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	362
AlwNI	CAGNNNCTG	1 cut(s)	185
Ama87I	CYCGRG	2 cut(s)	140, 344
AoxI	GGCC	1 cut(s)	624
ApeKI	GCWGC	4 cut(s)	393, 496, 549, 581
ApoI	RAATTY	1 cut(s)	196
Asp700I	GAANNNNTTC	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	569
AspS9I	GGNCC	2 cut(s)	25, 237
AsuC2I	CCSGG	2 cut(s)	470, 479
AsuHPI	GGTGA	1 cut(s)	417
AsuII	TTCGAA	4 cut(s)	115, 156, 190, 610
AsuNHI	GCTAGC	1 cut(s)	145
AvaI	CYCGRG	2 cut(s)	140, 344
AvaII	GGWCC	2 cut(s)	25, 237
BalI	TGGCCA	1 cut(s)	626
BanI	GGYRCC	2 cut(s)	524, 566
BarI	GAAGNNNNNNTAC	2 cut(s)	426, 458
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	4 cut(s)	380, 508, 561, 593
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	2 cut(s)	328, 628
BcnI	CCSGG	2 cut(s)	470, 479
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	3 cut(s)	146, 234, 458
BfmI	CTRYAG	1 cut(s)	221
BfoI	RGCGCY	1 cut(s)	570
BglII	AGATCT	1 cut(s)	451
BisI	GCNGC	4 cut(s)	394, 497, 550, 582
BlsI	GCNGC	4 cut(s)	395, 498, 551, 583
Bme1390I	CCNGG	2 cut(s)	470, 479
Bme18I	GGWCC	2 cut(s)	25, 237
BmeT110I	CYCGRG	2 cut(s)	140, 344
BmgBI	CACGTC	2 cut(s)	136, 286
BmgT120I	GGNCC	2 cut(s)	25, 237
BmiI	GGNNCC	2 cut(s)	526, 568
BmrFI	CCNGG	2 cut(s)	470, 479
BmrI	ACTGGG	1 cut(s)	173
BmtI	GCTAGC	1 cut(s)	149
BmuI	ACTGGG	1 cut(s)	173
Bpu14I	TTCGAA	4 cut(s)	115, 156, 190, 610
BpuEI	CTTGAG	1 cut(s)	610
BpuMI	CCSGG	2 cut(s)	470, 479
Bsa29I	ATCGAT	1 cut(s)	375
BsaHI	GRCGYC	1 cut(s)	567
BsaJI	CCNNGG	3 cut(s)	478, 621, 644
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 303, 469
Bse118I	RCCGGY	1 cut(s)	527
Bse1I	ACTGG	2 cut(s)	179, 605
Bse3DI	GCAATG	1 cut(s)	219
BseCI	ATCGAT	1 cut(s)	375
BseDI	CCNNGG	3 cut(s)	478, 621, 644
BseGI	GGATG	1 cut(s)	200
BseLI	CCNNNNNNNGG	3 cut(s)	226, 303, 469
BseMI	GCAATG	1 cut(s)	219
BseNI	ACTGG	2 cut(s)	179, 605
BseXI	GCAGC	4 cut(s)	380, 508, 561, 593
Bsh1285I	CGRYCG	1 cut(s)	506
BshFI	GGCC	1 cut(s)	626
BshNI	GGYRCC	2 cut(s)	524, 566
BshVI	ATCGAT	1 cut(s)	375
BsiEI	CGRYCG	1 cut(s)	506
BsiHKAI	GWGCWC	1 cut(s)	141
BsiHKCI	CYCGRG	2 cut(s)	140, 344
BsiSI	CCGG	3 cut(s)	470, 478, 528
BslFI	GGGAC	2 cut(s)	54, 452
BslI	CCNNNNNNNGG	3 cut(s)	226, 303, 469
BsmAI	GTCTC	1 cut(s)	362
BsmFI	GGGAC	2 cut(s)	54, 452
BsnI	GGCC	1 cut(s)	626
BsoBI	CYCGRG	2 cut(s)	140, 344
Bsp119I	TTCGAA	4 cut(s)	115, 156, 190, 610
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	451, 503
BspACI	CCGC	4 cut(s)	315, 388, 544, 552
BspANI	GGCC	1 cut(s)	626
BspDI	ATCGAT	1 cut(s)	375
BspLI	GGNNCC	2 cut(s)	526, 568
BspMAI	CTGCAG	1 cut(s)	225
BspOI	GCTAGC	1 cut(s)	149
BspQI	GCTCTTC	1 cut(s)	315
BspT104I	TTCGAA	4 cut(s)	115, 156, 190, 610
BspT107I	GGYRCC	2 cut(s)	524, 566
BsrDI	GCAATG	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	527
BsrI	ACTGG	2 cut(s)	179, 605
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	3 cut(s)	478, 621, 644
BssMI	GATC	2 cut(s)	451, 503
BssNI	GRCGYC	1 cut(s)	567
BssT1I	CCWWGG	1 cut(s)	621
Bst4CI	ACNGT	2 cut(s)	253, 598
Bst6I	CTCTTC	1 cut(s)	315
BstACI	GRCGYC	1 cut(s)	567
BstAPI	GCANNNNNTGC	1 cut(s)	136
BstBI	TTCGAA	4 cut(s)	115, 156, 190, 610
BstC8I	GCNNGC	5 cut(s)	147, 221, 386, 554, 586
BstDSI	CCRYGG	1 cut(s)	644
BstF5I	GGATG	1 cut(s)	200
BstH2I	RGCGCY	1 cut(s)	570
BstHHI	GCGC	1 cut(s)	569
BstKTI	GATC	2 cut(s)	454, 506
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	2 cut(s)	451, 503
BstMCI	CGRYCG	1 cut(s)	506
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 390
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	2 cut(s)	468, 477
BstSFI	CTRYAG	1 cut(s)	221
BstV1I	GCAGC	4 cut(s)	380, 508, 561, 593
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
Bsu15I	ATCGAT	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	626
BsuTUI	ATCGAT	1 cut(s)	375
BtgI	CCRYGG	1 cut(s)	644
BtrI	CACGTC	2 cut(s)	136, 286
BtsCI	GGATG	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	5 cut(s)	147, 221, 386, 554, 586
CaiI	CAGNNNCTG	1 cut(s)	185
CfoI	GCGC	1 cut(s)	569
Cfr10I	RCCGGY	1 cut(s)	527
Cfr13I	GGNCC	2 cut(s)	25, 237
ClaI	ATCGAT	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	102
CspCI	CAANNNNNGTGG	2 cut(s)	344, 379
CviAII	CATG	1 cut(s)	397
CviQI	GTAC	1 cut(s)	102
DinI	GGCGCC	1 cut(s)	568
DpnI	GATC	2 cut(s)	453, 505
DpnII	GATC	2 cut(s)	451, 503
DraIII	CACNNNGTG	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	624
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	621
Eco47I	GGWCC	2 cut(s)	25, 237
Eco88I	CYCGRG	2 cut(s)	140, 344
EcoT14I	CCWWGG	1 cut(s)	621
EgeI	GGCGCC	1 cut(s)	568
EheI	GGCGCC	1 cut(s)	568
ErhI	CCWWGG	1 cut(s)	621
FaeI	CATG	1 cut(s)	400
FaiI	YATR	7 cut(s)	53, 71, 90, 92, 164, 309, 398
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FaqI	GGGAC	2 cut(s)	54, 452
FatI	CATG	1 cut(s)	396
FauI	CCCGC	2 cut(s)	308, 545
Fnu4HI	GCNGC	4 cut(s)	394, 497, 550, 582
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	4 cut(s)	394, 497, 550, 582
FspBI	CTAG	3 cut(s)	146, 234, 458
GlaI	GCGC	1 cut(s)	568
GluI	GCNGC	4 cut(s)	394, 497, 550, 582
HaeII	RGCGCY	1 cut(s)	570
HaeIII	GGCC	1 cut(s)	626
HapII	CCGG	3 cut(s)	470, 478, 528
HhaI	GCGC	1 cut(s)	569
Hin1I	GRCGYC	1 cut(s)	567
Hin1II	CATG	1 cut(s)	400
Hin6I	GCGC	1 cut(s)	567
HinP1I	GCGC	1 cut(s)	567
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	2 cut(s)	42, 112
HpaII	CCGG	3 cut(s)	470, 478, 528
HphI	GGTGA	1 cut(s)	417
Hpy166II	GTNNAC	3 cut(s)	28, 283, 577
Hpy188I	TCNGA	3 cut(s)	9, 111, 205
Hpy188III	TCNNGA	2 cut(s)	336, 346
Hpy8I	GTNNAC	3 cut(s)	28, 283, 577
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	262, 343
HpyCH4III	ACNGT	2 cut(s)	253, 598
HpyCH4IV	ACGT	2 cut(s)	135, 285
HpyCH4V	TGCA	2 cut(s)	223, 396
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 390
HpySE526I	ACGT	2 cut(s)	135, 285
Hsp92I	GRCGYC	1 cut(s)	567
Hsp92II	CATG	1 cut(s)	400
HspAI	GCGC	1 cut(s)	567
KasI	GGCGCC	1 cut(s)	566
Kzo9I	GATC	2 cut(s)	451, 503
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	2 cut(s)	73, 546
LpnPI	CCDG	9 cut(s)	192, 198, 233, 321, 483, 491, 541, 570, 618
Lsp1109I	GCAGC	4 cut(s)	380, 508, 561, 593
MaeI	CTAG	3 cut(s)	146, 234, 458
MaeII	ACGT	2 cut(s)	135, 285
MaeIII	GTNAC	2 cut(s)	247, 600
MalI	GATC	2 cut(s)	453, 505
MboI	GATC	2 cut(s)	451, 503
MboII	GAAGA	5 cut(s)	129, 170, 179, 204, 332
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	1 cut(s)	141
MlsI	TGGCCA	1 cut(s)	626
MluCI	AATT	2 cut(s)	105, 196
MluNI	TGGCCA	1 cut(s)	626
Mly113I	GGCGCC	1 cut(s)	567
MlyI	GAGTC	1 cut(s)	36
MnlI	CCTC	4 cut(s)	255, 553, 557, 585
Mox20I	TGGCCA	1 cut(s)	626
MroXI	GAANNNNTTC	1 cut(s)	196
MscI	TGGCCA	1 cut(s)	626
MseI	TTAA	1 cut(s)	438
Msp20I	TGGCCA	1 cut(s)	626
MspA1I	CMGCKG	2 cut(s)	552, 584
MspI	CCGG	3 cut(s)	470, 478, 528
MspR9I	CCNGG	2 cut(s)	470, 479
MwoI	GCNNNNNNNGC	2 cut(s)	136, 390
NarI	GGCGCC	1 cut(s)	567
NciI	CCSGG	2 cut(s)	470, 479
NdeII	GATC	2 cut(s)	451, 503
NheI	GCTAGC	1 cut(s)	145
NlaIII	CATG	1 cut(s)	400
NlaIV	GGNNCC	2 cut(s)	526, 568
NspI	RCATGY	1 cut(s)	400
NspV	TTCGAA	4 cut(s)	115, 156, 190, 610
PaeR7I	CTCGAG	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	1 cut(s)	508
PdmI	GAANNNNTTC	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	112
PflMI	CCANNNNNTGG	1 cut(s)	303
PfoI	TCCNGGA	1 cut(s)	468
PkrI	GCNGC	4 cut(s)	395, 498, 551, 583
Ple19I	CGATCG	1 cut(s)	506
PleI	GAGTC	1 cut(s)	36
PluTI	GGCGCC	1 cut(s)	570
PpsI	GAGTC	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	526, 568
PspPI	GGNCC	2 cut(s)	25, 237
PspXI	VCTCGAGB	1 cut(s)	140
PstI	CTGCAG	1 cut(s)	225
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	451
PvuI	CGATCG	1 cut(s)	506
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	4 cut(s)	394, 497, 550, 582
Sau3AI	GATC	2 cut(s)	451, 503
Sau96I	GGNCC	2 cut(s)	25, 237
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	2 cut(s)	470, 479
SduI	GDGCHC	1 cut(s)	141
SfcI	CTRYAG	1 cut(s)	221
SfoI	GGCGCC	1 cut(s)	568
Sfr274I	CTCGAG	1 cut(s)	140
SfuI	TTCGAA	4 cut(s)	115, 156, 190, 610
SgrAI	CRCCGGYG	1 cut(s)	527
SinI	GGWCC	2 cut(s)	25, 237
SlaI	CTCGAG	1 cut(s)	140
SmlI	CTYRAG	2 cut(s)	140, 589
SmoI	CTYRAG	2 cut(s)	140, 589
Sse9I	AATT	2 cut(s)	105, 196
SsiI	CCGC	4 cut(s)	315, 388, 544, 552
SspDI	GGCGCC	1 cut(s)	566
SspMI	CTAG	3 cut(s)	146, 234, 458
StyD4I	CCNGG	2 cut(s)	468, 477
StyI	CCWWGG	1 cut(s)	621
TaaI	ACNGT	2 cut(s)	253, 598
TaiI	ACGT	2 cut(s)	138, 288
TaqI	TCGA	8 cut(s)	115, 141, 156, 190, 293, 375, 502, 610
TasI	AATT	2 cut(s)	105, 196
TatI	WGTACW	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	1 cut(s)	186
TseI	GCWGC	4 cut(s)	393, 496, 549, 581
TspDTI	ATGAA	3 cut(s)	55, 189, 508
TspGWI	ACGGA	1 cut(s)	462
TspRI	CASTG	1 cut(s)	186
Van91I	CCANNNNNTGG	1 cut(s)	303
VpaK11BI	GGWCC	2 cut(s)	25, 237
XapI	RAATTY	1 cut(s)	196
XceI	RCATGY	1 cut(s)	400
XhoI	CTCGAG	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	196
XspI	CTAG	3 cut(s)	146, 234, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.