Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0015760

Physical Location & Seq

Genomic Coordinates Reverse (-)

9141244 .. 9143617

Gene Structure 2374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG119800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTTCTTCTCCGGCGATTCGTTGAATCGGAAGCACGTGGATTTGGGGGGACGGAGTATGAAGGAGAGGGATAGGCAAAAGCTTCTGGAGCAAACGAGGGGGACTCATTCGTTTTCCATAGGAGTCACAAAAGTCATTAATACAAATCTCTTGATAGAACTAAGTCCTAATGACGAAGATTATGTCTACCAAAGGAGTCCTGGGAAAATCTTAAGCATCAATATCCCAACATTTGAGGCCCTTACTCAATTTGGAACTGCTACAATCACAGCAAAGAATACTGGTGAAATGACTGGAACTGCAGCAACTGAAAGCACAGAATTTGAAAGCATATACAAGCTTAAAGTTACAATTGTCCCCACAAACAAGCCTATGATAAGAAAGGGACCTGCTTTGGATGAAGTGATAGCCAAACTGTGGAGTGCTTTTTTAGAAATCATGAAAGAATATAAGGGCTACACAGAGGAAGAAAGGAAGAAGGTTGTGTCAGCTAGTGGGCTTCATGTTGTCGGGACAGAACACCATGAATCTCGCCGAGTTGATAATCAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045026 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061024 GO:0061025 GO:0061936 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAP2-GCS1

Protein Analysis

184

Amino Acids

20.68

Weight (kDa)

7.93

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAP2-GCS1	PF10699	31 - 100	1.6e-16	Male gamete fusion factor
P-loop_SecA	PF21090	143 - 184	1.1e-09	SecA P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015760)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0036251
rosa_laevigata	RLG00000012092 RLG00000033373 RLG00000034843
rosa_roxburghii	Rroxscaffold_1G00008550 Rroxscaffold_1G00033210 Rroxscaffold_1G00033710 Rroxscaffold_1G00061800 Rroxscaffold_2G00110640 Rroxscaffold_2G00117290 Rroxscaffold_4G00286660 Rroxscaffold_4G00305950 Rroxscaffold_5G00345320 Rroxscaffold_5G00353480
rosa_samantha	Rh1DG239400 Rh7CG119800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	397
AccB7I	CCANNNNNTGG	1 cut(s)	417
AccI	GTMKAC	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	320
AcvI	CACGTG	1 cut(s)	37
AfiI	CCNNNNNNNGG	1 cut(s)	417
AflII	CTTAAG	1 cut(s)	211
AgsI	TTSAA	2 cut(s)	25, 326
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	3 cut(s)	82, 340, 491
AluI	AGCT	3 cut(s)	82, 340, 491
AlwNI	CAGNNNCTG	1 cut(s)	308
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	320
ArsI	GACNNNNNNTTYG	2 cut(s)	168, 200
AseI	ATTAAT	1 cut(s)	138
AspS9I	GGNCC	2 cut(s)	238, 386
AsuHPI	GGTGA	1 cut(s)	296
AvaII	GGWCC	1 cut(s)	386
BbrPI	CACGTG	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	314
BciT130I	CCWGG	1 cut(s)	201
BfaI	CTAG	1 cut(s)	492
BfmI	CTRYAG	1 cut(s)	300
BfrI	CTTAAG	1 cut(s)	211
BfuAI	ACCTGC	1 cut(s)	397
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	1 cut(s)	201
Bme18I	GGWCC	1 cut(s)	386
BmgT120I	GGNCC	2 cut(s)	238, 386
BmiI	GGNNCC	1 cut(s)	387
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	225
BplI	GAGNNNNNCTC	2 cut(s)	88, 120
BpmI	CTGGAG	1 cut(s)	107
BsaAI	YACGTR	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	1 cut(s)	417
Bse1I	ACTGG	2 cut(s)	286, 298
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	417
BseNI	ACTGG	2 cut(s)	286, 298
BseXI	GCAGC	1 cut(s)	314
BshFI	GGCC	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	5 cut(s)	63, 115, 341, 399, 526
BslI	CCNNNNNNNGG	1 cut(s)	417
BsmFI	GGGAC	5 cut(s)	63, 115, 341, 399, 526
BsnI	GGCC	1 cut(s)	239
BspANI	GGCC	1 cut(s)	239
BspHI	TCATGA	1 cut(s)	438
BspLI	GGNNCC	1 cut(s)	387
BspMAI	CTGCAG	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	397
BspTI	CTTAAG	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	286, 298
BssECI	CCNNGG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	417
BstAFI	CTTAAG	1 cut(s)	211
BstBAI	YACGTR	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	403
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	403
BveI	ACCTGC	1 cut(s)	397
CaiI	CAGNNNCTG	1 cut(s)	308
CciI	TCATGA	1 cut(s)	438
Cfr13I	GGNCC	2 cut(s)	238, 386
CviAII	CATG	3 cut(s)	439, 503, 524
CviJI	RGCY	8 cut(s)	82, 239, 340, 370, 410, 456, 491, 499
CviKI_1	RGCY	8 cut(s)	82, 239, 340, 370, 410, 456, 491, 499
DdeI	CTNAG	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	386
Eco72I	CACGTG	1 cut(s)	37
EcoO109I	RGGNCCY	2 cut(s)	238, 386
EcoRII	CCWGG	1 cut(s)	199
FaeI	CATG	3 cut(s)	442, 506, 527
FaqI	GGGAC	5 cut(s)	63, 115, 341, 399, 526
FatI	CATG	3 cut(s)	438, 502, 523
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	410
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	1 cut(s)	492
GluI	GCNGC	1 cut(s)	303
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	1 cut(s)	12
Hin1II	CATG	3 cut(s)	442, 506, 527
HindIII	AAGCTT	2 cut(s)	80, 338
HinfI	GANTC	6 cut(s)	17, 25, 103, 123, 196, 527
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	30, 549
Hpy188III	TCNNGA	4 cut(s)	86, 151, 439, 511
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	2 cut(s)	55, 472
HpyCH4III	ACNGT	1 cut(s)	417
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	1 cut(s)	302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	3 cut(s)	442, 506, 527
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	7 cut(s)	25, 71, 186, 213, 267, 279, 402
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	2 cut(s)	124, 346
MboII	GAAGA	3 cut(s)	188, 479, 487
MfeI	CAATTG	1 cut(s)	351
MluCI	AATT	3 cut(s)	248, 320, 351
MlyI	GAGTC	3 cut(s)	97, 132, 205
MnlI	CCTC	4 cut(s)	60, 90, 229, 457
MseI	TTAA	4 cut(s)	138, 212, 342, 553
MspCI	CTTAAG	1 cut(s)	211
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	201
MunI	CAATTG	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	1 cut(s)	88
NlaIII	CATG	3 cut(s)	442, 506, 527
NlaIV	GGNNCC	1 cut(s)	387
NmuCI	GTSAC	1 cut(s)	124
PagI	TCATGA	1 cut(s)	438
PfeI	GAWTC	3 cut(s)	17, 25, 527
PflMI	CCANNNNNTGG	1 cut(s)	417
PkrI	GCNGC	1 cut(s)	304
PleI	GAGTC	3 cut(s)	97, 131, 204
PmaCI	CACGTG	1 cut(s)	37
PmlI	CACGTG	1 cut(s)	37
PpsI	GAGTC	3 cut(s)	97, 131, 204
Ppu21I	YACGTR	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	386
PshBI	ATTAAT	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	386
Psp6I	CCWGG	1 cut(s)	199
PspCI	CACGTG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	1 cut(s)	387
PspPI	GGNCC	2 cut(s)	238, 386
PspPPI	RGGWCCY	1 cut(s)	386
PstI	CTGCAG	1 cut(s)	304
PstNI	CAGNNNCTG	1 cut(s)	308
SaqAI	TTAA	4 cut(s)	138, 212, 342, 553
SatI	GCNGC	1 cut(s)	303
Sau96I	GGNCC	2 cut(s)	238, 386
SchI	GAGTC	3 cut(s)	97, 132, 205
ScrFI	CCNGG	1 cut(s)	201
SetI	ASST	6 cut(s)	39, 84, 342, 391, 483, 493
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	300
SinI	GGWCC	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	3 cut(s)	248, 320, 351
SspMI	CTAG	1 cut(s)	492
StyD4I	CCNGG	1 cut(s)	199
TaaI	ACNGT	1 cut(s)	417
TaiI	ACGT	1 cut(s)	39
TasI	AATT	3 cut(s)	248, 320, 351
TfiI	GAWTC	3 cut(s)	17, 25, 527
Tru1I	TTAA	4 cut(s)	138, 212, 342, 553
Tru9I	TTAA	4 cut(s)	138, 212, 342, 553
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	5 cut(s)	74, 414, 455, 491, 540
TspGWI	ACGGA	1 cut(s)	67
Van91I	CCANNNNNTGG	1 cut(s)	417
Vha464I	CTTAAG	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	386
VspI	ATTAAT	1 cut(s)	138
XapI	RAATTY	1 cut(s)	320
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.