Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0015760

Physical Location & Seq

Genomic Coordinates Reverse (-)

48865055 .. 48868666

Gene Structure 3612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00033710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTTCTTCTCCCACGATTCGTCTAATCGGAAGCACGTGGATTTGGGGGACGGAGTACGAAGGAGAGGGATAGGCGAAGCTTCCGGAGCAAACGAGGTTGGAGGTTTAGGAAGAGAAGAAAATGATAGAGGGACTCATTCGTTTTCCATAGGAGTCACAGAAGTCATTAATACAAATCTCTTGATAGAACTAAGTGCTGATGACGTAGATTATGTCTACCAAAGGAGTCCTGGGAAAATCTTAAGCATCAATATCCCAACATTTGAGGCCCTTACTCAATTTGGAACTGCTACAATTACAGCAAAGAATATTGGTGAAGTGGAAGCATCCTATTGCTTAACGTTTGATTGCTCAAGTGATGTCACCCTTATGGAGGAGCAATACTTCATTATGAAGCCAAAAGAAACGTTAACTGGATCATTCAAACTTTACCCGGGAACCGATCAAGCTGCAAAATACATCTGTGCAGCTATACTTAAGGACTCTAATTATAATGAAGTGGATAGAGCCGAGTGCCAATTTTCTACGACATCTACTGTCATTGATAATGGATCACAGTCGTCAATTATGACAGTGAGGACTGGGAAGGAAGACATTAGAGCCATAACAAGGATGCCCACCTGCGGTAATGATCCAAAGCTCGAGAAGCAACGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045026 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061024 GO:0061025 GO:0061936 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAP2-GCS1

Protein Analysis

219

Amino Acids

24.11

Weight (kDa)

5.08

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAP2-GCS1	PF10699	40 - 191	4.4e-46	Male gamete fusion factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015760)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0036251
rosa_laevigata	RLG00000012092 RLG00000033373 RLG00000034843
rosa_roxburghii	Rroxscaffold_1G00008550 Rroxscaffold_1G00033210 Rroxscaffold_1G00033710 Rroxscaffold_1G00061800 Rroxscaffold_2G00110640 Rroxscaffold_2G00117290 Rroxscaffold_4G00286660 Rroxscaffold_4G00305950 Rroxscaffold_5G00345320 Rroxscaffold_5G00353480
rosa_samantha	Rh1DG239400 Rh7CG119800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	492
AarI	CACCTGC	1 cut(s)	629
Acc36I	ACCTGC	1 cut(s)	629
AccI	GTMKAC	1 cut(s)	216
AccIII	TCCGGA	1 cut(s)	83
AciI	CCGC	1 cut(s)	624
AclI	AACGTT	2 cut(s)	341, 407
AclWI	GGATC	3 cut(s)	424, 559, 626
AcvI	CACGTG	1 cut(s)	37
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	3 cut(s)	373, 609, 623
AflII	CTTAAG	2 cut(s)	241, 476
AgsI	TTSAA	1 cut(s)	424
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	4 cut(s)	80, 449, 470, 640
AluI	AGCT	4 cut(s)	80, 449, 470, 640
AlwI	GGATC	3 cut(s)	424, 559, 626
Ama87I	CYCGRG	2 cut(s)	433, 641
Aor13HI	TCCGGA	1 cut(s)	83
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	2 cut(s)	449, 467
AseI	ATTAAT	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	268
AsuC2I	CCSGG	2 cut(s)	434, 435
AsuHPI	GGTGA	2 cut(s)	326, 355
AvaI	CYCGRG	2 cut(s)	433, 641
BbrPI	CACGTG	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	597
BbvI	GCAGC	2 cut(s)	436, 479
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BciT130I	CCWGG	1 cut(s)	231
BcnI	CCSGG	2 cut(s)	434, 435
BfrI	CTTAAG	2 cut(s)	241, 476
BfuAI	ACCTGC	1 cut(s)	629
BisI	GCNGC	2 cut(s)	450, 468
BlsI	GCNGC	2 cut(s)	451, 469
Bme1390I	CCNGG	3 cut(s)	231, 434, 435
BmeT110I	CYCGRG	2 cut(s)	433, 641
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	439
BmrFI	CCNGG	3 cut(s)	231, 434, 435
BmrI	ACTGGG	1 cut(s)	591
BmsI	GCATC	3 cut(s)	255, 335, 603
BmuI	ACTGGG	1 cut(s)	591
BpiI	GAAGAC	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	337
BpuMI	CCSGG	2 cut(s)	434, 435
BsaAI	YACGTR	1 cut(s)	37
BsaJI	CCNNGG	2 cut(s)	230, 433
BsaWI	WCCGGW	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	3 cut(s)	373, 609, 623
Bse1I	ACTGG	2 cut(s)	418, 586
BseAI	TCCGGA	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	230, 433
BseGI	GGATG	2 cut(s)	326, 618
BseLI	CCNNNNNNNGG	3 cut(s)	373, 609, 623
BseNI	ACTGG	2 cut(s)	418, 586
BseRI	GAGGAG	1 cut(s)	389
BseXI	GCAGC	2 cut(s)	436, 479
BsgI	GTGCAG	1 cut(s)	486
BshFI	GGCC	1 cut(s)	269
BsiHKCI	CYCGRG	2 cut(s)	433, 641
BsiSI	CCGG	2 cut(s)	84, 434
BslFI	GGGAC	2 cut(s)	62, 145
BslI	CCNNNNNNNGG	3 cut(s)	373, 609, 623
BsmFI	GGGAC	2 cut(s)	62, 145
BsnI	GGCC	1 cut(s)	269
BsoBI	CYCGRG	2 cut(s)	433, 641
Bsp13I	TCCGGA	1 cut(s)	83
Bsp143I	GATC	4 cut(s)	416, 442, 551, 631
BspACI	CCGC	1 cut(s)	624
BspANI	GGCC	1 cut(s)	269
BspEI	TCCGGA	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	439
BspMI	ACCTGC	1 cut(s)	629
BspPI	GGATC	3 cut(s)	424, 559, 626
BspTI	CTTAAG	2 cut(s)	241, 476
BsrI	ACTGG	2 cut(s)	418, 586
BssECI	CCNNGG	2 cut(s)	230, 433
BssMI	GATC	4 cut(s)	416, 442, 551, 631
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	3 cut(s)	538, 558, 574
Bst6I	CTCTTC	1 cut(s)	106
BstAFI	CTTAAG	2 cut(s)	241, 476
BstBAI	YACGTR	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	191
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	2 cut(s)	326, 618
BstKTI	GATC	4 cut(s)	419, 445, 554, 634
BstMBI	GATC	4 cut(s)	416, 442, 551, 631
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 646
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	3 cut(s)	229, 432, 433
BstV1I	GCAGC	2 cut(s)	436, 479
BstV2I	GAAGAC	1 cut(s)	597
BsuRI	GGCC	1 cut(s)	269
BtsCI	GGATG	2 cut(s)	326, 618
BtsIMutI	CAGTG	1 cut(s)	579
BveI	ACCTGC	1 cut(s)	629
Cfr13I	GGNCC	1 cut(s)	268
Cfr9I	CCCGGG	1 cut(s)	433
Csp6I	GTAC	1 cut(s)	56
CviJI	RGCY	8 cut(s)	80, 269, 397, 449, 470, 509, 602, 640
CviKI_1	RGCY	8 cut(s)	80, 269, 397, 449, 470, 509, 602, 640
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	4 cut(s)	418, 444, 553, 633
DpnII	GATC	4 cut(s)	416, 442, 551, 631
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
Eco72I	CACGTG	1 cut(s)	37
Eco88I	CYCGRG	2 cut(s)	433, 641
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	229
FaiI	YATR	8 cut(s)	149, 213, 371, 392, 473, 492, 569, 605
FaqI	GGGAC	2 cut(s)	62, 145
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	450, 468
FokI	GGATG	2 cut(s)	313, 625
Fsp4HI	GCNGC	2 cut(s)	450, 468
GluI	GCNGC	2 cut(s)	450, 468
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	2 cut(s)	84, 434
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HindIII	AAGCTT	1 cut(s)	78
HinfI	GANTC	5 cut(s)	17, 133, 153, 226, 482
HpaI	GTTAAC	1 cut(s)	411
HpaII	CCGG	2 cut(s)	84, 434
HphI	GGTGA	2 cut(s)	326, 355
Hpy166II	GTNNAC	2 cut(s)	217, 411
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	3 cut(s)	84, 181, 643
Hpy8I	GTNNAC	2 cut(s)	217, 411
HpyAV	CCTTC	2 cut(s)	54, 580
HpyCH4III	ACNGT	3 cut(s)	538, 558, 574
HpyCH4IV	ACGT	5 cut(s)	36, 204, 341, 407, 652
HpyCH4V	TGCA	2 cut(s)	452, 467
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 646
HpyF3I	CTNAG	1 cut(s)	191
HpySE526I	ACGT	5 cut(s)	36, 204, 341, 407, 652
Kpn2I	TCCGGA	1 cut(s)	83
KspAI	GTTAAC	1 cut(s)	411
Kzo9I	GATC	4 cut(s)	416, 442, 551, 631
LmnI	GCTCC	2 cut(s)	86, 376
LpnPI	CCDG	7 cut(s)	97, 216, 243, 399, 447, 567, 634
Lsp1109I	GCAGC	2 cut(s)	436, 479
LweI	GCATC	3 cut(s)	255, 335, 603
MaeII	ACGT	5 cut(s)	36, 204, 341, 407, 652
MaeIII	GTNAC	2 cut(s)	154, 361
MalI	GATC	4 cut(s)	418, 444, 553, 633
MboI	GATC	4 cut(s)	416, 442, 551, 631
MboII	GAAGA	3 cut(s)	123, 128, 602
MluCI	AATT	5 cut(s)	278, 294, 487, 518, 564
MlyI	GAGTC	4 cut(s)	127, 162, 235, 476
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	7 cut(s)	59, 88, 95, 122, 259, 367, 570
MroI	TCCGGA	1 cut(s)	83
MseI	TTAA	5 cut(s)	168, 242, 338, 410, 477
MslI	CAYNNNNRTG	1 cut(s)	368
MspCI	CTTAAG	2 cut(s)	241, 476
MspI	CCGG	2 cut(s)	84, 434
MspR9I	CCNGG	3 cut(s)	231, 434, 435
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	86, 646
NciI	CCSGG	2 cut(s)	434, 435
NdeII	GATC	4 cut(s)	416, 442, 551, 631
NlaIV	GGNNCC	1 cut(s)	439
NmeAIII	GCCGAG	1 cut(s)	535
NmuCI	GTSAC	2 cut(s)	154, 361
PaeR7I	CTCGAG	1 cut(s)	641
PaqCI	CACCTGC	1 cut(s)	629
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	451, 469
PleI	GAGTC	4 cut(s)	127, 161, 234, 476
PmaCI	CACGTG	1 cut(s)	37
PmlI	CACGTG	1 cut(s)	37
PpsI	GAGTC	4 cut(s)	127, 161, 234, 476
Ppu21I	YACGTR	1 cut(s)	37
PshBI	ATTAAT	1 cut(s)	168
PsiI	TTATAA	1 cut(s)	492
Psp1406I	AACGTT	2 cut(s)	341, 407
Psp6I	CCWGG	1 cut(s)	229
PspCI	CACGTG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	439
PspPI	GGNCC	1 cut(s)	268
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	368
SaqAI	TTAA	5 cut(s)	168, 242, 338, 410, 477
SatI	GCNGC	2 cut(s)	450, 468
Sau3AI	GATC	4 cut(s)	416, 442, 551, 631
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	4 cut(s)	127, 162, 235, 476
ScrFI	CCNGG	3 cut(s)	231, 434, 435
SfaNI	GCATC	3 cut(s)	255, 335, 603
Sfr274I	CTCGAG	1 cut(s)	641
SlaI	CTCGAG	1 cut(s)	641
SmaI	CCCGGG	1 cut(s)	435
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	4 cut(s)	241, 352, 476, 641
SmoI	CTYRAG	4 cut(s)	241, 352, 476, 641
Sse9I	AATT	5 cut(s)	278, 294, 487, 518, 564
SsiI	CCGC	1 cut(s)	624
SspI	AATATT	1 cut(s)	310
StyD4I	CCNGG	3 cut(s)	229, 432, 433
TaaI	ACNGT	3 cut(s)	538, 558, 574
TaiI	ACGT	5 cut(s)	39, 207, 344, 410, 655
TaqI	TCGA	1 cut(s)	642
TasI	AATT	5 cut(s)	278, 294, 487, 518, 564
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	5 cut(s)	168, 242, 338, 410, 477
Tru9I	TTAA	5 cut(s)	168, 242, 338, 410, 477
TscAI	CASTG	1 cut(s)	579
TseFI	GTSAC	2 cut(s)	154, 361
TseI	GCWGC	2 cut(s)	449, 467
Tsp45I	GTSAC	2 cut(s)	154, 361
TspDTI	ATGAA	3 cut(s)	376, 407, 510
TspGWI	ACGGA	1 cut(s)	66
TspMI	CCCGGG	1 cut(s)	433
TspRI	CASTG	1 cut(s)	579
Vha464I	CTTAAG	2 cut(s)	241, 476
VspI	ATTAAT	1 cut(s)	168
XagI	CCTNNNNNAGG	1 cut(s)	371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XhoI	CTCGAG	1 cut(s)	641
XmaI	CCCGGG	1 cut(s)	433
XmiI	GTMKAC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.