Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015760

Physical Location & Seq

Genomic Coordinates Reverse (-)

44824867 .. 44877869

Gene Structure 53003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00117290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGAGCTTCCGATCTGGTTGTCTTCCACCAAGTCGAAGAGAGCAGCTGCCTTTAGATACGAAGAGCCGAAGGTGATGAGAGGTGGTGTTGAACTTGAGCTTTCATTGGAGCTTGGCTCGTGTTGGTATAGCGGCGGGGAAGAGCTTGGGGTGTACGGAATACTCGGGAAGGAACAAGAGATGTGGGAGACTACGATAAGGGCTTGCGAGCTGCATGTTGGGGTTCGTATAAGGATGAGTGGTGCTATGGATGAGGAAGAGATTATTGTGCGGCGGGGAAGAGCTTGGGGTGTACGGAATACTCGGGAAGGAACAAGAGATGTGGGAGACTACGATAAGGGCTTGCGGTGCATGTTGGGATTATGTCTACCAAAGGAGTCTGGGAAAATCTTTGTGGCCCTTACTCAAATTGGAACTGCTACAATCACACAAAGAATACTTGGTGAAGTGGAAGCATCCTATTGCTTAATGTCTGATTTCTCAAGTGATGTCACCCTTATGGAGGAGCAATACTCCATTATAAAGCCAAAAGAAACGTTATCTCGATCATTCAAACTTTACCCGAGGAACCGATCAAGCTGTGCGGCTATACTTAAGGACTCTAATTATAATGAAGCGGATAGAGCCAACATTGCCTTGATCCGAGAGAAGAAAGAGTGGATATACCTTGTGAGGATATGGATCATACTTGTCCGAAACATGCTTGAGCTCCACCCCATCACCATTGTTACAACCAAGTCCTACAAGATGGGTACAGCAGAGTTGACTAAAGTTTTGAAAAAATATTGGATGACCAAGAAGGTGATAGTTCGTTGGTGGTTGTTCGGAGGAAAGAAAAATGAAAGATTCGATCGTGTGGAGTGCTTTCGAGGTCTTGATCGATTTCTTGCTGGTGATGATGTGAAGGAAAAAAAGCCCGACCCTTCAATTTATCTTATAGCTGCCAAGAGACTTAGAATCTCGTCGGAGATTGGTTGGTTGTGGAGGACAGTGTTATTGGGCTACATAGAAAATCAAGGGGAGGACATTAAGGATAAAGCCATGGAGAGATTTAAAGGAGAAAAAGTCCAAAATGCGTCCAAATACATTCCAACTCTGCTGTACACATCTTCTAGAATGATGGGTAGCATGAAACCGTTGCAGAATAAGGGTCGCAAATCTCTTTGCCGTCGCAAAAGTGGTATGCGAGGCATTTTGCCGTGGCTAAAAGTATTGGCGACGCAGAACTGGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045026 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061024 GO:0061025 GO:0061936 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAP2-GCS1

Protein Analysis

411

Amino Acids

47.45

Weight (kDa)

9.6

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAP2-GCS1	PF10699	130 - 213	7.9e-08	Male gamete fusion factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015760)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0036251
rosa_laevigata	RLG00000012092 RLG00000033373 RLG00000034843
rosa_roxburghii	Rroxscaffold_1G00008550 Rroxscaffold_1G00033210 Rroxscaffold_1G00033710 Rroxscaffold_1G00061800 Rroxscaffold_2G00110640 Rroxscaffold_2G00117290 Rroxscaffold_4G00286660 Rroxscaffold_4G00305950 Rroxscaffold_5G00345320 Rroxscaffold_5G00353480
rosa_samantha	Rh1DG239400 Rh7CG119800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	521, 609
AccI	GTMKAC	1 cut(s)	367
AciI	CCGC	7 cut(s)	132, 135, 271, 274, 346, 584, 617
AclI	AACGTT	1 cut(s)	536
AclWI	GGATC	2 cut(s)	634, 689
AfaI	GTAC	4 cut(s)	155, 294, 754, 1103
AfiI	CCNNNNNNNGG	1 cut(s)	502
AflII	CTTAAG	1 cut(s)	593
AgsI	TTSAA	4 cut(s)	92, 553, 778, 927
Alw21I	GWGCWC	1 cut(s)	711
Alw26I	GTCTC	3 cut(s)	182, 321, 943
AlwI	GGATC	2 cut(s)	634, 689
Ama87I	CYCGRG	3 cut(s)	164, 303, 562
AoxI	GGCC	1 cut(s)	396
ApeKI	GCWGC	4 cut(s)	44, 47, 211, 941
ArsI	GACNNNNNNTTYG	2 cut(s)	757, 789
AspLEI	GCGC	1 cut(s)	1233
AspS9I	GGNCC	1 cut(s)	397
AsuHPI	GGTGA	6 cut(s)	85, 455, 484, 712, 814, 905
AvaI	CYCGRG	3 cut(s)	164, 303, 562
BanII	GRGCYC	1 cut(s)	711
BauI	CACGAG	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	711
BbvI	GCAGC	4 cut(s)	34, 56, 198, 928
BccI	CCATC	3 cut(s)	725, 742, 1114
BceAI	ACGGC	2 cut(s)	1152, 1183
BcoDI	GTCTC	3 cut(s)	182, 321, 943
BfaI	CTAG	1 cut(s)	1113
BfoI	RGCGCY	1 cut(s)	1234
BfrI	CTTAAG	1 cut(s)	593
BisI	GCNGC	7 cut(s)	45, 48, 133, 212, 272, 585, 942
BlsI	GCNGC	7 cut(s)	46, 49, 134, 213, 273, 586, 943
BmeT110I	CYCGRG	3 cut(s)	164, 303, 562
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	1 cut(s)	569
BmsI	GCATC	1 cut(s)	464
BpiI	GAAGAC	1 cut(s)	15
BplI	GAGNNNNNCTC	4 cut(s)	101, 133, 497, 529
BpuEI	CTTGAG	3 cut(s)	116, 466, 725
Bsa29I	ATCGAT	1 cut(s)	880
BsaBI	GATNNNNATC	1 cut(s)	680
BsaJI	CCNNGG	3 cut(s)	563, 1041, 1199
BsaXI	ACNNNNNCTCC	2 cut(s)	1050, 1080
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
Bse1I	ACTGG	1 cut(s)	1232
Bse3DI	GCAATG	1 cut(s)	630
Bse8I	GATNNNNATC	1 cut(s)	680
BseCI	ATCGAT	1 cut(s)	880
BseDI	CCNNGG	3 cut(s)	563, 1041, 1199
BseGI	GGATG	4 cut(s)	240, 256, 455, 795
BseJI	GATNNNNATC	1 cut(s)	680
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseMI	GCAATG	1 cut(s)	630
BseNI	ACTGG	1 cut(s)	1232
BseRI	GAGGAG	1 cut(s)	518
BseXI	GCAGC	4 cut(s)	34, 56, 198, 928
Bsh1285I	CGRYCG	1 cut(s)	853
BshFI	GGCC	1 cut(s)	398
BshVI	ATCGAT	1 cut(s)	880
BsiEI	CGRYCG	1 cut(s)	853
BsiHKAI	GWGCWC	1 cut(s)	711
BsiHKCI	CYCGRG	3 cut(s)	164, 303, 562
BslI	CCNNNNNNNGG	1 cut(s)	502
BsmAI	GTCTC	3 cut(s)	182, 321, 943
BsnI	GGCC	1 cut(s)	398
BsoBI	CYCGRG	3 cut(s)	164, 303, 562
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp1407I	TGTACA	1 cut(s)	1101
Bsp143I	GATC	7 cut(s)	12, 545, 572, 639, 681, 850, 877
Bsp19I	CCATGG	1 cut(s)	1041
BspACI	CCGC	7 cut(s)	132, 135, 271, 274, 346, 584, 617
BspANI	GGCC	1 cut(s)	398
BspDI	ATCGAT	1 cut(s)	880
BspLI	GGNNCC	1 cut(s)	569
BspPI	GGATC	2 cut(s)	634, 689
BspQI	GCTCTTC	3 cut(s)	57, 135, 274
BspTI	CTTAAG	1 cut(s)	593
BsrDI	GCAATG	1 cut(s)	630
BsrGI	TGTACA	1 cut(s)	1101
BsrI	ACTGG	1 cut(s)	1232
BssECI	CCNNGG	3 cut(s)	563, 1041, 1199
BssMI	GATC	7 cut(s)	12, 545, 572, 639, 681, 850, 877
BssSI	CACGAG	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	1041
Bst2BI	CACGAG	1 cut(s)	118
Bst4CI	ACNGT	2 cut(s)	991, 1137
Bst6I	CTCTTC	5 cut(s)	32, 57, 135, 252, 274
BstAFI	CTTAAG	1 cut(s)	593
BstAUI	TGTACA	1 cut(s)	1101
BstC8I	GCNNGC	3 cut(s)	205, 209, 344
BstDEI	CTNAG	1 cut(s)	953
BstDSI	CCRYGG	2 cut(s)	1041, 1199
BstENI	CCTNNNNNAGG	1 cut(s)	500
BstF5I	GGATG	4 cut(s)	240, 256, 455, 795
BstH2I	RGCGCY	1 cut(s)	1234
BstHHI	GCGC	1 cut(s)	1233
BstKTI	GATC	7 cut(s)	15, 548, 575, 642, 684, 853, 880
BstMAI	GTCTC	3 cut(s)	182, 321, 943
BstMBI	GATC	7 cut(s)	12, 545, 572, 639, 681, 850, 877
BstMCI	CGRYCG	1 cut(s)	853
BstMWI	GCNNNNNNNGC	4 cut(s)	348, 623, 632, 1228
BstNSI	RCATGY	3 cut(s)	218, 355, 703
BstV1I	GCAGC	4 cut(s)	34, 56, 198, 928
BstV2I	GAAGAC	1 cut(s)	15
Bsu15I	ATCGAT	1 cut(s)	880
BsuRI	GGCC	1 cut(s)	398
BsuTUI	ATCGAT	1 cut(s)	880
BtgI	CCRYGG	2 cut(s)	1041, 1199
BtsCI	GGATG	4 cut(s)	240, 256, 455, 795
BtsIMutI	CAGTG	1 cut(s)	996
Cac8I	GCNNGC	3 cut(s)	205, 209, 344
CfoI	GCGC	1 cut(s)	1233
Cfr13I	GGNCC	1 cut(s)	397
ClaI	ATCGAT	1 cut(s)	880
CseI	GACGC	2 cut(s)	1065, 1228
Csp6I	GTAC	4 cut(s)	154, 293, 753, 1102
CspCI	CAANNNNNGTGG	4 cut(s)	164, 199, 303, 338
CviAII	CATG	5 cut(s)	215, 352, 700, 1042, 1129
CviQI	GTAC	4 cut(s)	154, 293, 753, 1102
DdeI	CTNAG	1 cut(s)	953
DpnI	GATC	7 cut(s)	14, 547, 574, 641, 683, 852, 879
DpnII	GATC	7 cut(s)	12, 545, 572, 639, 681, 850, 877
DraI	TTTAAA	1 cut(s)	1054
Eam1104I	CTCTTC	5 cut(s)	32, 57, 135, 252, 274
EarI	CTCTTC	5 cut(s)	32, 57, 135, 252, 274
Ecl136II	GAGCTC	1 cut(s)	709
Eco130I	CCWWGG	1 cut(s)	1041
Eco24I	GRGCYC	1 cut(s)	711
Eco53kI	GAGCTC	1 cut(s)	709
Eco88I	CYCGRG	3 cut(s)	164, 303, 562
EcoICRI	GAGCTC	1 cut(s)	709
EcoNI	CCTNNNNNAGG	1 cut(s)	500
EcoT14I	CCWWGG	1 cut(s)	1041
EcoT38I	GRGCYC	1 cut(s)	711
ErhI	CCWWGG	1 cut(s)	1041
FaeI	CATG	5 cut(s)	218, 355, 703, 1045, 1132
FatI	CATG	5 cut(s)	214, 351, 699, 1041, 1128
FauI	CCCGC	2 cut(s)	128, 267
FblI	GTMKAC	1 cut(s)	367
Fnu4HI	GCNGC	7 cut(s)	45, 48, 133, 212, 272, 585, 942
FokI	GGATG	4 cut(s)	247, 263, 442, 802
FriOI	GRGCYC	1 cut(s)	711
Fsp4HI	GCNGC	7 cut(s)	45, 48, 133, 212, 272, 585, 942
FspBI	CTAG	1 cut(s)	1113
GlaI	GCGC	1 cut(s)	1232
GluI	GCNGC	7 cut(s)	45, 48, 133, 212, 272, 585, 942
HaeII	RGCGCY	1 cut(s)	1234
HaeIII	GGCC	1 cut(s)	398
HgaI	GACGC	2 cut(s)	1065, 1228
HhaI	GCGC	1 cut(s)	1233
Hin1II	CATG	5 cut(s)	218, 355, 703, 1045, 1132
Hin6I	GCGC	1 cut(s)	1231
HinP1I	GCGC	1 cut(s)	1231
HincII	GTYRAC	1 cut(s)	765
HindII	GTYRAC	1 cut(s)	765
HinfI	GANTC	4 cut(s)	377, 599, 846, 957
HphI	GGTGA	6 cut(s)	85, 455, 484, 712, 814, 905
Hpy166II	GTNNAC	5 cut(s)	154, 293, 368, 765, 1104
Hpy188I	TCNGA	6 cut(s)	12, 475, 644, 695, 827, 967
Hpy188III	TCNNGA	5 cut(s)	166, 305, 543, 875, 1113
Hpy8I	GTNNAC	5 cut(s)	154, 293, 368, 765, 1104
Hpy99I	CGWCG	3 cut(s)	967, 1173, 1222
HpyAV	CCTTC	6 cut(s)	64, 163, 302, 793, 898, 933
HpyCH4III	ACNGT	2 cut(s)	991, 1137
HpyCH4IV	ACGT	1 cut(s)	536
HpyCH4V	TGCA	3 cut(s)	214, 351, 1141
HpyF10VI	GCNNNNNNNGC	4 cut(s)	348, 623, 632, 1228
HpyF3I	CTNAG	1 cut(s)	953
HpySE526I	ACGT	1 cut(s)	536
Hsp92II	CATG	5 cut(s)	218, 355, 703, 1045, 1132
HspAI	GCGC	1 cut(s)	1231
Kzo9I	GATC	7 cut(s)	12, 545, 572, 639, 681, 850, 877
LguI	GCTCTTC	3 cut(s)	57, 135, 274
LmnI	GCTCC	4 cut(s)	4, 109, 505, 714
LpnPI	CCDG	3 cut(s)	366, 876, 1213
Lsp1109I	GCAGC	4 cut(s)	34, 56, 198, 928
LweI	GCATC	1 cut(s)	464
MaeI	CTAG	1 cut(s)	1113
MaeII	ACGT	1 cut(s)	536
MaeIII	GTNAC	2 cut(s)	490, 727
MalI	GATC	7 cut(s)	14, 547, 574, 641, 683, 852, 879
MboI	GATC	7 cut(s)	12, 545, 572, 639, 681, 850, 877
MboII	GAAGA	8 cut(s)	15, 49, 74, 152, 269, 291, 661, 1101
MhlI	GDGCHC	1 cut(s)	711
MluCI	AATT	3 cut(s)	408, 604, 927
MlyI	GAGTC	2 cut(s)	386, 593
MmeI	TCCRAC	2 cut(s)	945, 1115
MseI	TTAA	4 cut(s)	467, 594, 1029, 1053
MslI	CAYNNNNRTG	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	47
MspCI	CTTAAG	1 cut(s)	593
MwoI	GCNNNNNNNGC	4 cut(s)	348, 623, 632, 1228
NcoI	CCATGG	1 cut(s)	1041
NdeII	GATC	7 cut(s)	12, 545, 572, 639, 681, 850, 877
NlaIII	CATG	5 cut(s)	218, 355, 703, 1045, 1132
NlaIV	GGNNCC	1 cut(s)	569
NmuCI	GTSAC	1 cut(s)	490
NspI	RCATGY	3 cut(s)	218, 355, 703
PciSI	GCTCTTC	3 cut(s)	57, 135, 274
PfeI	GAWTC	2 cut(s)	846, 957
PkrI	GCNGC	7 cut(s)	46, 49, 134, 213, 273, 586, 943
Ple19I	CGATCG	1 cut(s)	853
PleI	GAGTC	2 cut(s)	385, 593
PpsI	GAGTC	2 cut(s)	385, 593
PsiI	TTATAA	2 cut(s)	521, 609
Psp124BI	GAGCTC	1 cut(s)	711
Psp1406I	AACGTT	1 cut(s)	536
PspN4I	GGNNCC	1 cut(s)	569
PspPI	GGNCC	1 cut(s)	397
PvuI	CGATCG	1 cut(s)	853
PvuII	CAGCTG	1 cut(s)	47
RsaI	GTAC	4 cut(s)	155, 294, 754, 1103
RsaNI	GTAC	4 cut(s)	154, 293, 753, 1102
RseI	CAYNNNNRTG	1 cut(s)	497
SacI	GAGCTC	1 cut(s)	711
SapI	GCTCTTC	3 cut(s)	57, 135, 274
SaqAI	TTAA	4 cut(s)	467, 594, 1029, 1053
SatI	GCNGC	7 cut(s)	45, 48, 133, 212, 272, 585, 942
Sau3AI	GATC	7 cut(s)	12, 545, 572, 639, 681, 850, 877
Sau96I	GGNCC	1 cut(s)	397
SchI	GAGTC	2 cut(s)	386, 593
SduI	GDGCHC	1 cut(s)	711
SfaNI	GCATC	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	4 cut(s)	95, 481, 593, 704
SmoI	CTYRAG	4 cut(s)	95, 481, 593, 704
Sse9I	AATT	3 cut(s)	408, 604, 927
SsiI	CCGC	7 cut(s)	132, 135, 271, 274, 346, 584, 617
SspI	AATATT	1 cut(s)	785
SspMI	CTAG	1 cut(s)	1113
SstI	GAGCTC	1 cut(s)	711
StyI	CCWWGG	1 cut(s)	1041
TaaI	ACNGT	2 cut(s)	991, 1137
TaiI	ACGT	1 cut(s)	539
TaqI	TCGA	5 cut(s)	35, 544, 849, 868, 880
TasI	AATT	3 cut(s)	408, 604, 927
TatI	WGTACW	1 cut(s)	1101
TauI	GCSGC	3 cut(s)	135, 274, 587
TfiI	GAWTC	2 cut(s)	846, 957
Tru1I	TTAA	4 cut(s)	467, 594, 1029, 1053
Tru9I	TTAA	4 cut(s)	467, 594, 1029, 1053
TscAI	CASTG	1 cut(s)	996
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	4 cut(s)	44, 47, 211, 941
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	4 cut(s)	93, 627, 855, 1145
TspGWI	ACGGA	2 cut(s)	171, 310
TspRI	CASTG	1 cut(s)	996
Vha464I	CTTAAG	1 cut(s)	593
XagI	CCTNNNNNAGG	1 cut(s)	500
XbaI	TCTAGA	1 cut(s)	1112
XceI	RCATGY	3 cut(s)	218, 355, 703
XmiI	GTMKAC	1 cut(s)	367
XspI	CTAG	1 cut(s)	1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.