Rroxscaffold_4G00286660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0015760
Physical Location & Seq
Reverse (-)
7662532 .. 7678641
16110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00286660.1

Sequence Viewer

Length: 321 bp
ATGGATGTAGATCCTCAAATTAGCTGTAAATCCATGGAGACTCTTGATTCGGTTCATCCAGGGCGGCCCGGGGGTGTTCAAATGGAGCAGCCGCACAAGGCCTCCGGTTTTCGAAGGCCACCACCATTTTTTTCTTTTATTTACACCAAACATTTTTTCCTAGTTCTTCTAATTGAGATCTTTTGGGATAACGGCGGGGAAGAACTTGGGGTGTACGGAATACTCGGGAAGGAACAAGAGATGTGGGAGACTACGATAAGAGCTTGCGGTGCATGTTGGGGTAAATTGTTGCTTCAATCTGTCATTAACAAGATGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.03

Weight (kDa)

5.86

Isoelectric Point (pI)

64.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 64, 92, 195, 267
AclWI GGATC 1 cut(s) 5
AfaI GTAC 1 cut(s) 215
AgsI TTSAA 2 cut(s) 80, 296
AjnI CCWGG 1 cut(s) 58
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 2 cut(s) 24, 263
AluI AGCT 2 cut(s) 24, 263
Alw26I GTCTC 2 cut(s) 32, 242
AlwI GGATC 1 cut(s) 5
Ama87I CYCGRG 2 cut(s) 68, 224
AoxI GGCC 3 cut(s) 65, 99, 116
ApeKI GCWGC 1 cut(s) 88
ArsI GACNNNNNNTTYG 2 cut(s) 31, 63
AspS9I GGNCC 1 cut(s) 66
AsuC2I CCSGG 2 cut(s) 69, 70
AsuII TTCGAA 1 cut(s) 112
AvaI CYCGRG 2 cut(s) 68, 224
BbvI GCAGC 1 cut(s) 100
BceAI ACGGC 1 cut(s) 208
BciT130I CCWGG 1 cut(s) 60
BcnI CCSGG 2 cut(s) 69, 70
BcoDI GTCTC 2 cut(s) 32, 242
BfaI CTAG 1 cut(s) 161
BglII AGATCT 1 cut(s) 177
BisI GCNGC 3 cut(s) 65, 89, 92
BlsI GCNGC 3 cut(s) 66, 90, 93
Bme1390I CCNGG 3 cut(s) 60, 69, 70
BmeT110I CYCGRG 2 cut(s) 68, 224
BmgT120I GGNCC 1 cut(s) 66
BmrFI CCNGG 3 cut(s) 60, 69, 70
Bpu14I TTCGAA 1 cut(s) 112
BpuMI CCSGG 2 cut(s) 69, 70
BsaBI GATNNNNATC 1 cut(s) 9
BsaJI CCNNGG 4 cut(s) 33, 59, 68, 69
BsaWI WCCGGW 1 cut(s) 104
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 4 cut(s) 33, 59, 68, 69
BseGI GGATG 2 cut(s) 10, 55
BseJI GATNNNNATC 1 cut(s) 9
BseXI GCAGC 1 cut(s) 100
BshFI GGCC 3 cut(s) 67, 101, 118
BsiHKCI CYCGRG 2 cut(s) 68, 224
BsiSI CCGG 2 cut(s) 69, 105
BsmAI GTCTC 2 cut(s) 32, 242
BsnI GGCC 3 cut(s) 67, 101, 118
BsoBI CYCGRG 2 cut(s) 68, 224
Bsp119I TTCGAA 1 cut(s) 112
Bsp143I GATC 2 cut(s) 10, 177
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 4 cut(s) 64, 92, 195, 267
BspANI GGCC 3 cut(s) 67, 101, 118
BspPI GGATC 1 cut(s) 5
BspT104I TTCGAA 1 cut(s) 112
BssECI CCNNGG 4 cut(s) 33, 59, 68, 69
BssMI GATC 2 cut(s) 10, 177
BssT1I CCWWGG 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 60
BstBI TTCGAA 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 265
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 10, 55
BstKTI GATC 2 cut(s) 13, 180
BstMAI GTCTC 2 cut(s) 32, 242
BstMBI GATC 2 cut(s) 10, 177
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 1 cut(s) 60
BstNSI RCATGY 1 cut(s) 276
BstSCI CCNGG 3 cut(s) 58, 67, 68
BstV1I GCAGC 1 cut(s) 100
BstX2I RGATCY 2 cut(s) 10, 177
BstYI RGATCY 2 cut(s) 10, 177
BsuRI GGCC 3 cut(s) 67, 101, 118
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 2 cut(s) 10, 55
Cac8I GCNNGC 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 66
Cfr9I CCCGGG 1 cut(s) 68
Csp6I GTAC 1 cut(s) 214
CspCI CAANNNNNGTGG 2 cut(s) 224, 259
CviAII CATG 2 cut(s) 34, 273
CviJI RGCY 6 cut(s) 24, 67, 91, 101, 118, 263
CviKI_1 RGCY 6 cut(s) 24, 67, 91, 101, 118, 263
CviQI GTAC 1 cut(s) 214
DpnI GATC 2 cut(s) 12, 179
DpnII GATC 2 cut(s) 10, 177
Eco130I CCWWGG 1 cut(s) 33
Eco147I AGGCCT 1 cut(s) 101
Eco88I CYCGRG 2 cut(s) 68, 224
EcoRII CCWGG 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 2 cut(s) 37, 276
FaiI YATR 3 cut(s) 35, 274, 319
FatI CATG 2 cut(s) 33, 272
FauI CCCGC 1 cut(s) 188
Fnu4HI GCNGC 3 cut(s) 65, 89, 92
FokI GGATG 2 cut(s) 17, 42
Fsp4HI GCNGC 3 cut(s) 65, 89, 92
FspBI CTAG 1 cut(s) 161
GluI GCNGC 3 cut(s) 65, 89, 92
HaeIII GGCC 3 cut(s) 67, 101, 118
HapII CCGG 2 cut(s) 69, 105
Hin1II CATG 2 cut(s) 37, 276
HinfI GANTC 2 cut(s) 40, 47
HpaII CCGG 2 cut(s) 69, 105
Hpy166II GTNNAC 1 cut(s) 214
Hpy188III TCNNGA 2 cut(s) 44, 226
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 2 cut(s) 108, 223
HpyCH4V TGCA 1 cut(s) 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
Hsp92II CATG 2 cut(s) 37, 276
Kzo9I GATC 2 cut(s) 10, 177
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 4 cut(s) 45, 72, 82, 118
Lsp1109I GCAGC 1 cut(s) 100
MaeI CTAG 1 cut(s) 161
MalI GATC 2 cut(s) 12, 179
MboI GATC 2 cut(s) 10, 177
MboII GAAGA 2 cut(s) 158, 212
MflI RGATCY 2 cut(s) 10, 177
MluCI AATT 3 cut(s) 18, 171, 284
MlyI GAGTC 1 cut(s) 34
MnlI CCTC 2 cut(s) 24, 112
MseI TTAA 1 cut(s) 306
MspI CCGG 2 cut(s) 69, 105
MspR9I CCNGG 3 cut(s) 60, 69, 70
MvaI CCWGG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 269
NciI CCSGG 2 cut(s) 69, 70
NcoI CCATGG 1 cut(s) 33
NdeII GATC 2 cut(s) 10, 177
NlaIII CATG 2 cut(s) 37, 276
NspI RCATGY 1 cut(s) 276
NspV TTCGAA 1 cut(s) 112
PceI AGGCCT 1 cut(s) 101
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 3 cut(s) 66, 90, 93
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspPI GGNCC 1 cut(s) 66
PsuI RGATCY 2 cut(s) 10, 177
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 3 cut(s) 65, 89, 92
Sau3AI GATC 2 cut(s) 10, 177
Sau96I GGNCC 1 cut(s) 66
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 3 cut(s) 60, 69, 70
SetI ASST 2 cut(s) 26, 265
SfuI TTCGAA 1 cut(s) 112
SmaI CCCGGG 1 cut(s) 70
Sse9I AATT 3 cut(s) 18, 171, 284
SseBI AGGCCT 1 cut(s) 101
SsiI CCGC 4 cut(s) 64, 92, 195, 267
SspMI CTAG 1 cut(s) 161
StuI AGGCCT 1 cut(s) 101
StyD4I CCNGG 3 cut(s) 58, 67, 68
StyI CCWWGG 1 cut(s) 33
TaqI TCGA 1 cut(s) 112
TasI AATT 3 cut(s) 18, 171, 284
TauI GCSGC 2 cut(s) 67, 94
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TseI GCWGC 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 44
TspGWI ACGGA 1 cut(s) 231
TspMI CCCGGG 1 cut(s) 68
XceI RCATGY 1 cut(s) 276
XmaI CCCGGG 1 cut(s) 68
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.