Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0015760

Physical Location & Seq

Genomic Coordinates Reverse (-)

45398048 .. 45402130

Gene Structure 4083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG239400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTTCTTCTCCGGCGATTCGTCGAATCAGAAGCACATGGATTTGGGGGGACGGAGTACAAAGGAGAGGGATAGGCAGAAGCTTCTGGAGCAAACGAGGCTGACCAAAACCGTATCGAAAGGAAACAGGTGCCACTTTTTGGTGTGGAAGGAAGGGACTCATTCGTTTTCCATAGGAGTCACAGAAGTCATTAATACAAATCTCTTGATAGAATTAAGTGCTGATGACGTAGATTATGTCTACCAAAGGAGTCCTGGGAAAATCTTAAGCATCAATATTCCAACATTTGAGGCCCTTACTCAATTTGGAACTGCTACAATCACAGCAAAGAATACTGGTGAAGTGGAAGCATCCTATTGCTTAACGTTAGATCCACATACCTTGAGATTCATTAGAGGCAAAGTTCCATTTTCATTACCTGCAACATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045026 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061024 GO:0061025 GO:0061936 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAP2-GCS1

Protein Analysis

143

Amino Acids

15.97

Weight (kDa)

8.6

Isoelectric Point (pI)

29.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAP2-GCS1	PF10699	43 - 123	9e-23	Male gamete fusion factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015760)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0036251
rosa_laevigata	RLG00000012092 RLG00000033373 RLG00000034843
rosa_roxburghii	Rroxscaffold_1G00008550 Rroxscaffold_1G00033210 Rroxscaffold_1G00033710 Rroxscaffold_1G00061800 Rroxscaffold_2G00110640 Rroxscaffold_2G00117290 Rroxscaffold_4G00286660 Rroxscaffold_4G00305950 Rroxscaffold_5G00345320 Rroxscaffold_5G00353480
rosa_samantha	Rh1DG239400 Rh7CG119800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	427
AccB1I	GGYRCC	1 cut(s)	129
AccB7I	CCANNNNNTGG	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	240
AclI	AACGTT	1 cut(s)	365
AclWI	GGATC	1 cut(s)	365
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	139
AflII	CTTAAG	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
AlwI	GGATC	1 cut(s)	365
AoxI	GGCC	1 cut(s)	291
AseI	ATTAAT	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	350
BanI	GGYRCC	1 cut(s)	129
BciT130I	CCWGG	1 cut(s)	255
BfrI	CTTAAG	1 cut(s)	265
BfuAI	ACCTGC	1 cut(s)	427
Bme1390I	CCNGG	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	131
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	2 cut(s)	279, 359
BpmI	CTGGAG	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	403
BsaJI	CCNNGG	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	1 cut(s)	350
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseNI	ACTGG	1 cut(s)	340
BshFI	GGCC	1 cut(s)	293
BshNI	GGYRCC	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	2 cut(s)	63, 169
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmFI	GGGAC	2 cut(s)	63, 169
BsnI	GGCC	1 cut(s)	293
Bsp143I	GATC	1 cut(s)	370
BspANI	GGCC	1 cut(s)	293
BspHI	TCATGA	1 cut(s)	428
BspLI	GGNNCC	1 cut(s)	131
BspMI	ACCTGC	1 cut(s)	427
BspPI	GGATC	1 cut(s)	365
BspT107I	GGYRCC	1 cut(s)	129
BspTI	CTTAAG	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	340
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	1 cut(s)	370
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	112
BstAFI	CTTAAG	1 cut(s)	265
BstF5I	GGATG	1 cut(s)	350
BstKTI	GATC	1 cut(s)	373
BstMBI	GATC	1 cut(s)	370
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 97
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	293
BtsCI	GGATG	1 cut(s)	350
BveI	ACCTGC	1 cut(s)	427
CciI	TCATGA	1 cut(s)	428
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	57
CspCI	CAANNNNNGTGG	2 cut(s)	363, 398
CviAII	CATG	2 cut(s)	37, 429
CviJI	RGCY	3 cut(s)	82, 100, 293
CviKI_1	RGCY	3 cut(s)	82, 100, 293
CviQI	GTAC	1 cut(s)	57
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	253
FaeI	CATG	2 cut(s)	40, 432
FaiI	YATR	5 cut(s)	38, 173, 237, 378, 430
FaqI	GGGAC	2 cut(s)	63, 169
FatI	CATG	2 cut(s)	36, 428
FblI	GTMKAC	1 cut(s)	240
FokI	GGATG	1 cut(s)	337
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	1 cut(s)	12
Hin1II	CATG	2 cut(s)	40, 432
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	6 cut(s)	17, 25, 157, 177, 250, 387
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	3 cut(s)	86, 205, 429
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	142, 146
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	2 cut(s)	228, 365
HpyCH4V	TGCA	1 cut(s)	422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 97
HpySE526I	ACGT	2 cut(s)	228, 365
Hsp92II	CATG	2 cut(s)	40, 432
Kzo9I	GATC	1 cut(s)	370
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	6 cut(s)	25, 71, 112, 240, 267, 321
LweI	GCATC	2 cut(s)	279, 359
MaeII	ACGT	2 cut(s)	228, 365
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MflI	RGATCY	1 cut(s)	370
MluCI	AATT	2 cut(s)	212, 302
MlyI	GAGTC	3 cut(s)	151, 186, 259
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	4 cut(s)	60, 90, 283, 389
MseI	TTAA	4 cut(s)	192, 215, 266, 362
MspCI	CTTAAG	1 cut(s)	265
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	88, 97
NdeII	GATC	1 cut(s)	370
NlaIII	CATG	2 cut(s)	40, 432
NlaIV	GGNNCC	1 cut(s)	131
NmuCI	GTSAC	1 cut(s)	178
PagI	TCATGA	1 cut(s)	428
PfeI	GAWTC	3 cut(s)	17, 25, 387
PflMI	CCANNNNNTGG	1 cut(s)	139
PleI	GAGTC	3 cut(s)	151, 185, 258
PpsI	GAGTC	3 cut(s)	151, 185, 258
PshBI	ATTAAT	1 cut(s)	192
Psp1406I	AACGTT	1 cut(s)	365
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SaqAI	TTAA	4 cut(s)	192, 215, 266, 362
Sau3AI	GATC	1 cut(s)	370
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	3 cut(s)	151, 186, 259
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	6 cut(s)	84, 131, 231, 368, 383, 421
SfaNI	GCATC	2 cut(s)	279, 359
SmlI	CTYRAG	2 cut(s)	265, 382
SmoI	CTYRAG	2 cut(s)	265, 382
Sse9I	AATT	2 cut(s)	212, 302
SspI	AATATT	1 cut(s)	277
StyD4I	CCNGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	2 cut(s)	231, 368
TaqI	TCGA	2 cut(s)	23, 116
TasI	AATT	2 cut(s)	212, 302
TatI	WGTACW	1 cut(s)	56
TfiI	GAWTC	3 cut(s)	17, 25, 387
Tru1I	TTAA	4 cut(s)	192, 215, 266, 362
Tru9I	TTAA	4 cut(s)	192, 215, 266, 362
TseFI	GTSAC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	379, 402
TspGWI	ACGGA	1 cut(s)	67
Van91I	CCANNNNNTGG	1 cut(s)	139
Vha464I	CTTAAG	1 cut(s)	265
VspI	ATTAAT	1 cut(s)	192
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.