RLG00000012397

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015192
Physical Location & Seq
Forward (+)
18324413 .. 18326483
2071 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012397

Sequence Viewer

Length: 327 bp
ATGGTTTATTGTAATTTTCCTCTTCTTCTAGTCAAATGGAAAGAAGAGCATCAATCTAGGTCAACATTCATTAGTGACCAAGATCTAAGGGTTGCAAGGATGAAAGACAAAGAAAATTATTCTTCTTCCCGTCATGTCCCTGAAGATATTGTCAGGGATATTCTTAAAAGGCTGTTTACCAAATCGCTGGTCCGGTTTCTAAGTGTATCAAAGGACTGGAATCATATAATTTCAGACCCAGGATTTGCTGCCAGCCATCTCAGTCACAATATAGTAGTCTACAAATCTTTCCTTGATCTCTTAGCACAAAAAGCTCCAACCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

109

Amino Acids

12.65

Weight (kDa)

9.37

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 45 - 80 7e-06 F-box-like
F-box PF00646 47 - 82 2.7e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 279
AcuI CTGAAG 1 cut(s) 162
AjnI CCWGG 1 cut(s) 238
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
ApeKI GCWGC 1 cut(s) 248
ArsI GACNNNNNNTTYG 4 cut(s) 174, 206, 227, 259
AspS9I GGNCC 1 cut(s) 190
AvaII GGWCC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 264
BciT130I CCWGG 1 cut(s) 240
BfaI CTAG 2 cut(s) 29, 57
BglII AGATCT 1 cut(s) 82
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 1 cut(s) 240
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 240
BmsI GCATC 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 238
BsaWI WCCGGW 1 cut(s) 192
Bse1I ACTGG 1 cut(s) 221
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 238
BseGI GGATG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 235
BsiSI CCGG 1 cut(s) 193
BslFI GGGAC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 122
Bsp143I GATC 2 cut(s) 82, 295
BspCNI CTCAG 1 cut(s) 273
BspQI GCTCTTC 1 cut(s) 39
BsrI ACTGG 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 2 cut(s) 82, 295
Bst2UI CCWGG 1 cut(s) 240
Bst6I CTCTTC 2 cut(s) 27, 39
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 4 cut(s) 86, 200, 260, 301
BstF5I GGATG 1 cut(s) 105
BstKTI GATC 2 cut(s) 85, 298
BstMBI GATC 2 cut(s) 82, 295
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 235
BstX2I RGATCY 1 cut(s) 82
BstXI CCANNNNNNTGG 1 cut(s) 187
BstYI RGATCY 1 cut(s) 82
BtsCI GGATG 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 190
CviAII CATG 1 cut(s) 134
CviJI RGCY 3 cut(s) 172, 255, 314
CviKI_1 RGCY 3 cut(s) 172, 255, 314
DdeI CTNAG 4 cut(s) 86, 200, 260, 301
DpnI GATC 2 cut(s) 84, 297
DpnII GATC 2 cut(s) 82, 295
Eam1104I CTCTTC 2 cut(s) 27, 39
EarI CTCTTC 2 cut(s) 27, 39
Eco47I GGWCC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 238
FaeI CATG 1 cut(s) 137
FaiI YATR 4 cut(s) 135, 225, 227, 272
FaqI GGGAC 1 cut(s) 122
FatI CATG 1 cut(s) 133
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 249
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 2 cut(s) 29, 57
GluI GCNGC 1 cut(s) 249
HapII CCGG 1 cut(s) 193
Hin1II CATG 1 cut(s) 137
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 1 cut(s) 220
HpaII CCGG 1 cut(s) 193
Hpy166II GTNNAC 3 cut(s) 63, 177, 280
Hpy188I TCNGA 2 cut(s) 235, 326
Hpy8I GTNNAC 3 cut(s) 63, 177, 280
HpyCH4V TGCA 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 4 cut(s) 86, 200, 260, 301
Hsp92II CATG 1 cut(s) 137
Kzo9I GATC 2 cut(s) 82, 295
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 8 cut(s) 139, 153, 173, 202, 206, 225, 252, 265
Lsp1109I GCAGC 1 cut(s) 235
LweI GCATC 1 cut(s) 58
MaeI CTAG 2 cut(s) 29, 57
MaeIII GTNAC 2 cut(s) 74, 263
MalI GATC 2 cut(s) 84, 297
MboI GATC 2 cut(s) 82, 295
MboII GAAGA 6 cut(s) 14, 17, 56, 114, 117, 155
MflI RGATCY 1 cut(s) 82
MluCI AATT 3 cut(s) 13, 115, 228
MnlI CCTC 1 cut(s) 30
MseI TTAA 1 cut(s) 165
MspI CCGG 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeII GATC 2 cut(s) 82, 295
NlaIII CATG 1 cut(s) 137
NmuCI GTSAC 2 cut(s) 74, 263
PciSI GCTCTTC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 220
PkrI GCNGC 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 238
PspPI GGNCC 1 cut(s) 190
PsuI RGATCY 1 cut(s) 82
SapI GCTCTTC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 2 cut(s) 82, 295
Sau96I GGNCC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 240
SetI ASST 3 cut(s) 62, 316, 323
SfaNI GCATC 1 cut(s) 58
SinI GGWCC 1 cut(s) 190
Sse9I AATT 3 cut(s) 13, 115, 228
SspMI CTAG 2 cut(s) 29, 57
StyD4I CCNGG 1 cut(s) 238
TasI AATT 3 cut(s) 13, 115, 228
TfiI GAWTC 1 cut(s) 220
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TseFI GTSAC 2 cut(s) 74, 263
TseI GCWGC 1 cut(s) 248
Tsp45I GTSAC 2 cut(s) 74, 263
TspDTI ATGAA 2 cut(s) 58, 116
VpaK11BI GGWCC 1 cut(s) 190
XmiI GTMKAC 1 cut(s) 279
XspI CTAG 2 cut(s) 29, 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.