Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0015192

Physical Location & Seq

Genomic Coordinates Forward (+)

8511060 .. 8511620

Gene Structure 561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG052900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTCAGCTCGCACGGAGATCTATAGTCTGAACGGCAAATGTTGGAAGGAAATTGTTGAACTTCCTGATATTCTTAAGGAGTCTGTGAACTTTATCAAATGTGGAGTCTGCAAGGGAATTGTATACTGGCTGATACCAAATATATATGAAGTCAATGTTCTCTGTTTGAACCTCAGCACTACGCTTTTCATGAAGCTGGAGCTACCCAATGCAATGATGGAGGGTGGATCTCTACTGTTGAGTCGATTCAAGGAAAATTTGTGTCTGTTTCACTGCCATACGACAGATAAGGTGGAGCATGTTGTTGACATCTGGGTTTTGGAAAACAACTCTTTCAAAAAGGAACACTTGGCAGTCTCAAAGGGAAGGGAGATTGTTCCAATTGGGTTTGGGCTGCATAATGAACTGATTCTTGTGAAACTTGATGAACACAATGAGTATAGACTGCAGCTATATGATTTGGAATCAAATGAGATGACTGACACCGGTATCATAATGGCTGAAAAGCTGTTTGCTGATACTTATACTGAAAGCTTACTCCTGATCAACAATCCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

186

Amino Acids

21.38

Weight (kDa)

5.14

Isoelectric Point (pI)

22.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	4 - 108	7e-07	F-box associated beta propeller domain
FBA_3	PF08268	4 - 165	5.6e-07	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33705
rosa_laevigata	RLG00000012397 RLG00000030408
rosa_multiflora	Rmu_sc0001817.1_g000001 Rmu_sc0003410.1_g000051 Rmu_sc0027805.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090460 Rroxscaffold_4G00327500
rosa_samantha	Rh1AG045700 Rh1AG046400 Rh1BG044900 Rh1CG050600 Rh1DG052900 Rh1DG054900 Rh6DG318500
rosa_wichuraiana	Rw1G004070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	123
AclWI	GGATC	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	256
AflII	CTTAAG	1 cut(s)	74
AgeI	ACCGGT	1 cut(s)	485
AgsI	TTSAA	4 cut(s)	59, 169, 250, 337
AluBI	AGCT	6 cut(s)	8, 196, 202, 451, 508, 534
AluI	AGCT	6 cut(s)	8, 196, 202, 451, 508, 534
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	1 cut(s)	235
ApeKI	GCWGC	2 cut(s)	394, 448
ApoI	RAATTY	1 cut(s)	256
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
AsiGI	ACCGGT	1 cut(s)	485
Asp700I	GAANNNNTTC	1 cut(s)	408
BaeI	ACNNNNGTAYC	2 cut(s)	472, 505
BbvCI	CCTCAGC	1 cut(s)	173
BbvI	GCAGC	2 cut(s)	381, 460
BccI	CCATC	1 cut(s)	211
BceAI	ACGGC	1 cut(s)	49
BclI	TGATCA	1 cut(s)	543
BcoDI	GTCTC	1 cut(s)	361
BfmI	CTRYAG	2 cut(s)	22, 446
BfrI	CTTAAG	1 cut(s)	74
BglII	AGATCT	1 cut(s)	18
BisI	GCNGC	2 cut(s)	395, 449
BlsI	GCNGC	2 cut(s)	396, 450
BpmI	CTGGAG	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	173
BsaWI	WCCGGW	1 cut(s)	485
Bse118I	RCCGGY	1 cut(s)	485
Bse1I	ACTGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	219
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	131
BseXI	GCAGC	2 cut(s)	381, 460
BshTI	ACCGGT	1 cut(s)	485
BsiSI	CCGG	1 cut(s)	486
BsmAI	GTCTC	1 cut(s)	361
Bsp143I	GATC	3 cut(s)	18, 227, 543
BspCNI	CTCAG	1 cut(s)	186
BspHI	TCATGA	1 cut(s)	189
BspMAI	CTGCAG	1 cut(s)	450
BspPI	GGATC	1 cut(s)	235
BspTI	CTTAAG	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	485
BsrI	ACTGG	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	485
BssMI	GATC	3 cut(s)	18, 227, 543
BssNAI	GTATAC	1 cut(s)	124
Bst1107I	GTATAC	1 cut(s)	124
Bst4CI	ACNGT	1 cut(s)	237
BstAFI	CTTAAG	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	173
BstKTI	GATC	3 cut(s)	21, 230, 546
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	3 cut(s)	18, 227, 543
BstNSI	RCATGY	1 cut(s)	302
BstSFI	CTRYAG	2 cut(s)	22, 446
BstV1I	GCAGC	2 cut(s)	381, 460
BstX2I	RGATCY	2 cut(s)	18, 227
BstYI	RGATCY	2 cut(s)	18, 227
BstZ17I	GTATAC	1 cut(s)	124
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	10
CciI	TCATGA	1 cut(s)	189
Cfr10I	RCCGGY	1 cut(s)	485
CspAI	ACCGGT	1 cut(s)	485
CviAII	CATG	2 cut(s)	190, 299
CviJI	RGCY	9 cut(s)	8, 130, 196, 202, 394, 451, 500, 508, 534
CviKI_1	RGCY	9 cut(s)	8, 130, 196, 202, 394, 451, 500, 508, 534
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	3 cut(s)	20, 229, 545
DpnII	GATC	3 cut(s)	18, 227, 543
FaeI	CATG	2 cut(s)	193, 302
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FatI	CATG	2 cut(s)	189, 298
FbaI	TGATCA	1 cut(s)	543
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	395, 449
Fsp4HI	GCNGC	2 cut(s)	395, 449
GluI	GCNGC	2 cut(s)	395, 449
GsuI	CTGGAG	1 cut(s)	218
HapII	CCGG	1 cut(s)	486
Hin1II	CATG	2 cut(s)	193, 302
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HindIII	AAGCTT	1 cut(s)	532
HinfI	GANTC	6 cut(s)	80, 105, 241, 246, 409, 464
HpaII	CCGG	1 cut(s)	486
Hpy166II	GTNNAC	3 cut(s)	88, 124, 307
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	3 cut(s)	65, 190, 541
Hpy8I	GTNNAC	3 cut(s)	88, 124, 307
HpyAV	CCTTC	2 cut(s)	40, 360
HpyCH4III	ACNGT	1 cut(s)	237
HpyCH4V	TGCA	4 cut(s)	111, 212, 397, 448
HpyF3I	CTNAG	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	193, 302
Ksp22I	TGATCA	1 cut(s)	543
Kzo9I	GATC	3 cut(s)	18, 227, 543
LmnI	GCTCC	2 cut(s)	199, 295
LpnPI	CCDG	6 cut(s)	78, 112, 182, 298, 499, 554
Lsp1109I	GCAGC	2 cut(s)	381, 460
MalI	GATC	3 cut(s)	20, 229, 545
MboI	GATC	3 cut(s)	18, 227, 543
MfeI	CAATTG	1 cut(s)	381
MflI	RGATCY	2 cut(s)	18, 227
MluCI	AATT	5 cut(s)	51, 117, 256, 381, 556
MlyI	GAGTC	3 cut(s)	89, 114, 250
MmeI	TCCRAC	1 cut(s)	23
MnlI	CCTC	2 cut(s)	182, 214
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	1 cut(s)	75
MspCI	CTTAAG	1 cut(s)	74
MspI	CCGG	1 cut(s)	486
MunI	CAATTG	1 cut(s)	381
NdeII	GATC	3 cut(s)	18, 227, 543
NlaIII	CATG	2 cut(s)	193, 302
NspI	RCATGY	1 cut(s)	302
PagI	TCATGA	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	3 cut(s)	246, 409, 464
PinAI	ACCGGT	1 cut(s)	485
PkrI	GCNGC	2 cut(s)	396, 450
PleI	GAGTC	3 cut(s)	88, 113, 249
PpsI	GAGTC	3 cut(s)	88, 113, 249
PstI	CTGCAG	1 cut(s)	450
PsuI	RGATCY	2 cut(s)	18, 227
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	2 cut(s)	395, 449
Sau3AI	GATC	3 cut(s)	18, 227, 543
SchI	GAGTC	3 cut(s)	89, 114, 250
SetI	ASST	8 cut(s)	10, 174, 198, 204, 294, 453, 510, 536
SfcI	CTRYAG	2 cut(s)	22, 446
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	5 cut(s)	51, 117, 256, 381, 556
TaaI	ACNGT	1 cut(s)	237
TaqI	TCGA	1 cut(s)	244
TasI	AATT	5 cut(s)	51, 117, 256, 381, 556
TfiI	GAWTC	3 cut(s)	246, 409, 464
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	278
TseI	GCWGC	2 cut(s)	394, 448
TspDTI	ATGAA	5 cut(s)	162, 178, 206, 417, 441
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	278
Vha464I	CTTAAG	1 cut(s)	74
XapI	RAATTY	1 cut(s)	256
XceI	RCATGY	1 cut(s)	302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	123
XmnI	GAANNNNTTC	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.