Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0015192

Physical Location & Seq

Genomic Coordinates Reverse (-)

61077599 .. 61078719

Gene Structure 1121 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030408

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAAAGACACAGAAAATTATTCTTCTCTCCCTCATATCCCTAATGATATTGTCAAGGATATTCTGAAAAGGCTATGTACCAAATCGCTGGTCCGATTTCTAAGTGTATCAAAGGACTGGAATCATATAATTTCAGACCCACAATTTGCTGCCAGCCATCTGAGTCACAATATATTACGGTCTACAAATCTTTCTTTAATCTCTTATCACAAAAAGCTCGACCCTTCTGAGTACCAGTTAGCTACCAAGGATGATCTTCATCTCTTTCCTAACGGCCGTCCAATGGGAAGAGTGGAGTCCTGTCTACATTTGCAATCCATCGATAAGAAAGTATGTGCTACTTCCAAGTCCCTCTTCCTCACTCCTGACTTCTCTGATGATCGTAATCTTCTTTCATTTGGGTTTATCCCAGACCGCGATGATTACATAGTTGTCAGAACTGTGTGGGGCAAAAGTTCTGATGAAATGTCAGCTCACATGGAGATCTATAGTCTGAACAGCAAATGTTGGAAGGAAATTGTTGAACTTCCTGATATTCTTAAGGAGTCTGTGAACTTTATCAAATGTGGAGTCTGCAAGGGAATTGTATACTGGCTGATACCAAATATATATGAAGTCCATGTTCTCTGTTTGAACCTCAGCACTACGCTTTTCATGAAGCTGGAGCTACCCAATGCAATGATGGAGGGTGGATCTCTACTGTTGAGTCGATTCAAGGAAAATTTGTGTCTGTTTCACTGCCATACGACAGATAAGGTGGAGCATGTTGTTGACATCTGGGTTTTGGAAAACAACTCTTTCAAAAAGGAACACTTGGCAGTCTCAAAGGGAAGGGAGATTGTTCCAATTGGGTTTGGGCTGCATAATGAACTGATTCTTGTGAAACTTGATGAGCACAATGAGTATAGACTGCAGCTATATGATTTGGAATCAAATGAGATGACTGACACCGGTATCATAATGGCTGAAAAGCTGTTTGCTGATACTTATACTGAAAGCTTACTTCTGATCAACAATCCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

342

Amino Acids

39.17

Weight (kDa)

5.83

Isoelectric Point (pI)

32.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	11 - 49	6.8e-09	F-box domain
FBA_3	PF08268	127 - 319	5e-10	F-box associated beta propeller domain
FBA_1	PF07734	138 - 263	1.3e-09	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33705
rosa_laevigata	RLG00000012397 RLG00000030408
rosa_multiflora	Rmu_sc0001817.1_g000001 Rmu_sc0003410.1_g000051 Rmu_sc0027805.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090460 Rroxscaffold_4G00327500
rosa_samantha	Rh1AG045700 Rh1AG046400 Rh1BG044900 Rh1CG050600 Rh1DG052900 Rh1DG054900 Rh6DG318500
rosa_wichuraiana	Rw1G004070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	182, 304, 588
AccII	CGCG	1 cut(s)	417
AciI	CCGC	1 cut(s)	415
AclWI	GGATC	1 cut(s)	700
AcoI	YGGCCR	1 cut(s)	274
AcsI	RAATTY	1 cut(s)	721
AfaI	GTAC	2 cut(s)	79, 233
AfiI	CCNNNNNNNGG	1 cut(s)	283
AflII	CTTAAG	1 cut(s)	539
AgeI	ACCGGT	1 cut(s)	950
AgsI	TTSAA	4 cut(s)	524, 634, 715, 802
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AluBI	AGCT	8 cut(s)	217, 242, 473, 661, 667, 916, 973, 999
AluI	AGCT	8 cut(s)	217, 242, 473, 661, 667, 916, 973, 999
Alw21I	GWGCWC	1 cut(s)	897
Alw26I	GTCTC	1 cut(s)	826
AlwI	GGATC	1 cut(s)	700
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	3 cut(s)	149, 859, 913
ApoI	RAATTY	1 cut(s)	721
ArsI	GACNNNNNNTTYG	6 cut(s)	75, 107, 128, 160, 555, 587
AsiGI	ACCGGT	1 cut(s)	950
Asp700I	GAANNNNTTC	1 cut(s)	873
AspS9I	GGNCC	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	91
BaeI	ACNNNNGTAYC	2 cut(s)	937, 970
Bbv12I	GWGCWC	1 cut(s)	897
BbvCI	CCTCAGC	1 cut(s)	638
BbvI	GCAGC	3 cut(s)	136, 846, 925
BccI	CCATC	3 cut(s)	165, 326, 676
BceAI	ACGGC	2 cut(s)	261, 289
BclI	TGATCA	1 cut(s)	1008
BcoDI	GTCTC	1 cut(s)	826
BfmI	CTRYAG	2 cut(s)	487, 911
BfrI	CTTAAG	1 cut(s)	539
BglII	AGATCT	1 cut(s)	483
BisI	GCNGC	3 cut(s)	150, 860, 914
BlsI	GCNGC	3 cut(s)	151, 861, 915
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	91
BpmI	CTGGAG	1 cut(s)	683
Bpu10I	CCTNAGC	1 cut(s)	638
Bsa29I	ATCGAT	1 cut(s)	321
BsaBI	GATNNNNATC	2 cut(s)	258, 384
BsaJI	CCNNGG	1 cut(s)	246
BsaWI	WCCGGW	1 cut(s)	950
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse118I	RCCGGY	1 cut(s)	950
Bse1I	ACTGG	3 cut(s)	122, 235, 596
Bse3DI	GCAATG	1 cut(s)	684
Bse8I	GATNNNNATC	2 cut(s)	258, 384
BseCI	ATCGAT	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	256
BseJI	GATNNNNATC	2 cut(s)	258, 384
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	3 cut(s)	152, 219, 652
BseNI	ACTGG	3 cut(s)	122, 235, 596
BseX3I	CGGCCG	1 cut(s)	274
BseXI	GCAGC	3 cut(s)	136, 846, 925
Bsh1236I	CGCG	1 cut(s)	417
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	276
BshTI	ACCGGT	1 cut(s)	950
BshVI	ATCGAT	1 cut(s)	321
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	897
BsiSI	CCGG	1 cut(s)	951
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	826
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	897
Bsp143I	GATC	5 cut(s)	253, 379, 483, 692, 1008
BspACI	CCGC	1 cut(s)	415
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	3 cut(s)	153, 220, 651
BspDI	ATCGAT	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	417
BspHI	TCATGA	1 cut(s)	654
BspMAI	CTGCAG	1 cut(s)	915
BspPI	GGATC	1 cut(s)	700
BspTI	CTTAAG	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	684
BsrFI	RCCGGY	1 cut(s)	950
BsrI	ACTGG	3 cut(s)	122, 235, 596
BssAI	RCCGGY	1 cut(s)	950
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	5 cut(s)	253, 379, 483, 692, 1008
BssNAI	GTATAC	1 cut(s)	589
BssT1I	CCWWGG	1 cut(s)	246
Bst1107I	GTATAC	1 cut(s)	589
Bst4CI	ACNGT	3 cut(s)	180, 442, 702
Bst6I	CTCTTC	2 cut(s)	283, 359
BstAFI	CTTAAG	1 cut(s)	539
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	4 cut(s)	101, 161, 228, 638
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	417
BstKTI	GATC	5 cut(s)	256, 382, 486, 695, 1011
BstMAI	GTCTC	1 cut(s)	826
BstMBI	GATC	5 cut(s)	253, 379, 483, 692, 1008
BstMCI	CGRYCG	1 cut(s)	277
BstNSI	RCATGY	1 cut(s)	767
BstSFI	CTRYAG	2 cut(s)	487, 911
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	3 cut(s)	136, 846, 925
BstX2I	RGATCY	2 cut(s)	483, 692
BstXI	CCANNNNNNTGG	1 cut(s)	88
BstYI	RGATCY	2 cut(s)	483, 692
BstZ17I	GTATAC	1 cut(s)	589
BstZI	CGGCCG	1 cut(s)	274
Bsu15I	ATCGAT	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	276
BsuTUI	ATCGAT	1 cut(s)	321
BtgZI	GCGATG	1 cut(s)	432
BtsCI	GGATG	1 cut(s)	256
BtsI	GCAGTG	1 cut(s)	736
BtsIMutI	CAGTG	1 cut(s)	736
Cac8I	GCNNGC	1 cut(s)	154
CciI	TCATGA	1 cut(s)	654
Cfr10I	RCCGGY	1 cut(s)	950
Cfr13I	GGNCC	1 cut(s)	91
ClaI	ATCGAT	1 cut(s)	321
Csp6I	GTAC	2 cut(s)	78, 232
CspAI	ACCGGT	1 cut(s)	950
CviAII	CATG	4 cut(s)	478, 620, 655, 764
CviQI	GTAC	2 cut(s)	78, 232
DdeI	CTNAG	4 cut(s)	101, 161, 228, 638
DpnI	GATC	5 cut(s)	255, 381, 485, 694, 1010
DpnII	GATC	5 cut(s)	253, 379, 483, 692, 1008
EaeI	YGGCCR	1 cut(s)	274
EagI	CGGCCG	1 cut(s)	274
Eam1104I	CTCTTC	2 cut(s)	283, 359
EarI	CTCTTC	2 cut(s)	283, 359
EclXI	CGGCCG	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	91
Eco52I	CGGCCG	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	4 cut(s)	481, 623, 658, 767
FalI	AAGNNNNNCTT	4 cut(s)	338, 370, 797, 829
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	4 cut(s)	477, 619, 654, 763
FbaI	TGATCA	1 cut(s)	1008
FblI	GTMKAC	3 cut(s)	182, 304, 588
Fnu4HI	GCNGC	3 cut(s)	150, 860, 914
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	3 cut(s)	150, 860, 914
GluI	GCNGC	3 cut(s)	150, 860, 914
GsuI	CTGGAG	1 cut(s)	683
HaeIII	GGCC	1 cut(s)	276
HapII	CCGG	1 cut(s)	951
Hin1II	CATG	4 cut(s)	481, 623, 658, 767
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HindIII	AAGCTT	1 cut(s)	997
HinfI	GANTC	9 cut(s)	121, 163, 296, 545, 570, 706, 711, 874, 929
HpaII	CCGG	1 cut(s)	951
Hpy166II	GTNNAC	5 cut(s)	183, 305, 553, 589, 772
Hpy188III	TCNNGA	3 cut(s)	365, 530, 655
Hpy8I	GTNNAC	5 cut(s)	183, 305, 553, 589, 772
HpyAV	CCTTC	3 cut(s)	234, 505, 825
HpyCH4III	ACNGT	3 cut(s)	180, 442, 702
HpyCH4V	TGCA	5 cut(s)	313, 576, 677, 862, 913
HpyF3I	CTNAG	4 cut(s)	101, 161, 228, 638
Hsp92II	CATG	4 cut(s)	481, 623, 658, 767
Ksp22I	TGATCA	1 cut(s)	1008
Kzo9I	GATC	5 cut(s)	253, 379, 483, 692, 1008
LmnI	GCTCC	2 cut(s)	664, 760
Lsp1109I	GCAGC	3 cut(s)	136, 846, 925
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	5 cut(s)	255, 381, 485, 694, 1010
MboI	GATC	5 cut(s)	253, 379, 483, 692, 1008
MboII	GAAGA	5 cut(s)	15, 248, 300, 346, 380
MfeI	CAATTG	1 cut(s)	846
MflI	RGATCY	2 cut(s)	483, 692
MhlI	GDGCHC	1 cut(s)	897
MluCI	AATT	8 cut(s)	16, 129, 143, 516, 582, 721, 846, 1021
MlyI	GAGTC	5 cut(s)	172, 305, 554, 579, 715
MmeI	TCCRAC	1 cut(s)	488
MnlI	CCTC	5 cut(s)	42, 362, 368, 647, 679
MroXI	GAANNNNTTC	1 cut(s)	873
MseI	TTAA	2 cut(s)	197, 540
MspCI	CTTAAG	1 cut(s)	539
MspI	CCGG	1 cut(s)	951
MunI	CAATTG	1 cut(s)	846
MvnI	CGCG	1 cut(s)	417
NdeII	GATC	5 cut(s)	253, 379, 483, 692, 1008
NlaIII	CATG	4 cut(s)	481, 623, 658, 767
NmuCI	GTSAC	1 cut(s)	164
NspI	RCATGY	1 cut(s)	767
PagI	TCATGA	1 cut(s)	654
PdmI	GAANNNNTTC	1 cut(s)	873
PfeI	GAWTC	4 cut(s)	121, 711, 874, 929
PinAI	ACCGGT	1 cut(s)	950
PkrI	GCNGC	3 cut(s)	151, 861, 915
PleI	GAGTC	5 cut(s)	171, 304, 553, 578, 714
PpsI	GAGTC	5 cut(s)	171, 304, 553, 578, 714
PspPI	GGNCC	1 cut(s)	91
PstI	CTGCAG	1 cut(s)	915
PsuI	RGATCY	2 cut(s)	483, 692
RsaI	GTAC	2 cut(s)	79, 233
RsaNI	GTAC	2 cut(s)	78, 232
SaqAI	TTAA	2 cut(s)	197, 540
SatI	GCNGC	3 cut(s)	150, 860, 914
Sau3AI	GATC	5 cut(s)	253, 379, 483, 692, 1008
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	5 cut(s)	172, 305, 554, 579, 715
SduI	GDGCHC	1 cut(s)	897
SfcI	CTRYAG	2 cut(s)	487, 911
SinI	GGWCC	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	8 cut(s)	16, 129, 143, 516, 582, 721, 846, 1021
SsiI	CCGC	1 cut(s)	415
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	3 cut(s)	180, 442, 702
TaqI	TCGA	3 cut(s)	219, 321, 709
TasI	AATT	8 cut(s)	16, 129, 143, 516, 582, 721, 846, 1021
TfiI	GAWTC	4 cut(s)	121, 711, 874, 929
Tru1I	TTAA	2 cut(s)	197, 540
Tru9I	TTAA	2 cut(s)	197, 540
TscAI	CASTG	1 cut(s)	743
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	3 cut(s)	149, 859, 913
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	8 cut(s)	17, 248, 384, 477, 627, 643, 671, 882
TspRI	CASTG	1 cut(s)	743
Vha464I	CTTAAG	1 cut(s)	539
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	1 cut(s)	721
XceI	RCATGY	1 cut(s)	767
XcmI	CCANNNNNNNNNTGG	1 cut(s)	679
XmiI	GTMKAC	3 cut(s)	182, 304, 588
XmnI	GAANNNNTTC	1 cut(s)	873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.