Rh1CG050600

F-box protein CPR30-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
9327036 .. 9327596
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG050600.1

Sequence Viewer

Length: 561 bp
ATGTCAGCTCGCACGGAGATCTATAGTCTGAACGGCAAATGTTGGAAGGAAATTGTTGAACTTCCTGATATTCTTAAGGAGTCTGTGAACTTTATCAAATGTGGAGTCTGCAAGGGAATTGTATACTGGCTGATACCAAATATATATGAAGTCAATGTTCTCTGTTTGAACCTCAGCACTACGCTTTTCATGAAGCTGGAGCTACCCAATGCAATGATGGAGGGTGGATCTCTACTGTTGAGTCGAATCAAGGAAAATTTGTGTCTGTTTCACTGCCATACGACAGATAAGGTGGAGCATGTTGTTGACATCTGGGTTTTGGAAAACAACTCTTTCAAAAAGGAACACTTGGCAGTCTCAAAGGGAAGGGAGATTGTTCCAATTGGGTTTGGGCTGCATAATGAACTGATTCTTGTGAAACTTGATGAACACAATGAGTATAGACTGCAGCTATATGATTTGGAATCAAATGAGATGACTGACACCGGTATCATAATGGCTGAAAAGCTGTTTGCTGATACTTATACTGAAAGCTTACTCCTGATCAACAATCCTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

186

Amino Acids

21.35

Weight (kDa)

5.14

Isoelectric Point (pI)

22.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 4 - 108 8.3e-07 F-box associated beta propeller domain
FBA_3 PF08268 4 - 165 6.5e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 123
AclWI GGATC 1 cut(s) 235
AcsI RAATTY 1 cut(s) 256
AflII CTTAAG 1 cut(s) 74
AgeI ACCGGT 1 cut(s) 485
AgsI TTSAA 3 cut(s) 59, 169, 337
AluBI AGCT 6 cut(s) 8, 196, 202, 451, 508, 534
AluI AGCT 6 cut(s) 8, 196, 202, 451, 508, 534
Alw26I GTCTC 1 cut(s) 361
AlwI GGATC 1 cut(s) 235
ApeKI GCWGC 2 cut(s) 394, 448
ApoI RAATTY 1 cut(s) 256
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
AsiGI ACCGGT 1 cut(s) 485
Asp700I GAANNNNTTC 1 cut(s) 408
BaeI ACNNNNGTAYC 2 cut(s) 472, 505
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 2 cut(s) 381, 460
BccI CCATC 1 cut(s) 211
BceAI ACGGC 1 cut(s) 49
BclI TGATCA 1 cut(s) 543
BcoDI GTCTC 1 cut(s) 361
BfmI CTRYAG 2 cut(s) 22, 446
BfrI CTTAAG 1 cut(s) 74
BglII AGATCT 1 cut(s) 18
BisI GCNGC 2 cut(s) 395, 449
BlsI GCNGC 2 cut(s) 396, 450
BpmI CTGGAG 1 cut(s) 218
Bpu10I CCTNAGC 1 cut(s) 173
BsaWI WCCGGW 1 cut(s) 485
Bse118I RCCGGY 1 cut(s) 485
Bse1I ACTGG 1 cut(s) 131
Bse3DI GCAATG 1 cut(s) 219
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 187
BseNI ACTGG 1 cut(s) 131
BseXI GCAGC 2 cut(s) 381, 460
BshTI ACCGGT 1 cut(s) 485
BsiSI CCGG 1 cut(s) 486
BsmAI GTCTC 1 cut(s) 361
Bsp143I GATC 3 cut(s) 18, 227, 543
BspCNI CTCAG 1 cut(s) 186
BspHI TCATGA 1 cut(s) 189
BspMAI CTGCAG 1 cut(s) 450
BspPI GGATC 1 cut(s) 235
BspTI CTTAAG 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 485
BsrI ACTGG 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 485
BssMI GATC 3 cut(s) 18, 227, 543
BssNAI GTATAC 1 cut(s) 124
Bst1107I GTATAC 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 237
BstAFI CTTAAG 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 173
BstKTI GATC 3 cut(s) 21, 230, 546
BstMAI GTCTC 1 cut(s) 361
BstMBI GATC 3 cut(s) 18, 227, 543
BstNSI RCATGY 1 cut(s) 302
BstSFI CTRYAG 2 cut(s) 22, 446
BstV1I GCAGC 2 cut(s) 381, 460
BstX2I RGATCY 2 cut(s) 18, 227
BstYI RGATCY 2 cut(s) 18, 227
BstZ17I GTATAC 1 cut(s) 124
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 10
CciI TCATGA 1 cut(s) 189
Cfr10I RCCGGY 1 cut(s) 485
CspAI ACCGGT 1 cut(s) 485
CviAII CATG 2 cut(s) 190, 299
CviJI RGCY 9 cut(s) 8, 130, 196, 202, 394, 451, 500, 508, 534
CviKI_1 RGCY 9 cut(s) 8, 130, 196, 202, 394, 451, 500, 508, 534
DdeI CTNAG 1 cut(s) 173
DpnI GATC 3 cut(s) 20, 229, 545
DpnII GATC 3 cut(s) 18, 227, 543
FaeI CATG 2 cut(s) 193, 302
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FatI CATG 2 cut(s) 189, 298
FbaI TGATCA 1 cut(s) 543
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 2 cut(s) 395, 449
Fsp4HI GCNGC 2 cut(s) 395, 449
GluI GCNGC 2 cut(s) 395, 449
GsuI CTGGAG 1 cut(s) 218
HapII CCGG 1 cut(s) 486
Hin1II CATG 2 cut(s) 193, 302
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HindIII AAGCTT 1 cut(s) 532
HinfI GANTC 6 cut(s) 80, 105, 241, 246, 409, 464
HpaII CCGG 1 cut(s) 486
Hpy166II GTNNAC 3 cut(s) 88, 124, 307
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 3 cut(s) 65, 190, 541
Hpy8I GTNNAC 3 cut(s) 88, 124, 307
HpyAV CCTTC 2 cut(s) 40, 360
HpyCH4III ACNGT 1 cut(s) 237
HpyCH4V TGCA 4 cut(s) 111, 212, 397, 448
HpyF3I CTNAG 1 cut(s) 173
Hsp92II CATG 2 cut(s) 193, 302
Ksp22I TGATCA 1 cut(s) 543
Kzo9I GATC 3 cut(s) 18, 227, 543
LmnI GCTCC 2 cut(s) 199, 295
LpnPI CCDG 6 cut(s) 78, 112, 182, 298, 499, 554
Lsp1109I GCAGC 2 cut(s) 381, 460
MalI GATC 3 cut(s) 20, 229, 545
MboI GATC 3 cut(s) 18, 227, 543
MfeI CAATTG 1 cut(s) 381
MflI RGATCY 2 cut(s) 18, 227
MluCI AATT 5 cut(s) 51, 117, 256, 381, 556
MlyI GAGTC 3 cut(s) 89, 114, 250
MmeI TCCRAC 1 cut(s) 23
MnlI CCTC 2 cut(s) 182, 214
MroXI GAANNNNTTC 1 cut(s) 408
MseI TTAA 1 cut(s) 75
MspCI CTTAAG 1 cut(s) 74
MspI CCGG 1 cut(s) 486
MunI CAATTG 1 cut(s) 381
NdeII GATC 3 cut(s) 18, 227, 543
NlaIII CATG 2 cut(s) 193, 302
NspI RCATGY 1 cut(s) 302
PagI TCATGA 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 408
PfeI GAWTC 3 cut(s) 246, 409, 464
PinAI ACCGGT 1 cut(s) 485
PkrI GCNGC 2 cut(s) 396, 450
PleI GAGTC 3 cut(s) 88, 113, 249
PpsI GAGTC 3 cut(s) 88, 113, 249
PstI CTGCAG 1 cut(s) 450
PsuI RGATCY 2 cut(s) 18, 227
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 2 cut(s) 395, 449
Sau3AI GATC 3 cut(s) 18, 227, 543
SchI GAGTC 3 cut(s) 89, 114, 250
SetI ASST 8 cut(s) 10, 174, 198, 204, 294, 453, 510, 536
SfcI CTRYAG 2 cut(s) 22, 446
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 5 cut(s) 51, 117, 256, 381, 556
TaaI ACNGT 1 cut(s) 237
TaqI TCGA 1 cut(s) 244
TasI AATT 5 cut(s) 51, 117, 256, 381, 556
TfiI GAWTC 3 cut(s) 246, 409, 464
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 1 cut(s) 278
TseI GCWGC 2 cut(s) 394, 448
TspDTI ATGAA 5 cut(s) 162, 178, 206, 417, 441
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 1 cut(s) 278
Vha464I CTTAAG 1 cut(s) 74
XapI RAATTY 1 cut(s) 256
XceI RCATGY 1 cut(s) 302
XcmI CCANNNNNNNNNTGG 1 cut(s) 214
XmiI GTMKAC 1 cut(s) 123
XmnI GAANNNNTTC 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.