Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0015192

Physical Location & Seq

Genomic Coordinates Reverse (-)

60247689 .. 60253290

Gene Structure 5602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00327500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGAAAGACACAGAAAATTATTCTTCTCTCCCTCATATCCCTAATGATATTGTCAAGGATATTCTGAAAAGGCTATGTACCAAATCGCTGGTCCGATTTCTAAGTGTGTCAAAGGACTGGAATCATATAATTTCAGACCCACAATTTGCTGCCAGCCATCTGAGTCACAATATATTACAGTCTACAAATCTTTCTTTAATCTCTTATCACAAAAAGCTCGACCCTTCTGAGTACCAGTTAGCTACCAAGGATGATCTTCATCTCTTTCCTAACGGCCTTCCAATGGGAAGCGTGGAGGTTGAACACCCGACTGGGAAAAAAATTCCTTTTGAGATATTTGGCTCAGTTGATGGGCTAATCTGCATCTCTGATAAACCTTGCACATTAGCAAGTCCTGTCTACATTTGCAATCCATCGATAAGAAAGTATGTGCTGCTTCCAAAGTCCCCCTTCCTCACTCCTGACTTCTCTGATGATCGTAATCTTCTTTCATTTGGGTTTAGCCCAGACCGCGATGATTACATAGTTGTCAGAACTGTGTGGGGCAAAAGTTCTGATGAAATGTCAGCTCGCACGGAGATCTATAGTCTGAACGGCAAATGTTGGAAGGAAATTGTTGAACTTCCTGATATTCTTAAGGAGTCTGTGAACTTTATCAAATGTGTAGTCTGCAAGGGAATTGTATACTGGCTGATACCAAATATATATGAAGTCCATGTTCTCTGTTTGAACCTCAGCACTATGCTTTTCATGAAGCTGGAGCTACCCAATGCAATGATGGAGGGTGGATCTCTACTGTTGAGTCGATTCAAGGAAAATTTGTGTCTGTTTCACTGCCATACGACAGATAAGGTGGAGCATGTTGTTGACATCTGGGTTTTGGAAAACAACTCTTTCAAAAAGGAACACTTGGCAGTCTCAAAGGGAAGGGAGATTGTTCCAATTGGGTTTGGGCTGCATAATGAACTGATTCTTGTGAAACTTGATGAACACAATGAGTATAGACTGCAGCTATATGATTTGGAATCAAATGAGATGACTGACACCGGTATCATAGTGGCTGAAAAGCTGTTTGCTGATACTTATACTGAAAGCTTACTCCTGATCAACAATCCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

373

Amino Acids

42.52

Weight (kDa)

5.61

Isoelectric Point (pI)

31.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	11 - 49	7.7e-09	F-box domain
FBA_3	PF08268	101 - 352	2.2e-19	F-box associated beta propeller domain
FBA_1	PF07734	115 - 295	1e-12	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33705
rosa_laevigata	RLG00000012397 RLG00000030408
rosa_multiflora	Rmu_sc0001817.1_g000001 Rmu_sc0003410.1_g000051 Rmu_sc0027805.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090460 Rroxscaffold_4G00327500
rosa_samantha	Rh1AG045700 Rh1AG046400 Rh1BG044900 Rh1CG050600 Rh1DG052900 Rh1DG054900 Rh6DG318500
rosa_wichuraiana	Rw1G004070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	182, 399, 684
AccII	CGCG	1 cut(s)	513
AciI	CCGC	1 cut(s)	511
AclWI	GGATC	1 cut(s)	796
AcsI	RAATTY	2 cut(s)	321, 817
AfaI	GTAC	2 cut(s)	79, 233
AfiI	CCNNNNNNNGG	1 cut(s)	283
AflII	CTTAAG	1 cut(s)	635
AgeI	ACCGGT	1 cut(s)	1046
AgsI	TTSAA	5 cut(s)	302, 620, 730, 811, 898
AluBI	AGCT	8 cut(s)	217, 242, 569, 757, 763, 1012, 1069, 1095
AluI	AGCT	8 cut(s)	217, 242, 569, 757, 763, 1012, 1069, 1095
Alw26I	GTCTC	1 cut(s)	922
AlwI	GGATC	1 cut(s)	796
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	4 cut(s)	149, 433, 955, 1009
ApoI	RAATTY	2 cut(s)	321, 817
ArsI	GACNNNNNNTTYG	6 cut(s)	75, 107, 128, 160, 651, 683
AsiGI	ACCGGT	1 cut(s)	1046
Asp700I	GAANNNNTTC	1 cut(s)	969
AspS9I	GGNCC	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	91
BaeI	ACNNNNGTAYC	2 cut(s)	1033, 1066
BbvCI	CCTCAGC	1 cut(s)	734
BbvI	GCAGC	4 cut(s)	136, 420, 942, 1021
BccI	CCATC	4 cut(s)	165, 344, 421, 772
BceAI	ACGGC	2 cut(s)	289, 610
BclI	TGATCA	1 cut(s)	1104
BcoDI	GTCTC	1 cut(s)	922
BfmI	CTRYAG	2 cut(s)	583, 1007
BfrI	CTTAAG	1 cut(s)	635
BglII	AGATCT	1 cut(s)	579
BisI	GCNGC	4 cut(s)	150, 434, 956, 1010
BlsI	GCNGC	4 cut(s)	151, 435, 957, 1011
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	91
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	372
BmuI	ACTGGG	1 cut(s)	321
BpmI	CTGGAG	1 cut(s)	779
Bpu10I	CCTNAGC	1 cut(s)	734
Bsa29I	ATCGAT	1 cut(s)	416
BsaBI	GATNNNNATC	2 cut(s)	258, 480
BsaJI	CCNNGG	1 cut(s)	246
BsaWI	WCCGGW	1 cut(s)	1046
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse118I	RCCGGY	1 cut(s)	1046
Bse1I	ACTGG	4 cut(s)	122, 235, 316, 692
Bse3DI	GCAATG	1 cut(s)	780
Bse8I	GATNNNNATC	2 cut(s)	258, 480
BseCI	ATCGAT	1 cut(s)	416
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	256
BseJI	GATNNNNATC	2 cut(s)	258, 480
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	780
BseMII	CTCAG	4 cut(s)	152, 219, 357, 748
BseNI	ACTGG	4 cut(s)	122, 235, 316, 692
BseXI	GCAGC	4 cut(s)	136, 420, 942, 1021
Bsh1236I	CGCG	1 cut(s)	513
BshFI	GGCC	1 cut(s)	276
BshTI	ACCGGT	1 cut(s)	1046
BshVI	ATCGAT	1 cut(s)	416
BsiSI	CCGG	1 cut(s)	1047
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	922
BsmFI	GGGAC	1 cut(s)	430
BsnI	GGCC	1 cut(s)	276
Bsp143I	GATC	5 cut(s)	253, 475, 579, 788, 1104
BspACI	CCGC	1 cut(s)	511
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	4 cut(s)	153, 220, 356, 747
BspDI	ATCGAT	1 cut(s)	416
BspFNI	CGCG	1 cut(s)	513
BspHI	TCATGA	1 cut(s)	750
BspMAI	CTGCAG	1 cut(s)	1011
BspPI	GGATC	1 cut(s)	796
BspTI	CTTAAG	1 cut(s)	635
BsrDI	GCAATG	1 cut(s)	780
BsrFI	RCCGGY	1 cut(s)	1046
BsrI	ACTGG	4 cut(s)	122, 235, 316, 692
BssAI	RCCGGY	1 cut(s)	1046
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	5 cut(s)	253, 475, 579, 788, 1104
BssNAI	GTATAC	1 cut(s)	685
BssT1I	CCWWGG	1 cut(s)	246
Bst1107I	GTATAC	1 cut(s)	685
Bst4CI	ACNGT	3 cut(s)	180, 538, 798
BstAFI	CTTAAG	1 cut(s)	635
BstC8I	GCNNGC	2 cut(s)	154, 571
BstDEI	CTNAG	5 cut(s)	101, 161, 228, 343, 734
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	513
BstKTI	GATC	5 cut(s)	256, 478, 582, 791, 1107
BstMAI	GTCTC	1 cut(s)	922
BstMBI	GATC	5 cut(s)	253, 475, 579, 788, 1104
BstMWI	GCNNNNNNNGC	1 cut(s)	510
BstNSI	RCATGY	1 cut(s)	863
BstSFI	CTRYAG	2 cut(s)	583, 1007
BstUI	CGCG	1 cut(s)	513
BstV1I	GCAGC	4 cut(s)	136, 420, 942, 1021
BstX2I	RGATCY	2 cut(s)	579, 788
BstXI	CCANNNNNNTGG	1 cut(s)	88
BstYI	RGATCY	2 cut(s)	579, 788
BstZ17I	GTATAC	1 cut(s)	685
Bsu15I	ATCGAT	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	276
BsuTUI	ATCGAT	1 cut(s)	416
BtgZI	GCGATG	1 cut(s)	528
BtsCI	GGATG	1 cut(s)	256
BtsI	GCAGTG	1 cut(s)	832
BtsIMutI	CAGTG	1 cut(s)	832
Cac8I	GCNNGC	2 cut(s)	154, 571
CciI	TCATGA	1 cut(s)	750
Cfr10I	RCCGGY	1 cut(s)	1046
Cfr13I	GGNCC	1 cut(s)	91
ClaI	ATCGAT	1 cut(s)	416
Csp6I	GTAC	2 cut(s)	78, 232
CspAI	ACCGGT	1 cut(s)	1046
CviAII	CATG	3 cut(s)	716, 751, 860
CviQI	GTAC	2 cut(s)	78, 232
DdeI	CTNAG	5 cut(s)	101, 161, 228, 343, 734
DpnI	GATC	5 cut(s)	255, 477, 581, 790, 1106
DpnII	GATC	5 cut(s)	253, 475, 579, 788, 1104
Eco130I	CCWWGG	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	3 cut(s)	719, 754, 863
FalI	AAGNNNNNCTT	4 cut(s)	434, 466, 893, 925
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	3 cut(s)	715, 750, 859
FbaI	TGATCA	1 cut(s)	1104
FblI	GTMKAC	3 cut(s)	182, 399, 684
Fnu4HI	GCNGC	4 cut(s)	150, 434, 956, 1010
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	4 cut(s)	150, 434, 956, 1010
GluI	GCNGC	4 cut(s)	150, 434, 956, 1010
GsuI	CTGGAG	1 cut(s)	779
HaeIII	GGCC	1 cut(s)	276
HapII	CCGG	1 cut(s)	1047
Hin1II	CATG	3 cut(s)	719, 754, 863
HincII	GTYRAC	1 cut(s)	868
HindII	GTYRAC	1 cut(s)	868
HindIII	AAGCTT	1 cut(s)	1093
HinfI	GANTC	7 cut(s)	121, 163, 641, 802, 807, 970, 1025
HpaII	CCGG	1 cut(s)	1047
Hpy166II	GTNNAC	5 cut(s)	183, 400, 649, 685, 868
Hpy188III	TCNNGA	4 cut(s)	461, 626, 751, 1102
Hpy8I	GTNNAC	5 cut(s)	183, 400, 649, 685, 868
HpyAV	CCTTC	5 cut(s)	234, 287, 460, 601, 921
HpyCH4III	ACNGT	3 cut(s)	180, 538, 798
HpyCH4V	TGCA	7 cut(s)	363, 381, 408, 672, 773, 958, 1009
HpyF10VI	GCNNNNNNNGC	1 cut(s)	510
HpyF3I	CTNAG	5 cut(s)	101, 161, 228, 343, 734
Hsp92II	CATG	3 cut(s)	719, 754, 863
Ksp22I	TGATCA	1 cut(s)	1104
Kzo9I	GATC	5 cut(s)	253, 475, 579, 788, 1104
LmnI	GCTCC	2 cut(s)	760, 856
Lsp1109I	GCAGC	4 cut(s)	136, 420, 942, 1021
LweI	GCATC	1 cut(s)	372
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	5 cut(s)	255, 477, 581, 790, 1106
MboI	GATC	5 cut(s)	253, 475, 579, 788, 1104
MboII	GAAGA	3 cut(s)	15, 248, 476
MfeI	CAATTG	1 cut(s)	942
MflI	RGATCY	2 cut(s)	579, 788
MluCI	AATT	9 cut(s)	16, 129, 143, 321, 612, 678, 817, 942, 1117
MlyI	GAGTC	3 cut(s)	172, 650, 811
MmeI	TCCRAC	1 cut(s)	584
MnlI	CCTC	5 cut(s)	42, 289, 464, 743, 775
MroXI	GAANNNNTTC	1 cut(s)	969
MseI	TTAA	2 cut(s)	197, 636
MspCI	CTTAAG	1 cut(s)	635
MspI	CCGG	1 cut(s)	1047
MunI	CAATTG	1 cut(s)	942
MvnI	CGCG	1 cut(s)	513
MwoI	GCNNNNNNNGC	1 cut(s)	510
NdeII	GATC	5 cut(s)	253, 475, 579, 788, 1104
NlaIII	CATG	3 cut(s)	719, 754, 863
NmuCI	GTSAC	1 cut(s)	164
NspI	RCATGY	1 cut(s)	863
PagI	TCATGA	1 cut(s)	750
PdmI	GAANNNNTTC	1 cut(s)	969
PfeI	GAWTC	4 cut(s)	121, 807, 970, 1025
PinAI	ACCGGT	1 cut(s)	1046
PkrI	GCNGC	4 cut(s)	151, 435, 957, 1011
PleI	GAGTC	3 cut(s)	171, 649, 810
PpsI	GAGTC	3 cut(s)	171, 649, 810
PspPI	GGNCC	1 cut(s)	91
PstI	CTGCAG	1 cut(s)	1011
PsuI	RGATCY	2 cut(s)	579, 788
RsaI	GTAC	2 cut(s)	79, 233
RsaNI	GTAC	2 cut(s)	78, 232
SaqAI	TTAA	2 cut(s)	197, 636
SatI	GCNGC	4 cut(s)	150, 434, 956, 1010
Sau3AI	GATC	5 cut(s)	253, 475, 579, 788, 1104
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	3 cut(s)	172, 650, 811
SfaNI	GCATC	1 cut(s)	372
SfcI	CTRYAG	2 cut(s)	583, 1007
SinI	GGWCC	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	635
SmoI	CTYRAG	1 cut(s)	635
Sse9I	AATT	9 cut(s)	16, 129, 143, 321, 612, 678, 817, 942, 1117
SsiI	CCGC	1 cut(s)	511
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	3 cut(s)	180, 538, 798
TaqI	TCGA	3 cut(s)	219, 416, 805
TasI	AATT	9 cut(s)	16, 129, 143, 321, 612, 678, 817, 942, 1117
TfiI	GAWTC	4 cut(s)	121, 807, 970, 1025
Tru1I	TTAA	2 cut(s)	197, 636
Tru9I	TTAA	2 cut(s)	197, 636
TscAI	CASTG	1 cut(s)	839
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	4 cut(s)	149, 433, 955, 1009
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	9 cut(s)	17, 248, 480, 573, 723, 739, 767, 978, 1002
TspGWI	ACGGA	1 cut(s)	590
TspRI	CASTG	1 cut(s)	839
Vha464I	CTTAAG	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	2 cut(s)	321, 817
XceI	RCATGY	1 cut(s)	863
XcmI	CCANNNNNNNNNTGG	1 cut(s)	775
XmiI	GTMKAC	3 cut(s)	182, 399, 684
XmnI	GAANNNNTTC	1 cut(s)	969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.