Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0015192

Physical Location & Seq

Genomic Coordinates Reverse (-)

7634492 .. 7635465

Gene Structure 974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G004070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGGAAGCGTGGAGGTTGAACACCCGACTGGGAAAAAAATTCCTTTTGAGATATTTGGTTCAGTTGATGGGCTAATCTGCATCTCTGATAAACCTTGCACATTAGCAAGTCCTGTCTACATTTGCAATCCATCGATAAGAAAGTATGTGCTGCTTCCAAAGTCCCCCTTCCTCACTCCTGACTTCTCTGATGATCATAATCTTCTTTCATTTGGGTCTAGCCCAGACCGCGATGATTACATAGTTGTCAGAACTGTGTGGGGCAAAAGTTCTGATGAAATGTCAGCTCGCACGGAGATGTCAGCTCGCACGGAGATCTATAGTCTGAACGGCAAATGTTGGAAGGCAATTGTTGAACTTCCTGATATTCTTAAGGAGTCTGTGAACTTTATCAAATGTGGAGTCTGCAAGGGAATTGTATACTGGCTGATACCAAATATATATGAAGTCCATGTTCTCTGTTTGAACCTCAGCACTACGCTTTTCATGAAGCTGGAGCTACCCAATGCAATGATGGAGGGTGGATCTCTACTGTTGAGTCGATTCAAGGAAAATTTGTGTCTGTTTCACTGCCATACGACAGATAAGGTGGAGCATGTTGTTGACATCTGGGTTTTGGAAAACAACTCTTTCAAAAAGGAACACTTGGCAGTCTCAAAGGGAAGGGAGATTGTTCCAATTGGGTTTGGGCTGCATAATGAACTGATTCTTGTGAAACTTGATGAACACAATGAGTATAGACTGCAGCTATATGATTTGGAATCAAATGAGATGACTGACACCGGTATCATAATGGCTGAAAAGCTGTTTGCTGATACTTATACTGAAAGCTTACTCCTGATCAACAATCCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

285

Amino Acids

32.28

Weight (kDa)

5.22

Isoelectric Point (pI)

26.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	11 - 263	1.1e-17	F-box associated beta propeller domain
FBA_1	PF07734	21 - 207	1.2e-11	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33705
rosa_laevigata	RLG00000012397 RLG00000030408
rosa_multiflora	Rmu_sc0001817.1_g000001 Rmu_sc0003410.1_g000051 Rmu_sc0027805.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090460 Rroxscaffold_4G00327500
rosa_samantha	Rh1AG045700 Rh1AG046400 Rh1BG044900 Rh1CG050600 Rh1DG052900 Rh1DG054900 Rh6DG318500
rosa_wichuraiana	Rw1G004070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	117, 420
AccII	CGCG	1 cut(s)	231
AciI	CCGC	1 cut(s)	229
AclWI	GGATC	1 cut(s)	532
AcsI	RAATTY	2 cut(s)	39, 553
AflII	CTTAAG	1 cut(s)	371
AgeI	ACCGGT	1 cut(s)	782
AgsI	TTSAA	5 cut(s)	20, 356, 466, 547, 634
AluBI	AGCT	7 cut(s)	287, 305, 493, 499, 748, 805, 831
AluI	AGCT	7 cut(s)	287, 305, 493, 499, 748, 805, 831
Alw26I	GTCTC	1 cut(s)	658
AlwI	GGATC	1 cut(s)	532
ApeKI	GCWGC	3 cut(s)	151, 691, 745
ApoI	RAATTY	2 cut(s)	39, 553
ArsI	GACNNNNNNTTYG	2 cut(s)	387, 419
AsiGI	ACCGGT	1 cut(s)	782
Asp700I	GAANNNNTTC	1 cut(s)	705
BaeI	ACNNNNGTAYC	2 cut(s)	769, 802
BbvCI	CCTCAGC	1 cut(s)	470
BbvI	GCAGC	3 cut(s)	138, 678, 757
BccI	CCATC	3 cut(s)	62, 139, 508
BceAI	ACGGC	1 cut(s)	346
BclI	TGATCA	2 cut(s)	193, 840
BcoDI	GTCTC	1 cut(s)	658
BfaI	CTAG	1 cut(s)	219
BfmI	CTRYAG	2 cut(s)	319, 743
BfrI	CTTAAG	1 cut(s)	371
BglII	AGATCT	1 cut(s)	315
BisI	GCNGC	3 cut(s)	152, 692, 746
BlsI	GCNGC	3 cut(s)	153, 693, 747
BmrI	ACTGGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	90
BmuI	ACTGGG	1 cut(s)	39
BpmI	CTGGAG	1 cut(s)	515
Bpu10I	CCTNAGC	1 cut(s)	470
Bsa29I	ATCGAT	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	198
BsaWI	WCCGGW	1 cut(s)	782
Bse118I	RCCGGY	1 cut(s)	782
Bse1I	ACTGG	2 cut(s)	34, 428
Bse3DI	GCAATG	1 cut(s)	516
Bse8I	GATNNNNATC	1 cut(s)	198
BseCI	ATCGAT	1 cut(s)	134
BseJI	GATNNNNATC	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	1 cut(s)	484
BseNI	ACTGG	2 cut(s)	34, 428
BseXI	GCAGC	3 cut(s)	138, 678, 757
Bsh1236I	CGCG	1 cut(s)	231
BshTI	ACCGGT	1 cut(s)	782
BshVI	ATCGAT	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	783
BslFI	GGGAC	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	658
BsmFI	GGGAC	1 cut(s)	148
Bsp143I	GATC	4 cut(s)	193, 315, 524, 840
BspACI	CCGC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	483
BspDI	ATCGAT	1 cut(s)	134
BspFNI	CGCG	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	486
BspMAI	CTGCAG	1 cut(s)	747
BspPI	GGATC	1 cut(s)	532
BspTI	CTTAAG	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	516
BsrFI	RCCGGY	1 cut(s)	782
BsrI	ACTGG	2 cut(s)	34, 428
BssAI	RCCGGY	1 cut(s)	782
BssMI	GATC	4 cut(s)	193, 315, 524, 840
BssNAI	GTATAC	1 cut(s)	421
Bst1107I	GTATAC	1 cut(s)	421
Bst4CI	ACNGT	2 cut(s)	256, 534
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	2 cut(s)	289, 307
BstDEI	CTNAG	1 cut(s)	470
BstFNI	CGCG	1 cut(s)	231
BstKTI	GATC	4 cut(s)	196, 318, 527, 843
BstMAI	GTCTC	1 cut(s)	658
BstMBI	GATC	4 cut(s)	193, 315, 524, 840
BstMWI	GCNNNNNNNGC	1 cut(s)	228
BstNSI	RCATGY	1 cut(s)	599
BstSFI	CTRYAG	2 cut(s)	319, 743
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	3 cut(s)	138, 678, 757
BstX2I	RGATCY	2 cut(s)	315, 524
BstYI	RGATCY	2 cut(s)	315, 524
BstZ17I	GTATAC	1 cut(s)	421
Bsu15I	ATCGAT	1 cut(s)	134
BsuTUI	ATCGAT	1 cut(s)	134
BtgZI	GCGATG	1 cut(s)	246
BtsI	GCAGTG	1 cut(s)	568
BtsIMutI	CAGTG	1 cut(s)	568
Cac8I	GCNNGC	2 cut(s)	289, 307
CciI	TCATGA	1 cut(s)	486
Cfr10I	RCCGGY	1 cut(s)	782
ClaI	ATCGAT	1 cut(s)	134
CspAI	ACCGGT	1 cut(s)	782
CviAII	CATG	3 cut(s)	452, 487, 596
DdeI	CTNAG	1 cut(s)	470
DpnI	GATC	4 cut(s)	195, 317, 526, 842
DpnII	GATC	4 cut(s)	193, 315, 524, 840
FaeI	CATG	3 cut(s)	455, 490, 599
FalI	AAGNNNNNCTT	4 cut(s)	152, 184, 629, 661
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	3 cut(s)	451, 486, 595
FbaI	TGATCA	2 cut(s)	193, 840
FblI	GTMKAC	2 cut(s)	117, 420
Fnu4HI	GCNGC	3 cut(s)	152, 692, 746
Fsp4HI	GCNGC	3 cut(s)	152, 692, 746
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	3 cut(s)	152, 692, 746
GsuI	CTGGAG	1 cut(s)	515
HapII	CCGG	1 cut(s)	783
Hin1II	CATG	3 cut(s)	455, 490, 599
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HindIII	AAGCTT	1 cut(s)	829
HinfI	GANTC	6 cut(s)	377, 402, 538, 543, 706, 761
HpaII	CCGG	1 cut(s)	783
Hpy166II	GTNNAC	4 cut(s)	118, 385, 421, 604
Hpy188I	TCNGA	5 cut(s)	88, 190, 251, 274, 327
Hpy188III	TCNNGA	4 cut(s)	179, 362, 487, 838
Hpy8I	GTNNAC	4 cut(s)	118, 385, 421, 604
HpyAV	CCTTC	3 cut(s)	178, 337, 657
HpyCH4III	ACNGT	2 cut(s)	256, 534
HpyCH4V	TGCA	7 cut(s)	81, 99, 126, 408, 509, 694, 745
HpyF10VI	GCNNNNNNNGC	1 cut(s)	228
HpyF3I	CTNAG	1 cut(s)	470
Hsp92II	CATG	3 cut(s)	455, 490, 599
Ksp22I	TGATCA	2 cut(s)	193, 840
Kzo9I	GATC	4 cut(s)	193, 315, 524, 840
LmnI	GCTCC	2 cut(s)	496, 592
Lsp1109I	GCAGC	3 cut(s)	138, 678, 757
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	1 cut(s)	219
MalI	GATC	4 cut(s)	195, 317, 526, 842
MboI	GATC	4 cut(s)	193, 315, 524, 840
MboII	GAAGA	1 cut(s)	194
MfeI	CAATTG	2 cut(s)	348, 678
MflI	RGATCY	2 cut(s)	315, 524
MluCI	AATT	6 cut(s)	39, 348, 414, 553, 678, 853
MlyI	GAGTC	3 cut(s)	386, 411, 547
MmeI	TCCRAC	1 cut(s)	320
MnlI	CCTC	4 cut(s)	7, 182, 479, 511
MroXI	GAANNNNTTC	1 cut(s)	705
MseI	TTAA	1 cut(s)	372
MslI	CAYNNNNRTG	1 cut(s)	296
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	1 cut(s)	783
MunI	CAATTG	2 cut(s)	348, 678
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	228
NdeII	GATC	4 cut(s)	193, 315, 524, 840
NlaIII	CATG	3 cut(s)	455, 490, 599
NspI	RCATGY	1 cut(s)	599
PagI	TCATGA	1 cut(s)	486
PdmI	GAANNNNTTC	1 cut(s)	705
PfeI	GAWTC	3 cut(s)	543, 706, 761
PinAI	ACCGGT	1 cut(s)	782
PkrI	GCNGC	3 cut(s)	153, 693, 747
PleI	GAGTC	3 cut(s)	385, 410, 546
PpsI	GAGTC	3 cut(s)	385, 410, 546
PstI	CTGCAG	1 cut(s)	747
PsuI	RGATCY	2 cut(s)	315, 524
RseI	CAYNNNNRTG	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	3 cut(s)	152, 692, 746
Sau3AI	GATC	4 cut(s)	193, 315, 524, 840
SchI	GAGTC	3 cut(s)	386, 411, 547
SfaNI	GCATC	1 cut(s)	90
SfcI	CTRYAG	2 cut(s)	319, 743
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	6 cut(s)	39, 348, 414, 553, 678, 853
SsiI	CCGC	1 cut(s)	229
SspMI	CTAG	1 cut(s)	219
TaaI	ACNGT	2 cut(s)	256, 534
TaqI	TCGA	2 cut(s)	134, 541
TasI	AATT	6 cut(s)	39, 348, 414, 553, 678, 853
TfiI	GAWTC	3 cut(s)	543, 706, 761
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	575
TseI	GCWGC	3 cut(s)	151, 691, 745
TspDTI	ATGAA	7 cut(s)	198, 291, 459, 475, 503, 714, 738
TspGWI	ACGGA	2 cut(s)	308, 326
TspRI	CASTG	1 cut(s)	575
Vha464I	CTTAAG	1 cut(s)	371
XapI	RAATTY	2 cut(s)	39, 553
XceI	RCATGY	1 cut(s)	599
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XmiI	GTMKAC	2 cut(s)	117, 420
XmnI	GAANNNNTTC	1 cut(s)	705
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.