Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0015192

Physical Location & Seq

Genomic Coordinates Forward (+)

5959595 .. 5965213

Gene Structure 5619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG044900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGTGTTATTCTTGGGCATTACAATTTCACTTGTTTTCCCGTAGCCGATCAGTTCAACACCGCGCCTCGCATTTCGTCGCCGCACAATCTCATCGCCGAGCTTGGTTTCGAGTTGCGCCTCGCATTTCAGCCATTTCTGTGCCAGTAGATAAAGGTGTCAGGCTTAGTGATGCTTCAAAGAAGTTAGGGGAGAAGTTCGCTACAGGAGCTTTTGTTGTTAAGGGGATGAAAGACACAGAAAATTATTCTTCTCCCCCTCATGTCCCTAATGATATTGTCAAGGATATTCTGAAAAGGCTATGTACCAAATCGCTGGTCCGATTTCTAAGTGTATCAAAGGACTGGAATCATATAATTTCAGACCCACAATTTGCTGCCAGCCATCTGAGTCACAATATATTACAGTCTACAAATCTTTCTTTAATCTCTTATCACAAAAAGCTCGACCCTTCTGAGTACCAGTTAGCTACCAAGGATGATCTTCATCTCTTTCCTAACGGCCTTCCAATGGGAAGTGTGGAGGTTGAACACCCGACTGGGAAAAAAATTCCTTTTGAGATATTTGGCTCAGTTGATGGGCTAATCTGCATCTCTGATAAACCTTGCACATTAACAAGTCCTGTCTACATTTGCAATCCATCGATAAGAAAGTATGTGCTACTTCCAAAGTCCCTCTTCCTCACTCCTGACTTCTCTGATGATCATAATCTTCTTTCATTTGGGTTTAGCCCAGACCGCGATGATTACATAGTTGTCAGAACTGTGTGGGGCAAAAGTTCTGAAGAAATGTCAGCTCGCATGGAGATCTATAGTCTGAACAGCAAATGTTGGAAGGAAATTGTTGAACTTCCTGATATTCTCAAGGAGTCTGAGAACTTTATCAAATGTGGAGTCTGCAAGGGAATTGTATACTGGCTGATACCAGATATATATGAAGTCCATGTTCTCTGTTTGAACCTCAGCACTACGCTTTTCATGAAGCTGGCGCTACCCAATGCAATGATGGAGGGTGGATCTCTACTGTTGAGTCAATTCAAGGAAAATTTGTGTCTGTTTCACTGCCATACGACAGATAAGGTGGAGCATGTTGTTGACATCTGGGTTTTGGAAAACAACTCTTTCAAAAAGGAACACTTGGCAGTCTCAAGGGGAAGGGAGATTGTTCCAATTGGGTTTGGGCTGCATAATGAACTGATTCTTGTGAAACTTGATGAGCACAATGAGTATAGACTGCAGCTATATGATTTGGAATCAAATGAGATGACTGACACCGGTATCATAATGGCTGAAAAGCTGTTTGCTGATACTTATACTGAAAGCTTACTCCTGATCAACAATCCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

448

Amino Acids

50.93

Weight (kDa)

6.44

Isoelectric Point (pI)

33.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	88 - 124	4.1e-08	F-box domain
FBA_3	PF08268	177 - 426	6.7e-20	F-box associated beta propeller domain
FBA_1	PF07734	190 - 370	1.2e-12	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33705
rosa_laevigata	RLG00000012397 RLG00000030408
rosa_multiflora	Rmu_sc0001817.1_g000001 Rmu_sc0003410.1_g000051 Rmu_sc0027805.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090460 Rroxscaffold_4G00327500
rosa_samantha	Rh1AG045700 Rh1AG046400 Rh1BG044900 Rh1CG050600 Rh1DG052900 Rh1DG054900 Rh6DG318500
rosa_wichuraiana	Rw1G004070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	407, 624, 909
AccII	CGCG	2 cut(s)	63, 738
AciI	CCGC	3 cut(s)	61, 81, 736
AclWI	GGATC	1 cut(s)	1021
AcsI	RAATTY	2 cut(s)	546, 1042
AcuI	CTGAAG	1 cut(s)	801
AfaI	GTAC	2 cut(s)	304, 458
AfiI	CCNNNNNNNGG	1 cut(s)	508
AgeI	ACCGGT	1 cut(s)	1271
AgsI	TTSAA	7 cut(s)	56, 177, 527, 845, 955, 1036, 1123
AluBI	AGCT	9 cut(s)	101, 209, 442, 467, 794, 982, 1237, 1294, 1320
AluI	AGCT	9 cut(s)	101, 209, 442, 467, 794, 982, 1237, 1294, 1320
Alw21I	GWGCWC	1 cut(s)	1218
Alw26I	GTCTC	1 cut(s)	1147
AlwI	GGATC	1 cut(s)	1021
AoxI	GGCC	1 cut(s)	499
ApeKI	GCWGC	3 cut(s)	374, 1180, 1234
ApoI	RAATTY	2 cut(s)	546, 1042
ArsI	GACNNNNNNTTYG	6 cut(s)	300, 332, 353, 385, 876, 908
AsiGI	ACCGGT	1 cut(s)	1271
Asp700I	GAANNNNTTC	1 cut(s)	1194
AspLEI	GCGC	3 cut(s)	65, 118, 988
AspS9I	GGNCC	1 cut(s)	316
AvaII	GGWCC	1 cut(s)	316
BaeI	ACNNNNGTAYC	2 cut(s)	1258, 1291
Bbv12I	GWGCWC	1 cut(s)	1218
BbvCI	CCTCAGC	1 cut(s)	959
BbvI	GCAGC	3 cut(s)	361, 1167, 1246
BccI	CCATC	4 cut(s)	390, 569, 646, 997
BceAI	ACGGC	1 cut(s)	514
BclI	TGATCA	2 cut(s)	700, 1329
BcoDI	GTCTC	1 cut(s)	1147
BfmI	CTRYAG	3 cut(s)	201, 808, 1232
BfoI	RGCGCY	1 cut(s)	989
BglII	AGATCT	1 cut(s)	804
BisI	GCNGC	4 cut(s)	81, 375, 1181, 1235
BlsI	GCNGC	4 cut(s)	82, 376, 1182, 1236
Bme18I	GGWCC	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	316
BmrI	ACTGGG	1 cut(s)	546
BmsI	GCATC	2 cut(s)	160, 597
BmuI	ACTGGG	1 cut(s)	546
Bpu10I	CCTNAGC	1 cut(s)	959
BpuEI	CTTGAG	2 cut(s)	845, 1129
Bsa29I	ATCGAT	1 cut(s)	641
BsaBI	GATNNNNATC	2 cut(s)	483, 705
BsaJI	CCNNGG	1 cut(s)	471
BsaWI	WCCGGW	1 cut(s)	1271
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	508
Bse118I	RCCGGY	1 cut(s)	1271
Bse1I	ACTGG	5 cut(s)	143, 347, 460, 541, 917
Bse3DI	GCAATG	1 cut(s)	1005
Bse8I	GATNNNNATC	2 cut(s)	483, 705
BseCI	ATCGAT	1 cut(s)	641
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	2 cut(s)	231, 481
BseJI	GATNNNNATC	2 cut(s)	483, 705
BseLI	CCNNNNNNNGG	1 cut(s)	508
BseMI	GCAATG	1 cut(s)	1005
BseMII	CTCAG	5 cut(s)	377, 444, 582, 861, 973
BseNI	ACTGG	5 cut(s)	143, 347, 460, 541, 917
BseXI	GCAGC	3 cut(s)	361, 1167, 1246
Bsh1236I	CGCG	2 cut(s)	63, 738
BshFI	GGCC	1 cut(s)	501
BshTI	ACCGGT	1 cut(s)	1271
BshVI	ATCGAT	1 cut(s)	641
BsiHKAI	GWGCWC	1 cut(s)	1218
BsiSI	CCGG	1 cut(s)	1272
BslFI	GGGAC	2 cut(s)	248, 655
BslI	CCNNNNNNNGG	1 cut(s)	508
BsmAI	GTCTC	1 cut(s)	1147
BsmFI	GGGAC	2 cut(s)	248, 655
BsnI	GGCC	1 cut(s)	501
Bsp1286I	GDGCHC	1 cut(s)	1218
Bsp143I	GATC	6 cut(s)	47, 478, 700, 804, 1013, 1329
BspACI	CCGC	3 cut(s)	61, 81, 736
BspANI	GGCC	1 cut(s)	501
BspCNI	CTCAG	5 cut(s)	378, 445, 581, 862, 972
BspDI	ATCGAT	1 cut(s)	641
BspFNI	CGCG	2 cut(s)	63, 738
BspHI	TCATGA	1 cut(s)	975
BspMAI	CTGCAG	1 cut(s)	1236
BspPI	GGATC	1 cut(s)	1021
BsrDI	GCAATG	1 cut(s)	1005
BsrFI	RCCGGY	1 cut(s)	1271
BsrI	ACTGG	5 cut(s)	143, 347, 460, 541, 917
BssAI	RCCGGY	1 cut(s)	1271
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	6 cut(s)	47, 478, 700, 804, 1013, 1329
BssNAI	GTATAC	1 cut(s)	910
BssT1I	CCWWGG	1 cut(s)	471
Bst1107I	GTATAC	1 cut(s)	910
Bst4CI	ACNGT	3 cut(s)	405, 763, 1023
Bst6I	CTCTTC	1 cut(s)	680
BstC8I	GCNNGC	3 cut(s)	379, 796, 984
BstDEI	CTNAG	7 cut(s)	164, 326, 386, 453, 568, 870, 959
BstF5I	GGATG	2 cut(s)	231, 481
BstFNI	CGCG	2 cut(s)	63, 738
BstH2I	RGCGCY	1 cut(s)	989
BstHHI	GCGC	3 cut(s)	65, 118, 988
BstKTI	GATC	6 cut(s)	50, 481, 703, 807, 1016, 1332
BstMAI	GTCTC	1 cut(s)	1147
BstMBI	GATC	6 cut(s)	47, 478, 700, 804, 1013, 1329
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 735
BstNSI	RCATGY	1 cut(s)	1088
BstSFI	CTRYAG	3 cut(s)	201, 808, 1232
BstUI	CGCG	2 cut(s)	63, 738
BstV1I	GCAGC	3 cut(s)	361, 1167, 1246
BstX2I	RGATCY	2 cut(s)	804, 1013
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	2 cut(s)	804, 1013
BstZ17I	GTATAC	1 cut(s)	910
Bsu15I	ATCGAT	1 cut(s)	641
BsuRI	GGCC	1 cut(s)	501
BsuTUI	ATCGAT	1 cut(s)	641
BtgZI	GCGATG	2 cut(s)	77, 753
BtsCI	GGATG	2 cut(s)	231, 481
BtsI	GCAGTG	1 cut(s)	1057
BtsIMutI	CAGTG	1 cut(s)	1057
Cac8I	GCNNGC	3 cut(s)	379, 796, 984
CciI	TCATGA	1 cut(s)	975
CfoI	GCGC	3 cut(s)	65, 118, 988
Cfr10I	RCCGGY	1 cut(s)	1271
Cfr13I	GGNCC	1 cut(s)	316
ClaI	ATCGAT	1 cut(s)	641
Csp6I	GTAC	2 cut(s)	303, 457
CspAI	ACCGGT	1 cut(s)	1271
CviAII	CATG	5 cut(s)	260, 799, 941, 976, 1085
CviQI	GTAC	2 cut(s)	303, 457
DdeI	CTNAG	7 cut(s)	164, 326, 386, 453, 568, 870, 959
DpnI	GATC	6 cut(s)	49, 480, 702, 806, 1015, 1331
DpnII	GATC	6 cut(s)	47, 478, 700, 804, 1013, 1329
Eam1104I	CTCTTC	1 cut(s)	680
EarI	CTCTTC	1 cut(s)	680
Eco130I	CCWWGG	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	801
EcoT14I	CCWWGG	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	5 cut(s)	263, 802, 944, 979, 1088
FalI	AAGNNNNNCTT	4 cut(s)	659, 691, 1118, 1150
FaqI	GGGAC	2 cut(s)	248, 655
FatI	CATG	5 cut(s)	259, 798, 940, 975, 1084
FbaI	TGATCA	2 cut(s)	700, 1329
FblI	GTMKAC	3 cut(s)	407, 624, 909
Fnu4HI	GCNGC	4 cut(s)	81, 375, 1181, 1235
FokI	GGATG	2 cut(s)	238, 488
Fsp4HI	GCNGC	4 cut(s)	81, 375, 1181, 1235
GlaI	GCGC	3 cut(s)	64, 117, 987
GluI	GCNGC	4 cut(s)	81, 375, 1181, 1235
HaeII	RGCGCY	1 cut(s)	989
HaeIII	GGCC	1 cut(s)	501
HapII	CCGG	1 cut(s)	1272
HhaI	GCGC	3 cut(s)	65, 118, 988
Hin1II	CATG	5 cut(s)	263, 802, 944, 979, 1088
Hin6I	GCGC	3 cut(s)	63, 116, 986
HinP1I	GCGC	3 cut(s)	63, 116, 986
HincII	GTYRAC	1 cut(s)	1093
HindII	GTYRAC	1 cut(s)	1093
HindIII	AAGCTT	1 cut(s)	1318
HinfI	GANTC	7 cut(s)	346, 388, 866, 891, 1027, 1195, 1250
HpaII	CCGG	1 cut(s)	1272
Hpy166II	GTNNAC	4 cut(s)	408, 625, 910, 1093
Hpy188III	TCNNGA	4 cut(s)	686, 851, 976, 1327
Hpy8I	GTNNAC	4 cut(s)	408, 625, 910, 1093
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	4 cut(s)	459, 512, 826, 1146
HpyCH4III	ACNGT	3 cut(s)	405, 763, 1023
HpyCH4V	TGCA	7 cut(s)	588, 606, 633, 897, 998, 1183, 1234
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 735
HpyF3I	CTNAG	7 cut(s)	164, 326, 386, 453, 568, 870, 959
Hsp92II	CATG	5 cut(s)	263, 802, 944, 979, 1088
HspAI	GCGC	3 cut(s)	63, 116, 986
Ksp22I	TGATCA	2 cut(s)	700, 1329
Kzo9I	GATC	6 cut(s)	47, 478, 700, 804, 1013, 1329
LmnI	GCTCC	2 cut(s)	206, 1081
Lsp1109I	GCAGC	3 cut(s)	361, 1167, 1246
LweI	GCATC	2 cut(s)	160, 597
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	6 cut(s)	49, 480, 702, 806, 1015, 1331
MboI	GATC	6 cut(s)	47, 478, 700, 804, 1013, 1329
MboII	GAAGA	5 cut(s)	240, 473, 667, 701, 794
MfeI	CAATTG	1 cut(s)	1167
MflI	RGATCY	2 cut(s)	804, 1013
MhlI	GDGCHC	1 cut(s)	1218
MlyI	GAGTC	4 cut(s)	397, 875, 900, 1036
MmeI	TCCRAC	1 cut(s)	809
MnlI	CCTC	8 cut(s)	76, 129, 267, 514, 683, 689, 968, 1000
MroXI	GAANNNNTTC	1 cut(s)	1194
MseI	TTAA	3 cut(s)	219, 422, 611
MslI	CAYNNNNRTG	1 cut(s)	137
MspI	CCGG	1 cut(s)	1272
MunI	CAATTG	1 cut(s)	1167
MvnI	CGCG	2 cut(s)	63, 738
MwoI	GCNNNNNNNGC	2 cut(s)	206, 735
NdeII	GATC	6 cut(s)	47, 478, 700, 804, 1013, 1329
NlaIII	CATG	5 cut(s)	263, 802, 944, 979, 1088
NmeAIII	GCCGAG	1 cut(s)	122
NmuCI	GTSAC	1 cut(s)	389
NspI	RCATGY	1 cut(s)	1088
PagI	TCATGA	1 cut(s)	975
PdmI	GAANNNNTTC	1 cut(s)	1194
PfeI	GAWTC	3 cut(s)	346, 1195, 1250
PinAI	ACCGGT	1 cut(s)	1271
PkrI	GCNGC	4 cut(s)	82, 376, 1182, 1236
PleI	GAGTC	4 cut(s)	396, 874, 899, 1035
PpsI	GAGTC	4 cut(s)	396, 874, 899, 1035
PspPI	GGNCC	1 cut(s)	316
PstI	CTGCAG	1 cut(s)	1236
PsuI	RGATCY	2 cut(s)	804, 1013
RsaI	GTAC	2 cut(s)	304, 458
RsaNI	GTAC	2 cut(s)	303, 457
RseI	CAYNNNNRTG	1 cut(s)	137
SaqAI	TTAA	3 cut(s)	219, 422, 611
SatI	GCNGC	4 cut(s)	81, 375, 1181, 1235
Sau3AI	GATC	6 cut(s)	47, 478, 700, 804, 1013, 1329
Sau96I	GGNCC	1 cut(s)	316
SchI	GAGTC	4 cut(s)	397, 875, 900, 1036
SduI	GDGCHC	1 cut(s)	1218
SfaNI	GCATC	2 cut(s)	160, 597
SfcI	CTRYAG	3 cut(s)	201, 808, 1232
SinI	GGWCC	1 cut(s)	316
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	2 cut(s)	860, 1144
SmoI	CTYRAG	2 cut(s)	860, 1144
SsiI	CCGC	3 cut(s)	61, 81, 736
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	3 cut(s)	405, 763, 1023
TaqI	TCGA	3 cut(s)	109, 444, 641
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	3 cut(s)	346, 1195, 1250
Tru1I	TTAA	3 cut(s)	219, 422, 611
Tru9I	TTAA	3 cut(s)	219, 422, 611
TscAI	CASTG	1 cut(s)	1064
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	3 cut(s)	374, 1180, 1234
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	7 cut(s)	242, 473, 705, 948, 964, 992, 1203
TspRI	CASTG	1 cut(s)	1064
VpaK11BI	GGWCC	1 cut(s)	316
XapI	RAATTY	2 cut(s)	546, 1042
XceI	RCATGY	1 cut(s)	1088
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1000
XmiI	GTMKAC	3 cut(s)	407, 624, 909
XmnI	GAANNNNTTC	1 cut(s)	1194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.