Rh6DG318500

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0015192
Physical Location & Seq
Forward (+)
52075242 .. 52076123
882 bp
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UTR
Exon/CDS
Intron
Rh6DG318500.1

Sequence Viewer

Length: 423 bp
ATGTTTGATGGAAGAGAAGAAGATGAAACAATAACAACCCAGAACCTGAATCTGGAGATTCCGGATATCAACATCGACATCCTGAAACGGTTGCCGGCGAAGTCTCTGGTTCAATTCAGGTGCGTGTGCAAGCCATGGGGCTCTCTGCTCACAGACCCCAACTATTCATCAAATCTCATCTGGAGCGAAATCGATCGTTATTCCAATCTAATCTCAAAACCAACACTCGGCTCAGATGAGGACACACCTCCTTATTTCGATAAGCATATTTTTCAGGCTACTGAGGTGAATGGTGGGCTGTGTTGGCTGGTTGAGGATCATCAAACCGCTAGGTGTGTCATTCTGAGGTTTGATTTAGCCAAGTATTGGTCCGCTGCCAATGGTAGCATCGGATCCCTGAACCTGCTTCCTATTTCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

140

Amino Acids

15.86

Weight (kDa)

4.68

Isoelectric Point (pI)

36.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 23 - 54 3.3e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 411
AccB7I CCANNNNNTGG 1 cut(s) 366
AccIII TCCGGA 1 cut(s) 61
AciI CCGC 2 cut(s) 327, 372
AclWI GGATC 3 cut(s) 324, 387, 400
AfiI CCNNNNNNNGG 3 cut(s) 52, 227, 366
AgsI TTSAA 1 cut(s) 113
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 3 cut(s) 324, 387, 400
AlwNI CAGNNNCTG 1 cut(s) 46
Aor13HI TCCGGA 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 374
AspS9I GGNCC 1 cut(s) 369
AsuHPI GGTGA 1 cut(s) 298
AvaII GGWCC 1 cut(s) 369
BamHI GGATCC 1 cut(s) 392
BanII GRGCYC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 361
BccI CCATC 1 cut(s) 2
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 1 cut(s) 330
BfuAI ACCTGC 1 cut(s) 411
BisI GCNGC 1 cut(s) 375
BlsI GCNGC 1 cut(s) 376
Bme18I GGWCC 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 369
BmiI GGNNCC 1 cut(s) 394
BmsI GCATC 1 cut(s) 396
BpmI CTGGAG 2 cut(s) 74, 202
Bsa29I ATCGAT 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 134
BsaWI WCCGGW 1 cut(s) 61
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 227, 366
Bse118I RCCGGY 1 cut(s) 94
BseAI TCCGGA 1 cut(s) 61
BseCI ATCGAT 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 78
BseLI CCNNNNNNNGG 3 cut(s) 52, 227, 366
BseMII CTCAG 3 cut(s) 246, 273, 335
BseXI GCAGC 1 cut(s) 361
Bsh1285I CGRYCG 1 cut(s) 196
BshVI ATCGAT 1 cut(s) 192
BsiEI CGRYCG 1 cut(s) 196
BsiSI CCGG 2 cut(s) 62, 95
BslI CCNNNNNNNGG 3 cut(s) 52, 227, 366
BsmAI GTCTC 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 143
Bsp13I TCCGGA 1 cut(s) 61
Bsp143I GATC 3 cut(s) 193, 316, 392
Bsp19I CCATGG 1 cut(s) 134
BspACI CCGC 2 cut(s) 327, 372
BspCNI CTCAG 3 cut(s) 245, 274, 336
BspDI ATCGAT 1 cut(s) 192
BspEI TCCGGA 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 394
BspMI ACCTGC 1 cut(s) 411
BspPI GGATC 3 cut(s) 324, 387, 400
BsrFI RCCGGY 1 cut(s) 94
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 134
BssMI GATC 3 cut(s) 193, 316, 392
BssT1I CCWWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 7
BstC8I GCNNGC 2 cut(s) 96, 131
BstDEI CTNAG 3 cut(s) 232, 282, 344
BstDSI CCRYGG 1 cut(s) 134
BstF5I GGATG 1 cut(s) 78
BstKTI GATC 3 cut(s) 196, 319, 395
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 3 cut(s) 193, 316, 392
BstMCI CGRYCG 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 304
BstV1I GCAGC 1 cut(s) 361
BstX2I RGATCY 1 cut(s) 392
BstYI RGATCY 1 cut(s) 392
Bsu15I ATCGAT 1 cut(s) 192
BsuTUI ATCGAT 1 cut(s) 192
BtgI CCRYGG 1 cut(s) 134
BtsCI GGATG 1 cut(s) 78
BveI ACCTGC 1 cut(s) 411
Cac8I GCNNGC 2 cut(s) 96, 131
CaiI CAGNNNCTG 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 369
ClaI ATCGAT 1 cut(s) 192
CviAII CATG 1 cut(s) 135
CviJI RGCY 7 cut(s) 133, 141, 231, 278, 298, 307, 359
CviKI_1 RGCY 7 cut(s) 133, 141, 231, 278, 298, 307, 359
DdeI CTNAG 3 cut(s) 232, 282, 344
DpnI GATC 3 cut(s) 195, 318, 394
DpnII GATC 3 cut(s) 193, 316, 392
Eam1104I CTCTTC 1 cut(s) 7
EarI CTCTTC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 143
Eco32I GATATC 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 369
EcoRV GATATC 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 134
EcoT38I GRGCYC 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 134
FaeI CATG 1 cut(s) 138
FaiI YATR 2 cut(s) 136, 267
FatI CATG 1 cut(s) 134
Fnu4HI GCNGC 1 cut(s) 375
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 375
FspBI CTAG 1 cut(s) 330
GluI GCNGC 1 cut(s) 375
GsuI CTGGAG 2 cut(s) 74, 202
HapII CCGG 2 cut(s) 62, 95
Hin1II CATG 1 cut(s) 138
HinfI GANTC 2 cut(s) 49, 58
HpaII CCGG 2 cut(s) 62, 95
HphI GGTGA 1 cut(s) 298
Hpy188I TCNGA 3 cut(s) 235, 345, 392
Hpy188III TCNNGA 4 cut(s) 53, 62, 82, 181
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 1 cut(s) 304
HpyF3I CTNAG 3 cut(s) 232, 282, 344
Hsp92II CATG 1 cut(s) 138
Kpn2I TCCGGA 1 cut(s) 61
KroI GCCGGC 1 cut(s) 94
KroNI GCCGGC 1 cut(s) 96
Kzo9I GATC 3 cut(s) 193, 316, 392
LmnI GCTCC 1 cut(s) 183
Lsp1109I GCAGC 1 cut(s) 361
LweI GCATC 1 cut(s) 396
MaeI CTAG 1 cut(s) 330
MalI GATC 3 cut(s) 195, 318, 394
MboI GATC 3 cut(s) 193, 316, 392
MboII GAAGA 3 cut(s) 24, 29, 32
MfeI CAATTG 1 cut(s) 418
MflI RGATCY 1 cut(s) 392
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 2 cut(s) 113, 418
MnlI CCTC 5 cut(s) 232, 258, 277, 307, 339
MroI TCCGGA 1 cut(s) 61
MroNI GCCGGC 1 cut(s) 94
MspA1I CMGCKG 1 cut(s) 374
MspI CCGG 2 cut(s) 62, 95
MunI CAATTG 1 cut(s) 418
MwoI GCNNNNNNNGC 1 cut(s) 304
NaeI GCCGGC 1 cut(s) 96
NcoI CCATGG 1 cut(s) 134
NdeII GATC 3 cut(s) 193, 316, 392
NgoMIV GCCGGC 1 cut(s) 94
NlaIII CATG 1 cut(s) 138
NlaIV GGNNCC 1 cut(s) 394
NmeAIII GCCGAG 1 cut(s) 207
PdiI GCCGGC 1 cut(s) 96
PfeI GAWTC 2 cut(s) 49, 58
PflMI CCANNNNNTGG 1 cut(s) 366
PkrI GCNGC 1 cut(s) 376
Ple19I CGATCG 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 394
PspPI GGNCC 1 cut(s) 369
PstNI CAGNNNCTG 1 cut(s) 46
PsuI RGATCY 1 cut(s) 392
PvuI CGATCG 1 cut(s) 196
SatI GCNGC 1 cut(s) 375
Sau3AI GATC 3 cut(s) 193, 316, 392
Sau96I GGNCC 1 cut(s) 369
SduI GDGCHC 1 cut(s) 143
SetI ASST 7 cut(s) 48, 122, 250, 288, 335, 350, 405
SfaNI GCATC 1 cut(s) 396
SinI GGWCC 1 cut(s) 369
Sse9I AATT 2 cut(s) 113, 418
SsiI CCGC 2 cut(s) 327, 372
SspMI CTAG 1 cut(s) 330
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 90
TaqI TCGA 3 cut(s) 75, 192, 258
TasI AATT 2 cut(s) 113, 418
TfiI GAWTC 2 cut(s) 49, 58
TseI GCWGC 1 cut(s) 374
TspDTI ATGAA 2 cut(s) 39, 156
Van91I CCANNNNNTGG 1 cut(s) 366
VpaK11BI GGWCC 1 cut(s) 369
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.