Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001817.1

Orthogroup ID

OG0015192

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1915

Gene Structure 1915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001817.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgcctctacaagaagaagaagatggagatgtatcgaccctaaaccaaacccagaacccgaatcgagtgataaaccaaaacatgtttgatggaagagaagaagatgaaacaataacaacccagaacatgaatctggagattccggaggatatcatcaccgacatcctgaaacggctgccggcgaagtctctggttcgattcaggtgcatgtgcaagccatggggctctctgctcacagatcctgccttcatcaaatctcatctggagcgaaaccgatccctggattgggcctttgaaggattgcctatgcacagcgagaactcggagttgttgttgttgttgaacaccgggattgggattagatggtttcagtggagaagcttgagaattgaagggcctcatcaaaaagcccgtggatcaagtgggccgatggaggcccgctggcccgcagggcttttggccaggcccggccagtcaaaaaaccagcaaaagcccgccttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

167

Amino Acids

19.1

Weight (kDa)

5.95

Isoelectric Point (pI)

58.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33705
rosa_laevigata	RLG00000012397 RLG00000030408
rosa_multiflora	Rmu_sc0001817.1_g000001 Rmu_sc0003410.1_g000051 Rmu_sc0027805.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090460 Rroxscaffold_4G00327500
rosa_samantha	Rh1AG045700 Rh1AG046400 Rh1BG044900 Rh1CG050600 Rh1DG052900 Rh1DG054900 Rh6DG318500
rosa_wichuraiana	Rw1G004070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	142
AciI	CCGC	3 cut(s)	439, 447, 495
AclWI	GGATC	3 cut(s)	233, 270, 424
AcoI	YGGCCR	2 cut(s)	459, 469
AfiI	CCNNNNNNNGG	4 cut(s)	280, 285, 286, 354
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	3 cut(s)	296, 343, 392
AjnI	CCWGG	2 cut(s)	279, 461
AluBI	AGCT	1 cut(s)	381
AluI	AGCT	1 cut(s)	381
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	3 cut(s)	233, 270, 424
AlwNI	CAGNNNCTG	1 cut(s)	242
Aor13HI	TCCGGA	1 cut(s)	142
AoxI	GGCC	8 cut(s)	288, 395, 425, 435, 443, 459, 464, 469
ApeKI	GCWGC	1 cut(s)	175
AspS9I	GGNCC	6 cut(s)	288, 395, 425, 436, 444, 465
AsuC2I	CCSGG	2 cut(s)	349, 468
AsuHPI	GGTGA	1 cut(s)	148
BalI	TGGCCA	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	4 cut(s)	17, 83, 357, 424
BceAI	ACGGC	1 cut(s)	188
BcgI	CGANNNNNNTGC	2 cut(s)	186, 220
BciT130I	CCWGG	2 cut(s)	281, 463
BcnI	CCSGG	2 cut(s)	349, 468
BcoDI	GTCTC	1 cut(s)	192
BglI	GCCNNNNNGGC	1 cut(s)	451
BisI	GCNGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	177
Bme1390I	CCNGG	4 cut(s)	281, 349, 463, 468
BmgT120I	GGNCC	6 cut(s)	288, 395, 425, 436, 444, 465
BmrFI	CCNGG	4 cut(s)	281, 349, 463, 468
BpmI	CTGGAG	2 cut(s)	155, 284
BpuEI	CTTGAG	1 cut(s)	403
BpuMI	CCSGG	2 cut(s)	349, 468
BsaJI	CCNNGG	3 cut(s)	218, 279, 412
BsaWI	WCCGGW	1 cut(s)	142
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bsc4I	CCNNNNNNNGG	4 cut(s)	280, 285, 286, 354
Bse118I	RCCGGY	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	472
BseAI	TCCGGA	1 cut(s)	142
BseBI	CCWGG	2 cut(s)	281, 463
BseDI	CCNNGG	3 cut(s)	218, 279, 412
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	4 cut(s)	280, 285, 286, 354
BseNI	ACTGG	1 cut(s)	472
BseXI	GCAGC	1 cut(s)	162
BshFI	GGCC	8 cut(s)	290, 397, 427, 437, 445, 461, 466, 471
BsiSI	CCGG	4 cut(s)	143, 179, 348, 468
BslI	CCNNNNNNNGG	4 cut(s)	280, 285, 286, 354
BsmAI	GTCTC	1 cut(s)	192
BsnI	GGCC	8 cut(s)	290, 397, 427, 437, 445, 461, 466, 471
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp13I	TCCGGA	1 cut(s)	142
Bsp143I	GATC	3 cut(s)	238, 275, 416
Bsp19I	CCATGG	1 cut(s)	218
BspACI	CCGC	3 cut(s)	439, 447, 495
BspANI	GGCC	8 cut(s)	290, 397, 427, 437, 445, 461, 466, 471
BspEI	TCCGGA	1 cut(s)	142
BspPI	GGATC	3 cut(s)	233, 270, 424
BsrFI	RCCGGY	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	472
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	3 cut(s)	218, 279, 412
BssMI	GATC	3 cut(s)	238, 275, 416
BssT1I	CCWWGG	1 cut(s)	218
Bst2UI	CCWGG	2 cut(s)	281, 463
Bst6I	CTCTTC	1 cut(s)	88
BstC8I	GCNNGC	6 cut(s)	180, 215, 439, 443, 447, 495
BstDSI	CCRYGG	2 cut(s)	218, 412
BstF5I	GGATG	1 cut(s)	162
BstKTI	GATC	3 cut(s)	241, 278, 419
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	3 cut(s)	238, 275, 416
BstMWI	GCNNNNNNNGC	1 cut(s)	451
BstNI	CCWGG	2 cut(s)	281, 463
BstNSI	RCATGY	2 cut(s)	85, 211
BstSCI	CCNGG	4 cut(s)	279, 347, 461, 466
BstV1I	GCAGC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	8 cut(s)	290, 397, 427, 437, 445, 461, 466, 471
BtgI	CCRYGG	2 cut(s)	218, 412
BtsCI	GGATG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	377
Cac8I	GCNNGC	6 cut(s)	180, 215, 439, 443, 447, 495
CaiI	CAGNNNCTG	1 cut(s)	242
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	6 cut(s)	288, 395, 425, 436, 444, 465
CviAII	CATG	4 cut(s)	82, 127, 208, 219
DpnI	GATC	3 cut(s)	240, 277, 418
DpnII	GATC	3 cut(s)	238, 275, 416
EaeI	YGGCCR	2 cut(s)	459, 469
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	227
Eco32I	GATATC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	395
EcoRII	CCWGG	2 cut(s)	279, 461
EcoRV	GATATC	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	218
EcoT38I	GRGCYC	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	4 cut(s)	85, 130, 211, 222
FaiI	YATR	5 cut(s)	83, 128, 209, 220, 308
FalI	AAGNNNNNCTT	1 cut(s)	482
FatI	CATG	4 cut(s)	81, 126, 207, 218
FauI	CCCGC	2 cut(s)	446, 454
Fnu4HI	GCNGC	1 cut(s)	176
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	176
GluI	GCNGC	1 cut(s)	176
GsuI	CTGGAG	2 cut(s)	155, 284
HaeIII	GGCC	8 cut(s)	290, 397, 427, 437, 445, 461, 466, 471
HapII	CCGG	4 cut(s)	143, 179, 348, 468
Hin1II	CATG	4 cut(s)	85, 130, 211, 222
HindIII	AAGCTT	1 cut(s)	379
HinfI	GANTC	4 cut(s)	61, 130, 139, 198
HpaII	CCGG	4 cut(s)	143, 179, 348, 468
HphI	GGTGA	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	4 cut(s)	134, 143, 166, 263
HpyAV	CCTTC	3 cut(s)	256, 290, 386
HpyCH4V	TGCA	3 cut(s)	207, 213, 310
HpyF10VI	GCNNNNNNNGC	1 cut(s)	451
Hsp92II	CATG	4 cut(s)	85, 130, 211, 222
Kpn2I	TCCGGA	1 cut(s)	142
KroI	GCCGGC	1 cut(s)	178
KroNI	GCCGGC	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	238, 275, 416
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	1 cut(s)	162
MalI	GATC	3 cut(s)	240, 277, 418
MboI	GATC	3 cut(s)	238, 275, 416
MboII	GAAGA	6 cut(s)	26, 29, 32, 105, 110, 113
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	227
MlsI	TGGCCA	1 cut(s)	461
MluCI	AATT	1 cut(s)	387
MluNI	TGGCCA	1 cut(s)	461
MnlI	CCTC	4 cut(s)	15, 139, 408, 427
Mox20I	TGGCCA	1 cut(s)	461
MroI	TCCGGA	1 cut(s)	142
MroNI	GCCGGC	1 cut(s)	178
MscI	TGGCCA	1 cut(s)	461
Msp20I	TGGCCA	1 cut(s)	461
MspA1I	CMGCKG	1 cut(s)	441
MspI	CCGG	4 cut(s)	143, 179, 348, 468
MspR9I	CCNGG	4 cut(s)	281, 349, 463, 468
MvaI	CCWGG	2 cut(s)	281, 463
MwoI	GCNNNNNNNGC	1 cut(s)	451
NaeI	GCCGGC	1 cut(s)	180
NciI	CCSGG	2 cut(s)	349, 468
NcoI	CCATGG	1 cut(s)	218
NdeII	GATC	3 cut(s)	238, 275, 416
NgoMIV	GCCGGC	1 cut(s)	178
NlaIII	CATG	4 cut(s)	85, 130, 211, 222
NspI	RCATGY	2 cut(s)	85, 211
PciI	ACATGT	1 cut(s)	81
PdiI	GCCGGC	1 cut(s)	180
PfeI	GAWTC	4 cut(s)	61, 130, 139, 198
PkrI	GCNGC	1 cut(s)	177
PscI	ACATGT	1 cut(s)	81
Psp6I	CCWGG	2 cut(s)	279, 461
PspGI	CCWGG	2 cut(s)	279, 461
PspPI	GGNCC	6 cut(s)	288, 395, 425, 436, 444, 465
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	238
SatI	GCNGC	1 cut(s)	176
Sau3AI	GATC	3 cut(s)	238, 275, 416
Sau96I	GGNCC	6 cut(s)	288, 395, 425, 436, 444, 465
ScrFI	CCNGG	4 cut(s)	281, 349, 463, 468
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	2 cut(s)	206, 383
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
Sse9I	AATT	1 cut(s)	387
SsiI	CCGC	3 cut(s)	439, 447, 495
StyD4I	CCNGG	4 cut(s)	279, 347, 461, 466
StyI	CCWWGG	1 cut(s)	218
TaqI	TCGA	3 cut(s)	35, 64, 196
TasI	AATT	1 cut(s)	387
TfiI	GAWTC	4 cut(s)	61, 130, 139, 198
TscAI	CASTG	1 cut(s)	377
TseI	GCWGC	1 cut(s)	175
TspDTI	ATGAA	3 cut(s)	120, 143, 238
TspRI	CASTG	1 cut(s)	377
XceI	RCATGY	2 cut(s)	85, 211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.