Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003410.1

Orthogroup ID

OG0015192

Physical Location & Seq

Genomic Coordinates Forward (+)

253418 .. 258717

Gene Structure 5300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003410.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

atgggaagcgtggaggttgaacacccgactgggaaaaaaattccttttgagatatttggctcagttgatgggctaatctgcatctctgataaaccttgcacattaacaagtcgtatctacatttgcaatccgtcgataagaaattggcttccaaagtcccccttcctcactcctgacttctctgatgatcgtaatcttctttcatttgggtttagcccagaccgcaatgattacatagttgtcagaactgtgtggggcaaaaggtctgatgaaatgtcagctcgcacggagatctatagtctgaacggcaaatgttggaaggaaattgttgaacttcctgatattcttaaggaatctgtgaactttatcaaatgtggagtctgcaagggaattgtatactggctgataccaaatatatatgaagtccatgttctctgtttgaaccttagcactgcgcttttcatgaagctggagctacccaatgcaatgatggagggtggatctctactgttgagtcgattcaaggaaaatttgtgtctgtttcactgccatacgacagataaggtggagcatgttgttgacatctgggttttggaaaacaactctttcaaaaaggaacacttggcagtctcaaagggaagggagattgttccaattggatgtagagggctaagggacagcaatgttcaaagagtggaatcccatcagattattccggaggataactctccgtggaaatttatttggaacttgcaacttcctctcaaactgaagacattcacatggattgtttgtcatgataaaatcttgacaaatgttcaaagagccaaaaggaatttgaccaatgacaactcttgtcctttatgccatcaagctcctgagactcttgctcacctatttcgagattgccctgctgttcaagtgatatggaattctttcaatattccatcttgtgtggataatacttctcagatgaattggaatgttgagtggaattcggcctcctcttggctcaatgactctatcttgattcggcttcaatacttaccgtcggctgacttgacgctggactctatccagatcggctctaatggtcgtcatcaacggctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

370

Amino Acids

42.39

Weight (kDa)

6.82

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33705
rosa_laevigata	RLG00000012397 RLG00000030408
rosa_multiflora	Rmu_sc0001817.1_g000001 Rmu_sc0003410.1_g000051 Rmu_sc0027805.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090460 Rroxscaffold_4G00327500
rosa_samantha	Rh1AG045700 Rh1AG046400 Rh1BG044900 Rh1CG050600 Rh1DG052900 Rh1DG054900 Rh6DG318500
rosa_wichuraiana	Rw1G004070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	396
AccIII	TCCGGA	1 cut(s)	715
AciI	CCGC	1 cut(s)	223
AclWI	GGATC	1 cut(s)	508
AcsI	RAATTY	6 cut(s)	39, 529, 737, 835, 931, 994
AcuI	CTGAAG	1 cut(s)	791
AfiI	CCNNNNNNNGG	1 cut(s)	1008
AflII	CTTAAG	1 cut(s)	347
AluBI	AGCT	4 cut(s)	281, 469, 475, 875
AluI	AGCT	4 cut(s)	281, 469, 475, 875
Alw26I	GTCTC	2 cut(s)	634, 875
AlwI	GGATC	1 cut(s)	508
Aor13HI	TCCGGA	1 cut(s)	715
AoxI	GGCC	1 cut(s)	999
ApoI	RAATTY	6 cut(s)	39, 529, 737, 835, 931, 994
ArsI	GACNNNNNNTTYG	2 cut(s)	363, 395
Asp700I	GAANNNNTTC	2 cut(s)	776, 935
AspLEI	GCGC	1 cut(s)	457
AsuHPI	GGTGA	1 cut(s)	884
BbsI	GAAGAC	1 cut(s)	779
BccI	CCATC	5 cut(s)	62, 484, 711, 876, 955
BceAI	ACGGC	1 cut(s)	322
BcoDI	GTCTC	2 cut(s)	634, 875
BfmI	CTRYAG	1 cut(s)	295
BfrI	CTTAAG	1 cut(s)	347
BglII	AGATCT	1 cut(s)	291
BmrI	ACTGGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	90
BmuI	ACTGGG	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	779
BplI	GAGNNNNNCTC	2 cut(s)	710, 742
BpmI	CTGGAG	1 cut(s)	491
Bpu10I	CCTNAGC	2 cut(s)	446, 671
BsaBI	GATNNNNATC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	731
BsaWI	WCCGGW	1 cut(s)	715
Bsc4I	CCNNNNNNNGG	1 cut(s)	1008
Bse1I	ACTGG	2 cut(s)	34, 404
Bse3DI	GCAATG	3 cut(s)	232, 492, 688
Bse8I	GATNNNNATC	1 cut(s)	192
BseAI	TCCGGA	1 cut(s)	715
BseDI	CCNNGG	1 cut(s)	731
BseGI	GGATG	1 cut(s)	665
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	1008
BseMI	GCAATG	3 cut(s)	232, 492, 688
BseMII	CTCAG	3 cut(s)	75, 870, 983
BseNI	ACTGG	2 cut(s)	34, 404
BseRI	GAGGAG	1 cut(s)	994
BshFI	GGCC	1 cut(s)	1001
BsiSI	CCGG	1 cut(s)	716
BslFI	GGGAC	2 cut(s)	142, 689
BslI	CCNNNNNNNGG	1 cut(s)	1008
BsmAI	GTCTC	2 cut(s)	634, 875
BsmFI	GGGAC	2 cut(s)	142, 689
BsnI	GGCC	1 cut(s)	1001
Bsp13I	TCCGGA	1 cut(s)	715
Bsp143I	GATC	4 cut(s)	187, 291, 500, 1080
BspACI	CCGC	1 cut(s)	223
BspANI	GGCC	1 cut(s)	1001
BspCNI	CTCAG	3 cut(s)	74, 871, 982
BspEI	TCCGGA	1 cut(s)	715
BspHI	TCATGA	2 cut(s)	462, 796
BspPI	GGATC	1 cut(s)	508
BspTI	CTTAAG	1 cut(s)	347
BsrDI	GCAATG	3 cut(s)	232, 492, 688
BsrI	ACTGG	2 cut(s)	34, 404
BssECI	CCNNGG	1 cut(s)	731
BssMI	GATC	4 cut(s)	187, 291, 500, 1080
BssNAI	GTATAC	1 cut(s)	397
Bst1107I	GTATAC	1 cut(s)	397
Bst4CI	ACNGT	3 cut(s)	250, 510, 1050
BstAFI	CTTAAG	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	5 cut(s)	61, 446, 671, 879, 969
BstDSI	CCRYGG	1 cut(s)	731
BstF5I	GGATG	1 cut(s)	665
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	4 cut(s)	190, 294, 503, 1083
BstMAI	GTCTC	2 cut(s)	634, 875
BstMBI	GATC	4 cut(s)	187, 291, 500, 1080
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	575
BstSFI	CTRYAG	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	779
BstX2I	RGATCY	2 cut(s)	291, 500
BstYI	RGATCY	2 cut(s)	291, 500
BstZ17I	GTATAC	1 cut(s)	397
BsuRI	GGCC	1 cut(s)	1001
BtgI	CCRYGG	1 cut(s)	731
BtsCI	GGATG	1 cut(s)	665
BtsI	GCAGTG	2 cut(s)	450, 544
BtsIMutI	CAGTG	2 cut(s)	450, 544
Cac8I	GCNNGC	1 cut(s)	283
CciI	TCATGA	2 cut(s)	462, 796
CfoI	GCGC	1 cut(s)	457
CseI	GACGC	1 cut(s)	1072
CviAII	CATG	5 cut(s)	428, 463, 572, 783, 797
DdeI	CTNAG	5 cut(s)	61, 446, 671, 879, 969
DpnI	GATC	4 cut(s)	189, 293, 502, 1082
DpnII	GATC	4 cut(s)	187, 291, 500, 1080
Eco57I	CTGAAG	1 cut(s)	791
EcoRI	GAATTC	2 cut(s)	931, 994
FaeI	CATG	5 cut(s)	431, 466, 575, 786, 800
FalI	AAGNNNNNCTT	4 cut(s)	146, 178, 605, 637
FaqI	GGGAC	2 cut(s)	142, 689
FatI	CATG	5 cut(s)	427, 462, 571, 782, 796
FblI	GTMKAC	1 cut(s)	396
FokI	GGATG	1 cut(s)	672
GlaI	GCGC	1 cut(s)	456
GsuI	CTGGAG	1 cut(s)	491
HaeIII	GGCC	1 cut(s)	1001
HapII	CCGG	1 cut(s)	716
HgaI	GACGC	1 cut(s)	1072
HhaI	GCGC	1 cut(s)	457
Hin1II	CATG	5 cut(s)	431, 466, 575, 786, 800
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HinfI	GANTC	9 cut(s)	353, 378, 514, 519, 698, 883, 1019, 1030, 1070
HpaII	CCGG	1 cut(s)	716
HphI	GGTGA	1 cut(s)	884
Hpy166II	GTNNAC	3 cut(s)	361, 397, 580
Hpy188I	TCNGA	7 cut(s)	88, 184, 245, 268, 303, 708, 972
Hpy8I	GTNNAC	3 cut(s)	361, 397, 580
Hpy99I	CGWCG	2 cut(s)	136, 1054
HpyAV	CCTTC	3 cut(s)	172, 313, 633
HpyCH4III	ACNGT	3 cut(s)	250, 510, 1050
HpyCH4V	TGCA	6 cut(s)	81, 99, 126, 384, 485, 754
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	5 cut(s)	61, 446, 671, 879, 969
Hsp92II	CATG	5 cut(s)	431, 466, 575, 786, 800
HspAI	GCGC	1 cut(s)	455
Kpn2I	TCCGGA	1 cut(s)	715
Kzo9I	GATC	4 cut(s)	187, 291, 500, 1080
LmnI	GCTCC	3 cut(s)	472, 568, 880
LweI	GCATC	1 cut(s)	90
MalI	GATC	4 cut(s)	189, 293, 502, 1082
MboI	GATC	4 cut(s)	187, 291, 500, 1080
MboII	GAAGA	2 cut(s)	188, 784
MfeI	CAATTG	1 cut(s)	654
MflI	RGATCY	2 cut(s)	291, 500
MlyI	GAGTC	5 cut(s)	387, 523, 877, 1013, 1064
MmeI	TCCRAC	1 cut(s)	296
MnlI	CCTC	8 cut(s)	7, 176, 487, 659, 712, 771, 1012, 1015
MroI	TCCGGA	1 cut(s)	715
MroXI	GAANNNNTTC	2 cut(s)	776, 935
MseI	TTAA	2 cut(s)	104, 348
MslI	CAYNNNNRTG	1 cut(s)	781
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	1 cut(s)	716
MunI	CAATTG	1 cut(s)	654
MwoI	GCNNNNNNNGC	1 cut(s)	222
NdeII	GATC	4 cut(s)	187, 291, 500, 1080
NlaIII	CATG	5 cut(s)	431, 466, 575, 786, 800
NspI	RCATGY	1 cut(s)	575
PagI	TCATGA	2 cut(s)	462, 796
PdmI	GAANNNNTTC	2 cut(s)	776, 935
PfeI	GAWTC	4 cut(s)	353, 519, 698, 1030
PleI	GAGTC	5 cut(s)	386, 522, 877, 1013, 1064
PpsI	GAGTC	5 cut(s)	386, 522, 877, 1013, 1064
PsuI	RGATCY	2 cut(s)	291, 500
RseI	CAYNNNNRTG	1 cut(s)	781
SaqAI	TTAA	2 cut(s)	104, 348
Sau3AI	GATC	4 cut(s)	187, 291, 500, 1080
SchI	GAGTC	5 cut(s)	387, 523, 877, 1013, 1064
SfaNI	GCATC	1 cut(s)	90
SfcI	CTRYAG	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	781
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
SsiI	CCGC	1 cut(s)	223
SspI	AATATT	1 cut(s)	943
TaaI	ACNGT	3 cut(s)	250, 510, 1050
TaqI	TCGA	3 cut(s)	134, 517, 901
TfiI	GAWTC	4 cut(s)	353, 519, 698, 1030
Tru1I	TTAA	2 cut(s)	104, 348
Tru9I	TTAA	2 cut(s)	104, 348
TscAI	CASTG	2 cut(s)	457, 551
TspDTI	ATGAA	6 cut(s)	192, 285, 435, 451, 479, 989
TspGWI	ACGGA	3 cut(s)	120, 302, 720
TspRI	CASTG	2 cut(s)	457, 551
Vha464I	CTTAAG	1 cut(s)	347
XapI	RAATTY	6 cut(s)	39, 529, 737, 835, 931, 994
XceI	RCATGY	1 cut(s)	575
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XmiI	GTMKAC	1 cut(s)	396
XmnI	GAANNNNTTC	2 cut(s)	776, 935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.