Rroxscaffold_2G00090460

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015192
Physical Location & Seq
Reverse (-)
12202219 .. 12209250
7032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00090460.1

Sequence Viewer

Length: 477 bp
ATGGATGATCCAAGGAGGCGTCGGTTCCTCCTTCATAGAACTGATGAGGAAAGAAAAGAAATGGATAAAGGTGGTGAATTATGGAGGCACCGGGGACGAAGGGAGCCGGGAGCTTTGTGCTTGGTCGACAAGATAGCACCAATGATTCCTATTTTCTTTAAGAAAAAGAAGACCCTTATTGGCCTGTTCTTGCACATGTTGGCTGTCAATGCAGAGGAAGATCGTAGATTGAAGGTTTTCAAGAAAGGAGTGACAGACAGAGAAAATTATTCTTCTTCCCGTCATGTCCCTGAAGATATTGTCAGGGATATTCTTAAAAGGCTATTTACCAAATCGCTGGTCCGGTTTCTAAGTGTATCAAAGGACTGGAATCATATAATTTCAGACCCAGGATTTGCTGCCAGCCATCTCAGTCACAATATATTAGTCTACAAATCTTTCCTTGATCTCTTAGCACAAAAAGCTCCAACCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

158

Amino Acids

18.57

Weight (kDa)

10.04

Isoelectric Point (pI)

50.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 97 - 132 5.6e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 87
AccI GTMKAC 2 cut(s) 126, 429
AclWI GGATC 1 cut(s) 2
AcuI CTGAAG 1 cut(s) 312
AcyI GRCGYC 1 cut(s) 19
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 2 cut(s) 232, 241
AjnI CCWGG 1 cut(s) 388
AluBI AGCT 2 cut(s) 113, 464
AluI AGCT 2 cut(s) 113, 464
AlwI GGATC 1 cut(s) 2
AoxI GGCC 1 cut(s) 181
ApeKI GCWGC 1 cut(s) 398
ArsI GACNNNNNNTTYG 4 cut(s) 324, 356, 377, 409
Asp700I GAANNNNTTC 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 340
AsuC2I CCSGG 2 cut(s) 92, 108
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 340
BanI GGYRCC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 176
BbvI GCAGC 1 cut(s) 385
BccI CCATC 1 cut(s) 414
BciT130I CCWGG 1 cut(s) 390
BcnI CCSGG 2 cut(s) 92, 108
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
Bme1390I CCNGG 3 cut(s) 92, 108, 390
Bme18I GGWCC 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 340
BmiI GGNNCC 3 cut(s) 26, 89, 105
BmrFI CCNGG 3 cut(s) 92, 108, 390
BpiI GAAGAC 1 cut(s) 176
BpuMI CCSGG 2 cut(s) 92, 108
BsaHI GRCGYC 1 cut(s) 19
BsaJI CCNNGG 3 cut(s) 11, 91, 388
BsaWI WCCGGW 1 cut(s) 342
Bse1I ACTGG 1 cut(s) 371
BseBI CCWGG 1 cut(s) 390
BseDI CCNNGG 3 cut(s) 11, 91, 388
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 424
BseNI ACTGG 1 cut(s) 371
BseXI GCAGC 1 cut(s) 385
BshFI GGCC 1 cut(s) 183
BshNI GGYRCC 1 cut(s) 87
BsiSI CCGG 3 cut(s) 91, 107, 343
BslFI GGGAC 2 cut(s) 108, 272
BsmFI GGGAC 2 cut(s) 108, 272
BsnI GGCC 1 cut(s) 183
Bsp143I GATC 3 cut(s) 7, 220, 445
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 1 cut(s) 423
BspLI GGNNCC 3 cut(s) 26, 89, 105
BspPI GGATC 1 cut(s) 2
BspT107I GGYRCC 1 cut(s) 87
BsrI ACTGG 1 cut(s) 371
BssECI CCNNGG 3 cut(s) 11, 91, 388
BssMI GATC 3 cut(s) 7, 220, 445
BssNI GRCGYC 1 cut(s) 19
BssT1I CCWWGG 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 390
BstACI GRCGYC 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 3 cut(s) 350, 410, 451
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 10, 223, 448
BstMBI GATC 3 cut(s) 7, 220, 445
BstMWI GCNNNNNNNGC 2 cut(s) 209, 461
BstNI CCWGG 1 cut(s) 390
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 3 cut(s) 90, 106, 388
BstV1I GCAGC 1 cut(s) 385
BstV2I GAAGAC 1 cut(s) 176
BstXI CCANNNNNNTGG 1 cut(s) 337
BsuRI GGCC 1 cut(s) 183
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 403
Cfr13I GGNCC 1 cut(s) 340
CseI GACGC 1 cut(s) 8
CviAII CATG 2 cut(s) 196, 284
CviJI RGCY 7 cut(s) 106, 113, 183, 203, 322, 405, 464
CviKI_1 RGCY 7 cut(s) 106, 113, 183, 203, 322, 405, 464
DdeI CTNAG 3 cut(s) 350, 410, 451
DpnI GATC 3 cut(s) 9, 222, 447
DpnII GATC 3 cut(s) 7, 220, 445
Eco130I CCWWGG 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 312
EcoRII CCWGG 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 2 cut(s) 199, 287
FaiI YATR 7 cut(s) 36, 82, 197, 285, 375, 377, 422
FaqI GGGAC 2 cut(s) 108, 272
FatI CATG 2 cut(s) 195, 283
FblI GTMKAC 2 cut(s) 126, 429
Fnu4HI GCNGC 1 cut(s) 399
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 399
GluI GCNGC 1 cut(s) 399
HaeIII GGCC 1 cut(s) 183
HapII CCGG 3 cut(s) 91, 107, 343
HgaI GACGC 1 cut(s) 8
Hin1I GRCGYC 1 cut(s) 19
Hin1II CATG 2 cut(s) 199, 287
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 2 cut(s) 145, 370
HpaII CCGG 3 cut(s) 91, 107, 343
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 2 cut(s) 127, 430
Hpy188I TCNGA 2 cut(s) 385, 476
Hpy188III TCNNGA 1 cut(s) 241
Hpy8I GTNNAC 2 cut(s) 127, 430
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 3 cut(s) 41, 93, 226
HpyCH4V TGCA 2 cut(s) 193, 212
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 461
HpyF3I CTNAG 3 cut(s) 350, 410, 451
Hsp92I GRCGYC 1 cut(s) 19
Hsp92II CATG 2 cut(s) 199, 287
Kzo9I GATC 3 cut(s) 7, 220, 445
LmnI GCTCC 3 cut(s) 103, 110, 469
Lsp1109I GCAGC 1 cut(s) 385
MaeIII GTNAC 2 cut(s) 250, 413
MalI GATC 3 cut(s) 9, 222, 447
MboI GATC 3 cut(s) 7, 220, 445
MboII GAAGA 5 cut(s) 181, 230, 264, 267, 305
MluCI AATT 3 cut(s) 77, 265, 378
MnlI CCTC 5 cut(s) 9, 38, 40, 78, 208
MroXI GAANNNNTTC 1 cut(s) 236
MseI TTAA 2 cut(s) 159, 315
MspI CCGG 3 cut(s) 91, 107, 343
MspR9I CCNGG 3 cut(s) 92, 108, 390
MvaI CCWGG 1 cut(s) 390
MwoI GCNNNNNNNGC 2 cut(s) 209, 461
NciI CCSGG 2 cut(s) 92, 108
NdeII GATC 3 cut(s) 7, 220, 445
NlaIII CATG 2 cut(s) 199, 287
NlaIV GGNNCC 3 cut(s) 26, 89, 105
NmuCI GTSAC 2 cut(s) 250, 413
NspI RCATGY 1 cut(s) 199
PciI ACATGT 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 236
PfeI GAWTC 2 cut(s) 145, 370
PkrI GCNGC 1 cut(s) 400
PscI ACATGT 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 3 cut(s) 26, 89, 105
PspPI GGNCC 1 cut(s) 340
SalI GTCGAC 1 cut(s) 125
SaqAI TTAA 2 cut(s) 159, 315
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 3 cut(s) 7, 220, 445
Sau96I GGNCC 1 cut(s) 340
ScrFI CCNGG 3 cut(s) 92, 108, 390
SetI ASST 5 cut(s) 73, 115, 237, 466, 473
SinI GGWCC 1 cut(s) 340
Sse9I AATT 3 cut(s) 77, 265, 378
StyD4I CCNGG 3 cut(s) 90, 106, 388
StyI CCWWGG 1 cut(s) 11
TaqI TCGA 1 cut(s) 126
TasI AATT 3 cut(s) 77, 265, 378
TfiI GAWTC 2 cut(s) 145, 370
Tru1I TTAA 2 cut(s) 159, 315
Tru9I TTAA 2 cut(s) 159, 315
TseFI GTSAC 2 cut(s) 250, 413
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 2 cut(s) 250, 413
TspDTI ATGAA 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 340
XceI RCATGY 1 cut(s) 199
XmiI GTMKAC 2 cut(s) 126, 429
XmnI GAANNNNTTC 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.