Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027805.1

Orthogroup ID

OG0015192

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 729

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027805.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

gtgctgcttccaaagtcccccttcctcactcctgacttctctgatgatcataatcttctttcatttgggtctagcccagaccgcgatgattacatagttgtcagaactgtgtggggcaaaaggtctgatgaaatgtcagctcgcacggagatgtcagctcgcacggagatgtcagctcgcacggagatctatagtctgagcggaaaatgttggaaggaaattgttgaacttcctgatattcttaaggagtctgtgaactttatcaaatgtggagtctgcaagggaattgtatactggctgataccaaatatatatgaagtccgtgttctctgtttgaacctcagcactacgcttttcatgaagctggagctacccaatgcaatgatggagggtggatctctactgttgagtcgattcaaggaaaatttgtgtctgtttcactgccatacgacagataaggtggagcatgttgttgacatctgggttttggaaaacaactctttcaaaaaggaacacttggcagtctcaaagggaagggagattgttccaattgggtttgggctgcataatgaactgattcttgtgaaacttgatgaacacaatgagtatagactgcagctatatgatttggaatcaaatgagatgactgacaccggtatcataatggctgaaaagctgtttgctgatacttatactgaaagcttactcctgatcaacaatcctaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

242

Amino Acids

27.75

Weight (kDa)

5.13

Isoelectric Point (pI)

33.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33705
rosa_laevigata	RLG00000012397 RLG00000030408
rosa_multiflora	Rmu_sc0001817.1_g000001 Rmu_sc0003410.1_g000051 Rmu_sc0027805.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090460 Rroxscaffold_4G00327500
rosa_samantha	Rh1AG045700 Rh1AG046400 Rh1BG044900 Rh1CG050600 Rh1DG052900 Rh1DG054900 Rh6DG318500
rosa_wichuraiana	Rw1G004070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	201
AccI	GTMKAC	1 cut(s)	291
AccII	CGCG	1 cut(s)	84
AciI	CCGC	2 cut(s)	82, 201
AclWI	GGATC	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	424
AflII	CTTAAG	1 cut(s)	242
AgeI	ACCGGT	1 cut(s)	653
AgsI	TTSAA	4 cut(s)	227, 337, 418, 505
AluBI	AGCT	8 cut(s)	140, 158, 176, 364, 370, 619, 676, 702
AluI	AGCT	8 cut(s)	140, 158, 176, 364, 370, 619, 676, 702
Alw26I	GTCTC	1 cut(s)	529
AlwI	GGATC	1 cut(s)	403
ApeKI	GCWGC	3 cut(s)	4, 562, 616
ApoI	RAATTY	1 cut(s)	424
ArsI	GACNNNNNNTTYG	2 cut(s)	258, 290
AsiGI	ACCGGT	1 cut(s)	653
Asp700I	GAANNNNTTC	1 cut(s)	576
BaeI	ACNNNNGTAYC	2 cut(s)	640, 673
BbvCI	CCTCAGC	1 cut(s)	341
BbvI	GCAGC	2 cut(s)	549, 628
BccI	CCATC	1 cut(s)	379
BclI	TGATCA	2 cut(s)	46, 711
BcoDI	GTCTC	1 cut(s)	529
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	2 cut(s)	190, 614
BfrI	CTTAAG	1 cut(s)	242
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	3 cut(s)	5, 563, 617
BlsI	GCNGC	3 cut(s)	6, 564, 618
BpmI	CTGGAG	1 cut(s)	386
Bpu10I	CCTNAGC	1 cut(s)	341
BsaBI	GATNNNNATC	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	653
Bse118I	RCCGGY	1 cut(s)	653
Bse1I	ACTGG	1 cut(s)	299
Bse3DI	GCAATG	1 cut(s)	387
Bse8I	GATNNNNATC	1 cut(s)	51
BseJI	GATNNNNATC	1 cut(s)	51
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	2 cut(s)	188, 355
BseNI	ACTGG	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	549, 628
Bsh1236I	CGCG	1 cut(s)	84
BshTI	ACCGGT	1 cut(s)	653
BsiSI	CCGG	1 cut(s)	654
BsmAI	GTCTC	1 cut(s)	529
Bsp143I	GATC	4 cut(s)	46, 186, 395, 711
BspACI	CCGC	2 cut(s)	82, 201
BspCNI	CTCAG	2 cut(s)	189, 354
BspFNI	CGCG	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	357
BspMAI	CTGCAG	1 cut(s)	618
BspPI	GGATC	1 cut(s)	403
BspTI	CTTAAG	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	653
BsrI	ACTGG	1 cut(s)	299
BssAI	RCCGGY	1 cut(s)	653
BssMI	GATC	4 cut(s)	46, 186, 395, 711
BssNAI	GTATAC	1 cut(s)	292
Bst1107I	GTATAC	1 cut(s)	292
Bst4CI	ACNGT	2 cut(s)	109, 405
BstAFI	CTTAAG	1 cut(s)	242
BstC8I	GCNNGC	3 cut(s)	142, 160, 178
BstDEI	CTNAG	2 cut(s)	197, 341
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	4 cut(s)	49, 189, 398, 714
BstMAI	GTCTC	1 cut(s)	529
BstMBI	GATC	4 cut(s)	46, 186, 395, 711
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstNSI	RCATGY	1 cut(s)	470
BstSFI	CTRYAG	2 cut(s)	190, 614
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	549, 628
BstX2I	RGATCY	2 cut(s)	186, 395
BstYI	RGATCY	2 cut(s)	186, 395
BstZ17I	GTATAC	1 cut(s)	292
BtgZI	GCGATG	1 cut(s)	99
BtsI	GCAGTG	1 cut(s)	439
BtsIMutI	CAGTG	1 cut(s)	439
Cac8I	GCNNGC	3 cut(s)	142, 160, 178
CciI	TCATGA	1 cut(s)	357
Cfr10I	RCCGGY	1 cut(s)	653
CspAI	ACCGGT	1 cut(s)	653
CviAII	CATG	2 cut(s)	358, 467
DdeI	CTNAG	2 cut(s)	197, 341
DpnI	GATC	4 cut(s)	48, 188, 397, 713
DpnII	GATC	4 cut(s)	46, 186, 395, 711
FaeI	CATG	2 cut(s)	361, 470
FalI	AAGNNNNNCTT	3 cut(s)	37, 500, 532
FatI	CATG	2 cut(s)	357, 466
FbaI	TGATCA	2 cut(s)	46, 711
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	3 cut(s)	5, 563, 617
Fsp4HI	GCNGC	3 cut(s)	5, 563, 617
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	3 cut(s)	5, 563, 617
GsuI	CTGGAG	1 cut(s)	386
HapII	CCGG	1 cut(s)	654
Hin1II	CATG	2 cut(s)	361, 470
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HindIII	AAGCTT	1 cut(s)	700
HinfI	GANTC	6 cut(s)	248, 273, 409, 414, 577, 632
HpaII	CCGG	1 cut(s)	654
Hpy166II	GTNNAC	3 cut(s)	256, 292, 475
Hpy188I	TCNGA	4 cut(s)	43, 104, 127, 198
Hpy188III	TCNNGA	4 cut(s)	32, 233, 358, 709
Hpy8I	GTNNAC	3 cut(s)	256, 292, 475
HpyAV	CCTTC	3 cut(s)	31, 208, 528
HpyCH4III	ACNGT	2 cut(s)	109, 405
HpyCH4V	TGCA	4 cut(s)	279, 380, 565, 616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	2 cut(s)	197, 341
Hsp92II	CATG	2 cut(s)	361, 470
Ksp22I	TGATCA	2 cut(s)	46, 711
Kzo9I	GATC	4 cut(s)	46, 186, 395, 711
LmnI	GCTCC	2 cut(s)	367, 463
LpnPI	CCDG	8 cut(s)	45, 90, 246, 280, 350, 466, 667, 722
Lsp1109I	GCAGC	2 cut(s)	549, 628
MaeI	CTAG	1 cut(s)	72
MalI	GATC	4 cut(s)	48, 188, 397, 713
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	4 cut(s)	46, 186, 395, 711
MboII	GAAGA	1 cut(s)	47
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	2 cut(s)	186, 395
MluCI	AATT	5 cut(s)	219, 285, 424, 549, 724
MlyI	GAGTC	3 cut(s)	257, 282, 418
MmeI	TCCRAC	1 cut(s)	191
MnlI	CCTC	3 cut(s)	35, 350, 382
MroXI	GAANNNNTTC	1 cut(s)	576
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	2 cut(s)	149, 167
MspCI	CTTAAG	1 cut(s)	242
MspI	CCGG	1 cut(s)	654
MunI	CAATTG	1 cut(s)	549
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	81
NdeII	GATC	4 cut(s)	46, 186, 395, 711
NlaIII	CATG	2 cut(s)	361, 470
NspI	RCATGY	1 cut(s)	470
PagI	TCATGA	1 cut(s)	357
PdmI	GAANNNNTTC	1 cut(s)	576
PfeI	GAWTC	3 cut(s)	414, 577, 632
PinAI	ACCGGT	1 cut(s)	653
PkrI	GCNGC	3 cut(s)	6, 564, 618
PleI	GAGTC	3 cut(s)	256, 281, 417
PpsI	GAGTC	3 cut(s)	256, 281, 417
PstI	CTGCAG	1 cut(s)	618
PsuI	RGATCY	2 cut(s)	186, 395
RseI	CAYNNNNRTG	2 cut(s)	149, 167
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	3 cut(s)	5, 563, 617
Sau3AI	GATC	4 cut(s)	46, 186, 395, 711
SchI	GAGTC	3 cut(s)	257, 282, 418
SfcI	CTRYAG	2 cut(s)	190, 614
SmiMI	CAYNNNNRTG	2 cut(s)	149, 167
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	5 cut(s)	219, 285, 424, 549, 724
SsiI	CCGC	2 cut(s)	82, 201
SspMI	CTAG	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	109, 405
TaqI	TCGA	1 cut(s)	412
TasI	AATT	5 cut(s)	219, 285, 424, 549, 724
TfiI	GAWTC	3 cut(s)	414, 577, 632
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	446
TseI	GCWGC	3 cut(s)	4, 562, 616
TspDTI	ATGAA	7 cut(s)	51, 144, 330, 346, 374, 585, 609
TspGWI	ACGGA	4 cut(s)	161, 179, 197, 311
TspRI	CASTG	1 cut(s)	446
Vha464I	CTTAAG	1 cut(s)	242
XapI	RAATTY	1 cut(s)	424
XceI	RCATGY	1 cut(s)	470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	291
XmnI	GAANNNNTTC	1 cut(s)	576
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.