RLG00000014164

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015773
Physical Location & Seq
Forward (+)
48450792 .. 48451487
696 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014164

Sequence Viewer

Length: 477 bp
ATGGCTTCGCTAGGGCTTGCTTGTGGCGGCGCCAAGTTTCTGGCCTGGGTAGATGGCTTCTCAGCTCTCTCCGGTCATCCTGGGAAGGATGGAGGTGGAGTTCCTCTTCGTCAACGTGCTTCTAAACCTGTCGAACTCTGGTTTCGACTTCTTTTCTTGGTTATGTTGATCTGCGGATCTGCTATGGCTATGGGCTCTGATCCAGTGATGACACTTGGTTGCGATGCTGGCGGAGGTGTGATTAGCTACAATGGGCTAGCTGAGGGCGTCTTCTTTGGGGCGAAGCCGGGTTGTGCTCGTAACGGTGACATGGTGGTCGGCAGTGCAGAGGACTGCAGGGATACTAGGGATTCTCAGGTGTCCTACTCAGCTGATGGTTACGAGTATTTGGGCCACTTGGGCCTCAGACTGGATGGTGGGCCTCATCGTTGGGCTTGCATCTGGGGTTATGCAAGGCTTGGACTACCTCTTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

16.51

Weight (kDa)

6.25

Isoelectric Point (pI)

30.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 314
AccB1I GGYRCC 1 cut(s) 29
AciI CCGC 3 cut(s) 27, 174, 231
AclWI GGATC 2 cut(s) 184, 194
AcyI GRCGYC 2 cut(s) 30, 267
AfiI CCNNNNNNNGG 1 cut(s) 409
AjnI CCWGG 2 cut(s) 44, 79
AloI GAACNNNNNNTCC 2 cut(s) 84, 116
AluBI AGCT 4 cut(s) 65, 246, 260, 371
AluI AGCT 4 cut(s) 65, 246, 260, 371
Alw21I GWGCWC 1 cut(s) 298
AlwI GGATC 2 cut(s) 184, 194
AoxI GGCC 4 cut(s) 42, 391, 400, 419
ArsI GACNNNNNNTTYG 1 cut(s) 453
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 3 cut(s) 391, 400, 419
AsuC2I CCSGG 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 317
AsuNHI GCTAGC 1 cut(s) 256
BanI GGYRCC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 262
Bbv12I GWGCWC 1 cut(s) 298
BbvCI CCTCAGC 1 cut(s) 261
BccI CCATC 4 cut(s) 47, 83, 368, 407
BciT130I CCWGG 2 cut(s) 46, 81
BciVI GTATCC 1 cut(s) 334
BcnI CCSGG 1 cut(s) 288
BfaI CTAG 4 cut(s) 11, 257, 345, 475
BfmI CTRYAG 1 cut(s) 334
BfoI RGCGCY 1 cut(s) 33
BfuI GTATCC 1 cut(s) 334
BglI GCCNNNNNGGC 1 cut(s) 399
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
Bme1390I CCNGG 3 cut(s) 46, 81, 288
BmgT120I GGNCC 3 cut(s) 391, 400, 419
BmiI GGNNCC 1 cut(s) 31
BmrFI CCNGG 3 cut(s) 46, 81, 288
BmsI GCATC 2 cut(s) 214, 447
BmtI GCTAGC 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 262
Bpu10I CCTNAGC 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 288
BsaHI GRCGYC 2 cut(s) 30, 267
BsaJI CCNNGG 2 cut(s) 45, 80
BsaWI WCCGGW 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 409
Bse1I ACTGG 2 cut(s) 203, 414
BseBI CCWGG 2 cut(s) 46, 81
BseDI CCNNGG 2 cut(s) 45, 80
BseGI GGATG 3 cut(s) 76, 94, 418
BseLI CCNNNNNNNGG 1 cut(s) 409
BseMII CTCAG 5 cut(s) 75, 252, 368, 381, 418
BseNI ACTGG 2 cut(s) 203, 414
BsgI GTGCAG 1 cut(s) 345
BshFI GGCC 4 cut(s) 44, 393, 402, 421
BshNI GGYRCC 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 298
BsiSI CCGG 2 cut(s) 72, 287
BslI CCNNNNNNNGG 1 cut(s) 409
BsnI GGCC 4 cut(s) 44, 393, 402, 421
Bsp1286I GDGCHC 2 cut(s) 197, 298
Bsp143I GATC 3 cut(s) 168, 176, 199
BspACI CCGC 3 cut(s) 27, 174, 231
BspANI GGCC 4 cut(s) 44, 393, 402, 421
BspCNI CTCAG 5 cut(s) 74, 253, 367, 380, 417
BspLI GGNNCC 1 cut(s) 31
BspMAI CTGCAG 1 cut(s) 338
BspOI GCTAGC 1 cut(s) 260
BspPI GGATC 2 cut(s) 184, 194
BspT107I GGYRCC 1 cut(s) 29
BsrI ACTGG 2 cut(s) 203, 414
BssECI CCNNGG 2 cut(s) 45, 80
BssMI GATC 3 cut(s) 168, 176, 199
BssNI GRCGYC 2 cut(s) 30, 267
Bst2UI CCWGG 2 cut(s) 46, 81
Bst4CI ACNGT 1 cut(s) 305
Bst6I CTCTTC 1 cut(s) 111
BstACI GRCGYC 2 cut(s) 30, 267
BstC8I GCNNGC 4 cut(s) 18, 229, 258, 436
BstDEI CTNAG 5 cut(s) 61, 261, 354, 367, 404
BstF5I GGATG 3 cut(s) 76, 94, 418
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 3 cut(s) 171, 179, 202
BstMBI GATC 3 cut(s) 168, 176, 199
BstMWI GCNNNNNNNGC 2 cut(s) 228, 399
BstNI CCWGG 2 cut(s) 46, 81
BstSCI CCNGG 3 cut(s) 44, 79, 286
BstSFI CTRYAG 1 cut(s) 334
BstV2I GAAGAC 1 cut(s) 262
BstX2I RGATCY 1 cut(s) 176
BstXI CCANNNNNNTGG 1 cut(s) 40
BstYI RGATCY 1 cut(s) 176
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 4 cut(s) 44, 393, 402, 421
BtgZI GCGATG 1 cut(s) 237
BtsCI GGATG 3 cut(s) 76, 94, 418
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 2 cut(s) 210, 328
Cac8I GCNNGC 4 cut(s) 18, 229, 258, 436
CfoI GCGC 1 cut(s) 32
Cfr13I GGNCC 3 cut(s) 391, 400, 419
CseI GACGC 1 cut(s) 256
CviAII CATG 1 cut(s) 310
DdeI CTNAG 5 cut(s) 61, 261, 354, 367, 404
DinI GGCGCC 1 cut(s) 31
DpnI GATC 3 cut(s) 170, 178, 201
DpnII GATC 3 cut(s) 168, 176, 199
DrdI GACNNNNNNGTC 1 cut(s) 314
DseDI GACNNNNNNGTC 1 cut(s) 314
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
EciI GGCGGA 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 197
EcoRII CCWGG 2 cut(s) 44, 79
EcoT38I GRGCYC 1 cut(s) 197
EgeI GGCGCC 1 cut(s) 31
EheI GGCGCC 1 cut(s) 31
FaeI CATG 1 cut(s) 313
FaiI YATR 5 cut(s) 164, 185, 191, 311, 450
FatI CATG 1 cut(s) 309
Fnu4HI GCNGC 1 cut(s) 28
FokI GGATG 3 cut(s) 63, 101, 425
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 4 cut(s) 11, 257, 345, 475
GlaI GCGC 1 cut(s) 31
GluI GCNGC 1 cut(s) 28
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 4 cut(s) 44, 393, 402, 421
HapII CCGG 2 cut(s) 72, 287
HgaI GACGC 1 cut(s) 256
HhaI GCGC 1 cut(s) 32
Hin1I GRCGYC 2 cut(s) 30, 267
Hin1II CATG 1 cut(s) 313
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HincII GTYRAC 1 cut(s) 113
HindII GTYRAC 1 cut(s) 113
HinfI GANTC 1 cut(s) 350
HpaII CCGG 2 cut(s) 72, 287
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 199, 407
Hpy8I GTNNAC 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 4 cut(s) 326, 336, 438, 452
HpyF10VI GCNNNNNNNGC 2 cut(s) 228, 399
HpyF3I CTNAG 5 cut(s) 61, 261, 354, 367, 404
HpySE526I ACGT 1 cut(s) 115
Hsp92I GRCGYC 2 cut(s) 30, 267
Hsp92II CATG 1 cut(s) 313
HspAI GCGC 1 cut(s) 30
KasI GGCGCC 1 cut(s) 29
Kzo9I GATC 3 cut(s) 168, 176, 199
LweI GCATC 2 cut(s) 214, 447
MaeI CTAG 4 cut(s) 11, 257, 345, 475
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 3 cut(s) 299, 305, 377
MalI GATC 3 cut(s) 170, 178, 201
MboI GATC 3 cut(s) 168, 176, 199
MboII GAAGA 2 cut(s) 98, 262
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 2 cut(s) 197, 298
Mly113I GGCGCC 1 cut(s) 30
MnlI CCTC 8 cut(s) 86, 114, 227, 256, 322, 413, 432, 477
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 2 cut(s) 72, 287
MspR9I CCNGG 3 cut(s) 46, 81, 288
MvaI CCWGG 2 cut(s) 46, 81
MwoI GCNNNNNNNGC 2 cut(s) 228, 399
NarI GGCGCC 1 cut(s) 30
NciI CCSGG 1 cut(s) 288
NdeII GATC 3 cut(s) 168, 176, 199
NheI GCTAGC 1 cut(s) 256
NlaIII CATG 1 cut(s) 313
NlaIV GGNNCC 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 305
PfeI GAWTC 1 cut(s) 350
PkrI GCNGC 1 cut(s) 29
PluTI GGCGCC 1 cut(s) 33
Psp6I CCWGG 2 cut(s) 44, 79
PspGI CCWGG 2 cut(s) 44, 79
PspN4I GGNNCC 1 cut(s) 31
PspPI GGNCC 3 cut(s) 391, 400, 419
PstI CTGCAG 1 cut(s) 338
PsuI RGATCY 1 cut(s) 176
PvuII CAGCTG 1 cut(s) 371
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 3 cut(s) 168, 176, 199
Sau96I GGNCC 3 cut(s) 391, 400, 419
ScrFI CCNGG 3 cut(s) 46, 81, 288
SduI GDGCHC 2 cut(s) 197, 298
SfaNI GCATC 2 cut(s) 214, 447
SfcI CTRYAG 1 cut(s) 334
SfiI GGCCNNNNNGGCC 1 cut(s) 399
SfoI GGCGCC 1 cut(s) 31
SsiI CCGC 3 cut(s) 27, 174, 231
SspDI GGCGCC 1 cut(s) 29
SspMI CTAG 4 cut(s) 11, 257, 345, 475
StyD4I CCNGG 3 cut(s) 44, 79, 286
TaaI ACNGT 1 cut(s) 305
TaiI ACGT 1 cut(s) 118
TaqI TCGA 2 cut(s) 132, 145
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 1 cut(s) 350
TscAI CASTG 2 cut(s) 210, 328
TseFI GTSAC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 305
TspRI CASTG 2 cut(s) 210, 328
XspI CTAG 4 cut(s) 11, 257, 345, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.