Rh2CG062100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0015773
Physical Location & Seq
Forward (+)
5117523 .. 5117846
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG062100.1

Sequence Viewer

Length: 324 bp
ATGGCTTTGGTCTCCGGTTCGGTGGTGGTTGCTACTGGTGGTTTTGATTGCCAGTTTTGGCGAGTTGGTACGGCTTTGCCGTTCCATCAGGTTGGTGGAGGCTTTATGGTGGTGGTTGCGTACGGTAGCCCATCTACTAGGGTAGAGGATTGGCAGTCTGGGTTGAGTCAGATCATCAAGACACGTTGTTACTTAGCTTCCGGCGAGGGGTGGAGATCTGGTAGGACGGCTGCCGGTGTTTCTAGTTTCGCTGGCATCGACGTGTCTCTTACGGGAGGTTTCGATAATGAGGGCGGTGTCCCTGTTGGCAGCGGCAGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

10.95

Weight (kDa)

6.01

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 294, 312
AfaI GTAC 2 cut(s) 70, 122
AfiI CCNNNNNNNGG 1 cut(s) 207
AflIII ACRYGT 2 cut(s) 182, 261
AjiI CACGTC 1 cut(s) 262
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw26I GTCTC 2 cut(s) 16, 270
ApeKI GCWGC 3 cut(s) 230, 309, 315
BbvI GCAGC 1 cut(s) 217
BccI CCATC 2 cut(s) 93, 139
BceAI ACGGC 3 cut(s) 64, 87, 243
BcoDI GTCTC 2 cut(s) 16, 270
BfaI CTAG 2 cut(s) 138, 243
BglII AGATCT 1 cut(s) 215
BisI GCNGC 4 cut(s) 231, 310, 313, 316
BlsI GCNGC 4 cut(s) 232, 311, 314, 317
BmgBI CACGTC 1 cut(s) 262
BmsI GCATC 1 cut(s) 264
BsaI GGTCTC 1 cut(s) 16
BsaWI WCCGGW 1 cut(s) 14
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 2 cut(s) 40, 52
BseLI CCNNNNNNNGG 1 cut(s) 207
BseNI ACTGG 2 cut(s) 40, 52
BseXI GCAGC 1 cut(s) 217
BsiSI CCGG 3 cut(s) 15, 201, 234
BsiWI CGTACG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 207
BsmAI GTCTC 2 cut(s) 16, 270
BsmFI GGGAC 1 cut(s) 284
Bso31I GGTCTC 1 cut(s) 16
Bsp143I GATC 2 cut(s) 171, 215
BspACI CCGC 2 cut(s) 294, 312
BspTNI GGTCTC 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 2 cut(s) 40, 52
BssAI RCCGGY 1 cut(s) 233
BssMI GATC 2 cut(s) 171, 215
Bst4CI ACNGT 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 1 cut(s) 193
BstKTI GATC 2 cut(s) 174, 218
BstMAI GTCTC 2 cut(s) 16, 270
BstMBI GATC 2 cut(s) 171, 215
BstMWI GCNNNNNNNGC 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 217
BstX2I RGATCY 1 cut(s) 215
BstXI CCANNNNNNTGG 1 cut(s) 92
BstYI RGATCY 1 cut(s) 215
BtrI CACGTC 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 253
Cfr10I RCCGGY 1 cut(s) 233
Csp6I GTAC 2 cut(s) 69, 121
CviJI RGCY 7 cut(s) 5, 74, 102, 129, 197, 230, 318
CviKI_1 RGCY 7 cut(s) 5, 74, 102, 129, 197, 230, 318
CviQI GTAC 2 cut(s) 69, 121
DdeI CTNAG 1 cut(s) 193
DpnI GATC 2 cut(s) 173, 217
DpnII GATC 2 cut(s) 171, 215
Eco31I GGTCTC 1 cut(s) 16
FaiI YATR 1 cut(s) 107
FaqI GGGAC 1 cut(s) 284
Fnu4HI GCNGC 4 cut(s) 231, 310, 313, 316
Fsp4HI GCNGC 4 cut(s) 231, 310, 313, 316
FspBI CTAG 2 cut(s) 138, 243
GluI GCNGC 4 cut(s) 231, 310, 313, 316
HapII CCGG 3 cut(s) 15, 201, 234
HinfI GANTC 1 cut(s) 166
HpaII CCGG 3 cut(s) 15, 201, 234
Hpy188I TCNGA 1 cut(s) 171
Hpy188III TCNNGA 1 cut(s) 178
Hpy99I CGWCG 1 cut(s) 263
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 2 cut(s) 184, 261
HpyF10VI GCNNNNNNNGC 1 cut(s) 315
HpyF3I CTNAG 1 cut(s) 193
HpySE526I ACGT 2 cut(s) 184, 261
Kzo9I GATC 2 cut(s) 171, 215
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 1 cut(s) 264
MaeI CTAG 2 cut(s) 138, 243
MaeII ACGT 2 cut(s) 184, 261
MaeIII GTNAC 1 cut(s) 188
MalI GATC 2 cut(s) 173, 217
MboI GATC 2 cut(s) 171, 215
MflI RGATCY 1 cut(s) 215
MlyI GAGTC 1 cut(s) 175
MnlI CCTC 5 cut(s) 92, 139, 199, 269, 283
MseI TTAA 1 cut(s) 322
MslI CAYNNNNRTG 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 312
MspI CCGG 3 cut(s) 15, 201, 234
MwoI GCNNNNNNNGC 1 cut(s) 315
NdeII GATC 2 cut(s) 171, 215
PcsI WCGNNNNNNNCGW 2 cut(s) 77, 255
Pfl23II CGTACG 1 cut(s) 120
PkrI GCNGC 4 cut(s) 232, 311, 314, 317
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
PspLI CGTACG 1 cut(s) 120
PsuI RGATCY 1 cut(s) 215
RsaI GTAC 2 cut(s) 70, 122
RsaNI GTAC 2 cut(s) 69, 121
RseI CAYNNNNRTG 1 cut(s) 260
SaqAI TTAA 1 cut(s) 322
SatI GCNGC 4 cut(s) 231, 310, 313, 316
Sau3AI GATC 2 cut(s) 171, 215
SchI GAGTC 1 cut(s) 175
SetI ASST 5 cut(s) 93, 187, 199, 264, 280
SfaNI GCATC 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 260
SsiI CCGC 2 cut(s) 294, 312
SspMI CTAG 2 cut(s) 138, 243
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 2 cut(s) 187, 264
TaqI TCGA 2 cut(s) 258, 282
TauI GCSGC 1 cut(s) 315
Tru1I TTAA 1 cut(s) 322
Tru9I TTAA 1 cut(s) 322
TseI GCWGC 3 cut(s) 230, 309, 315
XcmI CCANNNNNNNNNTGG 1 cut(s) 92
XspI CTAG 2 cut(s) 138, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.