Rh7BG335500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015773
Physical Location & Seq
Reverse (-)
34924690 .. 34925388
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG335500.1

Sequence Viewer

Length: 699 bp
ATGGAGTACAAGATGTACTATCATAATAAGGAGATGGCTTCACTAAGGCTTCCTGGTGGCGGCGTCAAGTTTCTGGCCTGGGTAGATTGCTTCTCCTCTCTCTCCGGTCAGCTTGGGAAGGATGGAGGCGAAGTTCCTCTTCGTCAACGTGCTTCTGAACCTATCGAACTCTGGTTTCGACTTCTTTTCCGGGTCATGTTGATCTGCGGACCTGCTATGGCTATAGCCTCCGATCCAGAAGTGGTGGCTCCTGGTGGTTTTGGTTTGTGGGATGCCGACTGGACCCTATTTCGAGTTTTTGAGGCGGATTCGGTACGAGATCCGGAAGTGGGTACAAGAGCGAGCGGTGCTAGACCGTGGCCGGATTTGCTCCCAAAGGCTCGACTTTGGGTGGACTGGTTTGACGAAGGTCGGACGACGGCCAAGGGTGTTTGGTTGTCTGTTGACGACGGCGAAAACTGGTCGAGGTCTTCTACTCGTGACGGCGGCATTGTTCATGAGTGCTGGGACATGGTCTGGCATGCGTCGGCTGGGTTGGGAGACTGGAGTTGTGATGGTGGCAGGTTTGGTGTAGATCACGGCGGTGATCACGATGATGGCGGCGGCGGAGATGATCAAGTTGGCAGTAACTCTGCTAGGGTTTGTGTTGATTGGTTGTTTTGGGCCTGGGTCTGGTCTAGGTTGGGTGTCCCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.72

Weight (kDa)

4.77

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 220, 552
AccBSI CCGCTC 1 cut(s) 345
AccIII TCCGGA 1 cut(s) 322
AciI CCGC 9 cut(s) 60, 207, 305, 345, 486, 582, 600, 603, 606
AclWI GGATC 2 cut(s) 227, 314
AcoI YGGCCR 2 cut(s) 359, 420
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 4 cut(s) 8, 17, 315, 334
AfiI CCNNNNNNNGG 3 cut(s) 59, 329, 672
AjnI CCWGG 4 cut(s) 52, 77, 250, 665
AleI CACNNNNGTG 1 cut(s) 582
AloI GAACNNNNNNTCC 2 cut(s) 117, 149
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 534
AlwI GGATC 2 cut(s) 227, 314
Aor13HI TCCGGA 1 cut(s) 322
AoxI GGCC 4 cut(s) 75, 359, 420, 663
AspS9I GGNCC 3 cut(s) 209, 282, 663
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 596
AvaII GGWCC 2 cut(s) 209, 282
BauI CACGAG 1 cut(s) 477
BbsI GAAGAC 1 cut(s) 462
BccI CCATC 4 cut(s) 28, 116, 548, 590
BceAI ACGGC 4 cut(s) 435, 466, 499, 595
BciT130I CCWGG 4 cut(s) 54, 79, 252, 667
BclI TGATCA 2 cut(s) 586, 613
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 534
BfaI CTAG 3 cut(s) 351, 636, 678
BfmI CTRYAG 1 cut(s) 222
BfuAI ACCTGC 2 cut(s) 220, 552
BisI GCNGC 4 cut(s) 61, 487, 601, 604
BlsI GCNGC 4 cut(s) 62, 488, 602, 605
Bme1390I CCNGG 5 cut(s) 54, 79, 191, 252, 667
Bme18I GGWCC 2 cut(s) 209, 282
BmgT120I GGNCC 3 cut(s) 209, 282, 663
BmiI GGNNCC 2 cut(s) 249, 284
BmrFI CCNGG 5 cut(s) 54, 79, 191, 252, 667
BmsI GCATC 1 cut(s) 262
BoxI GACNNNNGTC 1 cut(s) 408
BpiI GAAGAC 1 cut(s) 462
BpmI CTGGAG 1 cut(s) 565
BpuMI CCSGG 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 4 cut(s) 78, 356, 423, 666
BsaWI WCCGGW 2 cut(s) 104, 322
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 329, 672
Bse1I ACTGG 4 cut(s) 284, 401, 464, 548
BseAI TCCGGA 1 cut(s) 322
BseBI CCWGG 4 cut(s) 54, 79, 252, 667
BseDI CCNNGG 4 cut(s) 78, 356, 423, 666
BseGI GGATG 2 cut(s) 127, 277
BseLI CCNNNNNNNGG 3 cut(s) 59, 329, 672
BseNI ACTGG 4 cut(s) 284, 401, 464, 548
BseRI GAGGAG 1 cut(s) 85
BseYI CCCAGC 2 cut(s) 504, 530
BshFI GGCC 4 cut(s) 77, 361, 422, 665
BsiSI CCGG 4 cut(s) 105, 190, 323, 362
BslFI GGGAC 2 cut(s) 521, 674
BslI CCNNNNNNNGG 3 cut(s) 59, 329, 672
BsmAI GTCTC 1 cut(s) 534
BsmFI GGGAC 2 cut(s) 521, 674
BsnI GGCC 4 cut(s) 77, 361, 422, 665
Bsp13I TCCGGA 1 cut(s) 322
Bsp143I GATC 6 cut(s) 201, 232, 319, 574, 586, 613
BspACI CCGC 9 cut(s) 60, 207, 305, 345, 486, 582, 600, 603, 606
BspANI GGCC 4 cut(s) 77, 361, 422, 665
BspEI TCCGGA 1 cut(s) 322
BspHI TCATGA 1 cut(s) 496
BspLI GGNNCC 2 cut(s) 249, 284
BspMI ACCTGC 2 cut(s) 220, 552
BspPI GGATC 2 cut(s) 227, 314
BsrBI CCGCTC 1 cut(s) 345
BsrI ACTGG 4 cut(s) 284, 401, 464, 548
BssECI CCNNGG 4 cut(s) 78, 356, 423, 666
BssMI GATC 6 cut(s) 201, 232, 319, 574, 586, 613
BssNI GRCGYC 1 cut(s) 63
BssSI CACGAG 1 cut(s) 477
BssT1I CCWWGG 1 cut(s) 423
Bst2BI CACGAG 1 cut(s) 477
Bst2UI CCWGG 4 cut(s) 54, 79, 252, 667
Bst4CI ACNGT 1 cut(s) 357
Bst6I CTCTTC 1 cut(s) 144
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 2 cut(s) 343, 522
BstDEI CTNAG 1 cut(s) 44
BstDSI CCRYGG 1 cut(s) 356
BstF5I GGATG 2 cut(s) 127, 277
BstKTI GATC 6 cut(s) 204, 235, 322, 577, 589, 616
BstMAI GTCTC 1 cut(s) 534
BstMBI GATC 6 cut(s) 201, 232, 319, 574, 586, 613
BstMWI GCNNNNNNNGC 2 cut(s) 347, 367
BstNI CCWGG 4 cut(s) 54, 79, 252, 667
BstNSI RCATGY 1 cut(s) 524
BstPAI GACNNNNGTC 1 cut(s) 408
BstSCI CCNGG 5 cut(s) 52, 77, 189, 250, 665
BstSFI CTRYAG 1 cut(s) 222
BstV2I GAAGAC 1 cut(s) 462
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BsuRI GGCC 4 cut(s) 77, 361, 422, 665
BtgI CCRYGG 1 cut(s) 356
BtsCI GGATG 2 cut(s) 127, 277
BveI ACCTGC 2 cut(s) 220, 552
Cac8I GCNNGC 2 cut(s) 343, 522
CciI TCATGA 1 cut(s) 496
Cfr13I GGNCC 3 cut(s) 209, 282, 663
CseI GACGC 2 cut(s) 52, 513
Csp6I GTAC 4 cut(s) 7, 16, 314, 333
CviAII CATG 4 cut(s) 196, 497, 511, 521
CviQI GTAC 4 cut(s) 7, 16, 314, 333
DdeI CTNAG 1 cut(s) 44
DpnI GATC 6 cut(s) 203, 234, 321, 576, 588, 615
DpnII GATC 6 cut(s) 201, 232, 319, 574, 586, 613
EaeI YGGCCR 2 cut(s) 359, 420
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
EciI GGCGGA 2 cut(s) 320, 621
Eco130I CCWWGG 1 cut(s) 423
Eco47I GGWCC 2 cut(s) 209, 282
EcoRII CCWGG 4 cut(s) 52, 77, 250, 665
EcoT14I CCWWGG 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 4 cut(s) 199, 500, 514, 524
FaiI YATR 7 cut(s) 24, 197, 218, 224, 498, 512, 522
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FaqI GGGAC 2 cut(s) 521, 674
FatI CATG 4 cut(s) 195, 496, 510, 520
FbaI TGATCA 2 cut(s) 586, 613
Fnu4HI GCNGC 4 cut(s) 61, 487, 601, 604
FokI GGATG 2 cut(s) 134, 284
Fsp4HI GCNGC 4 cut(s) 61, 487, 601, 604
FspBI CTAG 3 cut(s) 351, 636, 678
GluI GCNGC 4 cut(s) 61, 487, 601, 604
GsaI CCCAGC 2 cut(s) 508, 534
GsuI CTGGAG 1 cut(s) 565
HaeIII GGCC 4 cut(s) 77, 361, 422, 665
HapII CCGG 4 cut(s) 105, 190, 323, 362
HgaI GACGC 2 cut(s) 52, 513
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 4 cut(s) 199, 500, 514, 524
HincII GTYRAC 2 cut(s) 146, 445
HindII GTYRAC 2 cut(s) 146, 445
HinfI GANTC 1 cut(s) 308
HpaII CCGG 4 cut(s) 105, 190, 323, 362
HphI GGTGA 1 cut(s) 596
Hpy166II GTNNAC 3 cut(s) 146, 394, 445
Hpy188I TCNGA 3 cut(s) 157, 232, 414
Hpy188III TCNNGA 5 cut(s) 236, 323, 479, 497, 590
Hpy8I GTNNAC 3 cut(s) 146, 394, 445
Hpy99I CGWCG 3 cut(s) 421, 452, 529
HpyAV CCTTC 2 cut(s) 112, 401
HpyCH4III ACNGT 1 cut(s) 357
HpyCH4IV ACGT 1 cut(s) 148
HpyF10VI GCNNNNNNNGC 2 cut(s) 347, 367
HpyF3I CTNAG 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 148
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 4 cut(s) 199, 500, 514, 524
Kpn2I TCCGGA 1 cut(s) 322
Ksp22I TGATCA 2 cut(s) 586, 613
Kzo9I GATC 6 cut(s) 201, 232, 319, 574, 586, 613
LmnI GCTCC 2 cut(s) 253, 375
LweI GCATC 1 cut(s) 262
MaeI CTAG 3 cut(s) 351, 636, 678
MaeII ACGT 1 cut(s) 148
MaeIII GTNAC 2 cut(s) 479, 626
MalI GATC 6 cut(s) 203, 234, 321, 576, 588, 615
MbiI CCGCTC 1 cut(s) 345
MboI GATC 6 cut(s) 201, 232, 319, 574, 586, 613
MboII GAAGA 2 cut(s) 131, 462
MflI RGATCY 1 cut(s) 319
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 6 cut(s) 106, 119, 147, 238, 295, 459
MroI TCCGGA 1 cut(s) 322
MslI CAYNNNNRTG 2 cut(s) 582, 594
MspI CCGG 4 cut(s) 105, 190, 323, 362
MspR9I CCNGG 5 cut(s) 54, 79, 191, 252, 667
MvaI CCWGG 4 cut(s) 54, 79, 252, 667
MwoI GCNNNNNNNGC 2 cut(s) 347, 367
NciI CCSGG 1 cut(s) 191
NdeII GATC 6 cut(s) 201, 232, 319, 574, 586, 613
NlaIII CATG 4 cut(s) 199, 500, 514, 524
NlaIV GGNNCC 2 cut(s) 249, 284
NmuCI GTSAC 1 cut(s) 479
NspI RCATGY 1 cut(s) 524
OliI CACNNNNGTG 1 cut(s) 582
PaeI GCATGC 1 cut(s) 524
PagI TCATGA 1 cut(s) 496
PfeI GAWTC 1 cut(s) 308
PflFI GACNNNGTC 1 cut(s) 512
PkrI GCNGC 4 cut(s) 62, 488, 602, 605
PshAI GACNNNNGTC 1 cut(s) 408
Psp6I CCWGG 4 cut(s) 52, 77, 250, 665
PspFI CCCAGC 2 cut(s) 504, 530
PspGI CCWGG 4 cut(s) 52, 77, 250, 665
PspN4I GGNNCC 2 cut(s) 249, 284
PspPI GGNCC 3 cut(s) 209, 282, 663
PsuI RGATCY 1 cut(s) 319
PsyI GACNNNGTC 1 cut(s) 512
RsaI GTAC 4 cut(s) 8, 17, 315, 334
RsaNI GTAC 4 cut(s) 7, 16, 314, 333
RseI CAYNNNNRTG 2 cut(s) 582, 594
SatI GCNGC 4 cut(s) 61, 487, 601, 604
Sau3AI GATC 6 cut(s) 201, 232, 319, 574, 586, 613
Sau96I GGNCC 3 cut(s) 209, 282, 663
ScrFI CCNGG 5 cut(s) 54, 79, 191, 252, 667
SetI ASST 8 cut(s) 114, 151, 163, 214, 412, 470, 566, 683
SfaNI GCATC 1 cut(s) 262
SfcI CTRYAG 1 cut(s) 222
SinI GGWCC 2 cut(s) 209, 282
SmiMI CAYNNNNRTG 2 cut(s) 582, 594
SphI GCATGC 1 cut(s) 524
SsiI CCGC 9 cut(s) 60, 207, 305, 345, 486, 582, 600, 603, 606
SspMI CTAG 3 cut(s) 351, 636, 678
StyD4I CCNGG 5 cut(s) 52, 77, 189, 250, 665
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 1 cut(s) 357
TaiI ACGT 1 cut(s) 151
TaqI TCGA 5 cut(s) 165, 178, 292, 382, 464
TatI WGTACW 2 cut(s) 6, 15
TauI GCSGC 4 cut(s) 63, 489, 603, 606
TfiI GAWTC 1 cut(s) 308
TseFI GTSAC 1 cut(s) 479
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 1 cut(s) 485
Tth111I GACNNNGTC 1 cut(s) 512
VpaK11BI GGWCC 2 cut(s) 209, 282
XceI RCATGY 1 cut(s) 524
XspI CTAG 3 cut(s) 351, 636, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.