Rw1G009780
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0015773
Physical Location & Seq
Reverse (-)
21718087 .. 21739899
21813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G009780.1

Sequence Viewer

Length: 309 bp
ATGGTTCGTTCTTATATAGCAAAGGCCCAATTATATACCATCTTAGAGCTGTGCCGGGTATTTGACCAGATATTCAAGGAACACTTGGATGGAGGAGGTGATTCCATAGGGAATGATGCGCAAAGCAATGCTTTTAGTAGGGTTGAGGATTGGCGGCCTAGGTTTACAAGGATTATCGAGCACTTGGATACGTGGAATCCGGCGAGGGGTGGAGGCCCAGTAGTGATGGATACGGGTTGGCAGATTGCCGATCATCTCACCAAAAAGTACTTCATCACAGTAATCGGCAAAAGAACAAAAAAGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

102

Amino Acids

11.76

Weight (kDa)

9.17

Isoelectric Point (pI)

34.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 120
AciI CCGC 1 cut(s) 154
AfaI GTAC 2 cut(s) 269, 305
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 1 cut(s) 76
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
Alw21I GWGCWC 1 cut(s) 183
AoxI GGCC 3 cut(s) 24, 155, 214
AspA2I CCTAGG 1 cut(s) 158
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 2 cut(s) 25, 215
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 110, 250
AvrII CCTAGG 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 183
BccI CCATC 3 cut(s) 47, 83, 220
BciVI GTATCC 2 cut(s) 181, 223
BcnI CCSGG 1 cut(s) 56
BfaI CTAG 1 cut(s) 159
BfuI GTATCC 2 cut(s) 181, 223
BisI GCNGC 1 cut(s) 155
BlnI CCTAGG 1 cut(s) 158
BlsI GCNGC 1 cut(s) 156
BmcAI AGTACT 2 cut(s) 269, 305
Bme1390I CCNGG 1 cut(s) 56
BmgT120I GGNCC 2 cut(s) 25, 215
BmrFI CCNGG 1 cut(s) 56
BmrI ACTGGG 1 cut(s) 212
BmsI GCATC 1 cut(s) 106
BmuI ACTGGG 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 56
BsaAI YACGTR 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 158
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 158
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMI GCAATG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 108
BshFI GGCC 3 cut(s) 26, 157, 216
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 2 cut(s) 55, 200
BslI CCNNNNNNNGG 1 cut(s) 206
BsnI GGCC 3 cut(s) 26, 157, 216
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 1 cut(s) 250
BspACI CCGC 1 cut(s) 154
BspANI GGCC 3 cut(s) 26, 157, 216
BsrDI GCAATG 1 cut(s) 133
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 1 cut(s) 250
BssT1I CCWWGG 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 280
BstBAI YACGTR 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 43
BstF5I GGATG 1 cut(s) 94
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 1 cut(s) 253
BstMBI GATC 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 54
BsuI GTATCC 2 cut(s) 181, 223
BsuRI GGCC 3 cut(s) 26, 157, 216
BtsCI GGATG 1 cut(s) 94
CfoI GCGC 1 cut(s) 121
Cfr13I GGNCC 2 cut(s) 25, 215
Csp6I GTAC 2 cut(s) 268, 304
CviJI RGCY 4 cut(s) 26, 49, 157, 216
CviKI_1 RGCY 4 cut(s) 26, 49, 157, 216
CviQI GTAC 2 cut(s) 268, 304
DdeI CTNAG 1 cut(s) 43
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 158
FaiI YATR 5 cut(s) 15, 17, 34, 36, 107
FalI AAGNNNNNCTT 4 cut(s) 68, 100, 115, 147
Fnu4HI GCNGC 1 cut(s) 155
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 1 cut(s) 155
FspBI CTAG 1 cut(s) 159
FspI TGCGCA 1 cut(s) 120
GlaI GCGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 155
HaeIII GGCC 3 cut(s) 26, 157, 216
HapII CCGG 2 cut(s) 55, 200
HhaI GCGC 1 cut(s) 121
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HinfI GANTC 2 cut(s) 101, 196
HpaII CCGG 2 cut(s) 55, 200
HphI GGTGA 2 cut(s) 110, 250
Hpy166II GTNNAC 1 cut(s) 165
Hpy8I GTNNAC 1 cut(s) 165
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 43
HpySE526I ACGT 1 cut(s) 191
HspAI GCGC 1 cut(s) 119
Kzo9I GATC 1 cut(s) 250
LpnPI CCDG 4 cut(s) 68, 80, 213, 231
LweI GCATC 1 cut(s) 106
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 191
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 1 cut(s) 29
MnlI CCTC 5 cut(s) 86, 89, 139, 198, 206
MslI CAYNNNNRTG 1 cut(s) 87
MspI CCGG 2 cut(s) 55, 200
MspR9I CCNGG 1 cut(s) 56
NciI CCSGG 1 cut(s) 56
NdeII GATC 1 cut(s) 250
NsbI TGCGCA 1 cut(s) 120
PfeI GAWTC 2 cut(s) 101, 196
PkrI GCNGC 1 cut(s) 156
Ppu21I YACGTR 1 cut(s) 192
PspPI GGNCC 2 cut(s) 25, 215
RsaI GTAC 2 cut(s) 269, 305
RsaNI GTAC 2 cut(s) 268, 304
RseI CAYNNNNRTG 1 cut(s) 87
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 2 cut(s) 25, 215
ScaI AGTACT 2 cut(s) 269, 305
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 1 cut(s) 183
SetI ASST 4 cut(s) 51, 100, 164, 194
SfaNI GCATC 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 87
Sse9I AATT 1 cut(s) 29
SsiI CCGC 1 cut(s) 154
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 54
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 1 cut(s) 194
TaqI TCGA 1 cut(s) 177
TasI AATT 1 cut(s) 29
TatI WGTACW 2 cut(s) 267, 303
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 2 cut(s) 101, 196
TspDTI ATGAA 1 cut(s) 262
XmaJI CCTAGG 1 cut(s) 158
XspI CTAG 1 cut(s) 159
ZrmI AGTACT 2 cut(s) 269, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.