Rh5BG128900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0015773
Physical Location & Seq
Reverse (-)
12499156 .. 12499509
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG128900.1

Sequence Viewer

Length: 354 bp
ATGGCTATGGTCTCTGGTCCTGTGGTGGTCGCTTCTGGTGGGTGTGATGGCCAATTTTGGGTTCTTGATCGTCAGAGTGATGCGGCGTTGTCGTCCTTTTTGGTTGGCGGTGTCTCCATGGGGAATGATGCGCACGACAGTGGTTTCATTAGGGCTGAGGACTGGCGGCCTGGAATTACAAGGATTACTGAGGTGCTACCAAAATGGACTTCCGGCGAGGGGTGGAGCCCTGACGGTGGTGGATGCATGGTGGCAGATACCAGTGGTTATGGCTTATCTGAAGTCGACACCTTGGTGGCTGGTGGTTTCATTGGTGAGGGCGGCGTCCCTGGTGGTGGTTTTGACAGCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

11.86

Weight (kDa)

4.05

Isoelectric Point (pI)

37.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 132
AccI GTMKAC 1 cut(s) 285
AciI CCGC 4 cut(s) 83, 108, 166, 321
AcoI YGGCCR 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 300
AcyI GRCGYC 1 cut(s) 324
AfiI CCNNNNNNNGG 4 cut(s) 58, 219, 236, 335
AjnI CCWGG 2 cut(s) 169, 328
AjuI GAANNNNNNNTTGG 4 cut(s) 45, 77, 193, 225
AleI CACNNNNGTG 2 cut(s) 138, 293
Alw26I GTCTC 2 cut(s) 16, 118
AoxI GGCC 2 cut(s) 49, 167
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 326
AvaII GGWCC 1 cut(s) 17
BalI TGGCCA 1 cut(s) 51
BanII GRGCYC 1 cut(s) 230
BbvCI CCTCAGC 1 cut(s) 156
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 2 cut(s) 171, 330
BcoDI GTCTC 2 cut(s) 16, 118
BisI GCNGC 3 cut(s) 84, 167, 322
BlsI GCNGC 3 cut(s) 85, 168, 323
Bme1390I CCNGG 2 cut(s) 171, 330
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 227
BmrFI CCNGG 2 cut(s) 171, 330
BmsI GCATC 3 cut(s) 70, 118, 233
Bpu10I CCTNAGC 1 cut(s) 156
BsaHI GRCGYC 1 cut(s) 324
BsaI GGTCTC 1 cut(s) 16
BsaJI CCNNGG 3 cut(s) 117, 291, 328
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 219, 236, 335
Bse1I ACTGG 2 cut(s) 167, 261
BseBI CCWGG 2 cut(s) 171, 330
BseDI CCNNGG 3 cut(s) 117, 291, 328
BseGI GGATG 1 cut(s) 248
BseLI CCNNNNNNNGG 4 cut(s) 58, 219, 236, 335
BseMII CTCAG 2 cut(s) 147, 180
BseNI ACTGG 2 cut(s) 167, 261
BshFI GGCC 2 cut(s) 51, 169
BsiSI CCGG 1 cut(s) 213
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 4 cut(s) 58, 219, 236, 335
BsmAI GTCTC 2 cut(s) 16, 118
BsmFI GGGAC 1 cut(s) 311
BsnI GGCC 2 cut(s) 51, 169
Bso31I GGTCTC 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 1 cut(s) 67
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 4 cut(s) 83, 108, 166, 321
BspANI GGCC 2 cut(s) 51, 169
BspCNI CTCAG 2 cut(s) 148, 181
BspLI GGNNCC 1 cut(s) 227
BspTNI GGTCTC 1 cut(s) 16
BsrI ACTGG 2 cut(s) 167, 261
BssECI CCNNGG 3 cut(s) 117, 291, 328
BssMI GATC 1 cut(s) 67
BssNI GRCGYC 1 cut(s) 324
BssT1I CCWWGG 2 cut(s) 117, 291
Bst2UI CCWGG 2 cut(s) 171, 330
Bst4CI ACNGT 2 cut(s) 140, 236
BstACI GRCGYC 1 cut(s) 324
BstDEI CTNAG 2 cut(s) 156, 189
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 248
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 1 cut(s) 70
BstMAI GTCTC 2 cut(s) 16, 118
BstMBI GATC 1 cut(s) 67
BstNI CCWGG 2 cut(s) 171, 330
BstSCI CCNGG 2 cut(s) 169, 328
BsuRI GGCC 2 cut(s) 51, 169
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 1 cut(s) 248
BtsIMutI CAGTG 2 cut(s) 145, 268
CfoI GCGC 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 17
CseI GACGC 1 cut(s) 313
CviAII CATG 2 cut(s) 118, 247
CviJI RGCY 7 cut(s) 5, 51, 155, 169, 228, 273, 299
CviKI_1 RGCY 7 cut(s) 5, 51, 155, 169, 228, 273, 299
DdeI CTNAG 2 cut(s) 156, 189
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 49
Eco130I CCWWGG 2 cut(s) 117, 291
Eco24I GRGCYC 1 cut(s) 230
Eco31I GGTCTC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 300
EcoRII CCWGG 2 cut(s) 169, 328
EcoT14I CCWWGG 2 cut(s) 117, 291
EcoT22I ATGCAT 1 cut(s) 248
EcoT38I GRGCYC 1 cut(s) 230
ErhI CCWWGG 2 cut(s) 117, 291
FaeI CATG 2 cut(s) 121, 250
FaiI YATR 4 cut(s) 8, 119, 248, 270
FaqI GGGAC 1 cut(s) 311
FatI CATG 2 cut(s) 117, 246
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 3 cut(s) 84, 167, 322
FokI GGATG 1 cut(s) 255
FriOI GRGCYC 1 cut(s) 230
Fsp4HI GCNGC 3 cut(s) 84, 167, 322
FspAI RTGCGCAY 1 cut(s) 132
FspI TGCGCA 1 cut(s) 132
GlaI GCGC 1 cut(s) 132
GluI GCNGC 3 cut(s) 84, 167, 322
HaeIII GGCC 2 cut(s) 51, 169
HapII CCGG 1 cut(s) 213
HgaI GACGC 1 cut(s) 313
HhaI GCGC 1 cut(s) 133
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 2 cut(s) 121, 250
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HpaII CCGG 1 cut(s) 213
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 2 cut(s) 75, 280
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 1 cut(s) 286
HpyCH4III ACNGT 2 cut(s) 140, 236
HpyCH4V TGCA 1 cut(s) 246
HpyF3I CTNAG 2 cut(s) 156, 189
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 2 cut(s) 121, 250
HspAI GCGC 1 cut(s) 131
Kzo9I GATC 1 cut(s) 67
LmnI GCTCC 1 cut(s) 225
LweI GCATC 3 cut(s) 70, 118, 233
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MhlI GDGCHC 1 cut(s) 230
MlsI TGGCCA 1 cut(s) 51
MluCI AATT 2 cut(s) 53, 174
MluNI TGGCCA 1 cut(s) 51
MnlI CCTC 4 cut(s) 151, 184, 211, 310
Mox20I TGGCCA 1 cut(s) 51
Mph1103I ATGCAT 1 cut(s) 248
MscI TGGCCA 1 cut(s) 51
MslI CAYNNNNRTG 2 cut(s) 138, 293
Msp20I TGGCCA 1 cut(s) 51
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 2 cut(s) 171, 330
MvaI CCWGG 2 cut(s) 171, 330
NcoI CCATGG 1 cut(s) 117
NdeII GATC 1 cut(s) 67
NlaIII CATG 2 cut(s) 121, 250
NlaIV GGNNCC 1 cut(s) 227
NsbI TGCGCA 1 cut(s) 132
NsiI ATGCAT 1 cut(s) 248
OliI CACNNNNGTG 2 cut(s) 138, 293
PkrI GCNGC 3 cut(s) 85, 168, 323
Psp6I CCWGG 2 cut(s) 169, 328
PspGI CCWGG 2 cut(s) 169, 328
PspN4I GGNNCC 1 cut(s) 227
PspPI GGNCC 1 cut(s) 17
RseI CAYNNNNRTG 2 cut(s) 138, 293
SalI GTCGAC 1 cut(s) 284
SatI GCNGC 3 cut(s) 84, 167, 322
Sau3AI GATC 1 cut(s) 67
Sau96I GGNCC 1 cut(s) 17
ScrFI CCNGG 2 cut(s) 171, 330
SduI GDGCHC 1 cut(s) 230
SetI ASST 2 cut(s) 195, 293
SfaNI GCATC 3 cut(s) 70, 118, 233
SinI GGWCC 1 cut(s) 17
SmiMI CAYNNNNRTG 2 cut(s) 138, 293
Sse9I AATT 2 cut(s) 53, 174
SsiI CCGC 4 cut(s) 83, 108, 166, 321
StyD4I CCNGG 2 cut(s) 169, 328
StyI CCWWGG 2 cut(s) 117, 291
TaaI ACNGT 2 cut(s) 140, 236
TaqI TCGA 1 cut(s) 285
TasI AATT 2 cut(s) 53, 174
TauI GCSGC 3 cut(s) 86, 169, 324
TscAI CASTG 2 cut(s) 145, 268
TspDTI ATGAA 2 cut(s) 136, 298
TspRI CASTG 2 cut(s) 145, 268
VpaK11BI GGWCC 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 285
Zsp2I ATGCAT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.