Rh5DG075800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0015773
Physical Location & Seq
Forward (+)
6630725 .. 6631063
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG075800.1

Sequence Viewer

Length: 339 bp
ATGGCTTCGCTAGGGCTTGCTTGTGGCGGCGCCAAGTTTTTGGCCTGGGTAGATGACTTCTTAGCTCTCTCCAGTCAGCCTGGGAAGGATGGAGGCGGAGTTCCTCGTCGTCAACGTGCTTCTGAACCTGTCAAACTCTGGTTTCAACTTTTGTTCCTAGTTATGTTGATCTGCGGATCTGCTATGGCTATGGGCTCCGATCCAGTGGTGGTGGTTACTGGTGGGTTTGGTTTTGGGATACCGAATGGACCCTCTCTCAGGTTTTTGAGGCGGATTCAGTACGGGAATCGGAAGTGGGTACAAGAGCGGGTGATGCTAGATCTCTGTCGGAGGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.23

Weight (kDa)

10.19

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 29
AccBSI CCGCTC 1 cut(s) 307
AciI CCGC 5 cut(s) 27, 96, 174, 271, 307
AclWI GGATC 2 cut(s) 184, 194
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 2 cut(s) 281, 300
AfiI CCNNNNNNNGG 1 cut(s) 258
AgsI TTSAA 1 cut(s) 146
AjnI CCWGG 2 cut(s) 44, 79
AloI GAACNNNNNNTCC 2 cut(s) 84, 116
AluBI AGCT 2 cut(s) 65, 336
AluI AGCT 2 cut(s) 65, 336
AlwI GGATC 2 cut(s) 184, 194
AoxI GGCC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 322
AvaII GGWCC 1 cut(s) 248
BanI GGYRCC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 197
BccI CCATC 1 cut(s) 83
BciT130I CCWGG 2 cut(s) 46, 81
BciVI GTATCC 1 cut(s) 231
BfaI CTAG 4 cut(s) 11, 158, 317, 337
BfoI RGCGCY 1 cut(s) 33
BfuI GTATCC 1 cut(s) 231
BglII AGATCT 1 cut(s) 319
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
Bme1390I CCNGG 2 cut(s) 46, 81
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 3 cut(s) 31, 196, 250
BmrFI CCNGG 2 cut(s) 46, 81
BmsI GCATC 1 cut(s) 303
BpmI CTGGAG 1 cut(s) 55
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 45, 80
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 3 cut(s) 72, 203, 223
BseBI CCWGG 2 cut(s) 46, 81
BseDI CCNNGG 2 cut(s) 45, 80
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 271
BseNI ACTGG 3 cut(s) 72, 203, 223
BshFI GGCC 1 cut(s) 44
BshNI GGYRCC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 258
BsnI GGCC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 4 cut(s) 168, 176, 199, 319
BspACI CCGC 5 cut(s) 27, 96, 174, 271, 307
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 270
BspLI GGNNCC 3 cut(s) 31, 196, 250
BspPI GGATC 2 cut(s) 184, 194
BspT107I GGYRCC 1 cut(s) 29
BsrBI CCGCTC 1 cut(s) 307
BsrI ACTGG 3 cut(s) 72, 203, 223
BssECI CCNNGG 2 cut(s) 45, 80
BssMI GATC 4 cut(s) 168, 176, 199, 319
BssNI GRCGYC 1 cut(s) 30
Bst2UI CCWGG 2 cut(s) 46, 81
BstACI GRCGYC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 2 cut(s) 61, 257
BstENI CCTNNNNNAGG 1 cut(s) 256
BstF5I GGATG 1 cut(s) 94
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 4 cut(s) 171, 179, 202, 322
BstMBI GATC 4 cut(s) 168, 176, 199, 319
BstMWI GCNNNNNNNGC 1 cut(s) 313
BstNI CCWGG 2 cut(s) 46, 81
BstSCI CCNGG 2 cut(s) 44, 79
BstX2I RGATCY 2 cut(s) 176, 319
BstXI CCANNNNNNTGG 1 cut(s) 40
BstYI RGATCY 2 cut(s) 176, 319
BsuI GTATCC 1 cut(s) 231
BsuRI GGCC 1 cut(s) 44
BtsCI GGATG 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 18
CfoI GCGC 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 248
Csp6I GTAC 2 cut(s) 280, 299
CviJI RGCY 8 cut(s) 5, 16, 44, 65, 79, 188, 195, 336
CviKI_1 RGCY 8 cut(s) 5, 16, 44, 65, 79, 188, 195, 336
CviQI GTAC 2 cut(s) 280, 299
DdeI CTNAG 2 cut(s) 61, 257
DinI GGCGCC 1 cut(s) 31
DpnI GATC 4 cut(s) 170, 178, 201, 321
DpnII GATC 4 cut(s) 168, 176, 199, 319
EciI GGCGGA 2 cut(s) 111, 286
Eco24I GRGCYC 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 248
EcoNI CCTNNNNNAGG 1 cut(s) 256
EcoRII CCWGG 2 cut(s) 44, 79
EcoT38I GRGCYC 1 cut(s) 197
EgeI GGCGCC 1 cut(s) 31
EheI GGCGCC 1 cut(s) 31
FaiI YATR 3 cut(s) 164, 185, 191
FauI CCCGC 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 28
FokI GGATG 1 cut(s) 101
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 4 cut(s) 11, 158, 317, 337
GlaI GCGC 1 cut(s) 31
GluI GCNGC 1 cut(s) 28
GsuI CTGGAG 1 cut(s) 55
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 1 cut(s) 44
HhaI GCGC 1 cut(s) 32
Hin1I GRCGYC 1 cut(s) 30
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HincII GTYRAC 1 cut(s) 113
HindII GTYRAC 1 cut(s) 113
HinfI GANTC 2 cut(s) 274, 286
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 4 cut(s) 124, 199, 291, 330
Hpy8I GTNNAC 1 cut(s) 113
Hpy99I CGWCG 1 cut(s) 111
HpyAV CCTTC 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 1 cut(s) 313
HpyF3I CTNAG 2 cut(s) 61, 257
HpySE526I ACGT 1 cut(s) 115
Hsp92I GRCGYC 1 cut(s) 30
HspAI GCGC 1 cut(s) 30
KasI GGCGCC 1 cut(s) 29
Kzo9I GATC 4 cut(s) 168, 176, 199, 319
LmnI GCTCC 2 cut(s) 200, 333
LweI GCATC 1 cut(s) 303
MaeI CTAG 4 cut(s) 11, 158, 317, 337
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 214
MalI GATC 4 cut(s) 170, 178, 201, 321
MbiI CCGCTC 1 cut(s) 307
MboI GATC 4 cut(s) 168, 176, 199, 319
MflI RGATCY 2 cut(s) 176, 319
MhlI GDGCHC 1 cut(s) 197
Mly113I GGCGCC 1 cut(s) 30
MmeI TCCRAC 1 cut(s) 308
MnlI CCTC 5 cut(s) 86, 114, 261, 262, 324
MspR9I CCNGG 2 cut(s) 46, 81
MvaI CCWGG 2 cut(s) 46, 81
MwoI GCNNNNNNNGC 1 cut(s) 313
NarI GGCGCC 1 cut(s) 30
NdeII GATC 4 cut(s) 168, 176, 199, 319
NlaIV GGNNCC 3 cut(s) 31, 196, 250
PcsI WCGNNNNNNNCGW 1 cut(s) 112
PfeI GAWTC 2 cut(s) 274, 286
PkrI GCNGC 1 cut(s) 29
PluTI GGCGCC 1 cut(s) 33
Psp6I CCWGG 2 cut(s) 44, 79
PspGI CCWGG 2 cut(s) 44, 79
PspN4I GGNNCC 3 cut(s) 31, 196, 250
PspPI GGNCC 1 cut(s) 248
PsuI RGATCY 2 cut(s) 176, 319
RsaI GTAC 2 cut(s) 281, 300
RsaNI GTAC 2 cut(s) 280, 299
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 4 cut(s) 168, 176, 199, 319
Sau96I GGNCC 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 46, 81
SduI GDGCHC 1 cut(s) 197
SetI ASST 5 cut(s) 67, 118, 130, 263, 338
SfaNI GCATC 1 cut(s) 303
SfoI GGCGCC 1 cut(s) 31
SinI GGWCC 1 cut(s) 248
SsiI CCGC 5 cut(s) 27, 96, 174, 271, 307
SspDI GGCGCC 1 cut(s) 29
SspMI CTAG 4 cut(s) 11, 158, 317, 337
StyD4I CCNGG 2 cut(s) 44, 79
TaiI ACGT 1 cut(s) 118
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 2 cut(s) 274, 286
TscAI CASTG 1 cut(s) 210
TspRI CASTG 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 248
XagI CCTNNNNNAGG 1 cut(s) 256
XspI CTAG 4 cut(s) 11, 158, 317, 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.