Rh3DG266600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0015773
Physical Location & Seq
Reverse (-)
26642859 .. 26643107
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG266600.1

Sequence Viewer

Length: 249 bp
ATGGCTTCGCTAGGGCTTGCTTGTGGCGGCGTCAAGTTTCTGGCCCGGGTAGATGACTTCTCAGCTCTTTCCGGTCAGCCTTGGAAGGATGGAGGCGGAGTTCCTCTTCATCAACGTGCTTTTGAACTTGTCGAACTATGGTTTCGACTTTTGTTCCTGGTTATGTTGATATGCGGATCTGCTGTAGCTATGGGCTTCAATCCAGTGGTGGTGGTTACTGGTGGGTTTGGTTTTTGGGATGCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.76

Weight (kDa)

5.53

Isoelectric Point (pI)

26.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 27, 96, 174
AclWI GGATC 1 cut(s) 184
AcyI GRCGYC 1 cut(s) 30
AgsI TTSAA 2 cut(s) 125, 199
AjnI CCWGG 1 cut(s) 156
AloI GAACNNNNNNTCC 2 cut(s) 84, 116
AluBI AGCT 2 cut(s) 65, 188
AluI AGCT 2 cut(s) 65, 188
AlwI GGATC 1 cut(s) 184
Ama87I CYCGRG 1 cut(s) 45
AoxI GGCC 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 43
AsuC2I CCSGG 2 cut(s) 46, 47
AvaI CYCGRG 1 cut(s) 45
BccI CCATC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 158
BcnI CCSGG 2 cut(s) 46, 47
BfaI CTAG 2 cut(s) 11, 247
BfmI CTRYAG 1 cut(s) 183
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
Bme1390I CCNGG 3 cut(s) 46, 47, 158
BmeT110I CYCGRG 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 43
BmrFI CCNGG 3 cut(s) 46, 47, 158
BmsI GCATC 1 cut(s) 229
BpuMI CCSGG 2 cut(s) 46, 47
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 45, 80
BsaWI WCCGGW 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bse1I ACTGG 2 cut(s) 203, 223
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 2 cut(s) 45, 80
BseGI GGATG 2 cut(s) 94, 244
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 2 cut(s) 203, 223
BshFI GGCC 1 cut(s) 44
BsiHKCI CYCGRG 1 cut(s) 45
BsiSI CCGG 2 cut(s) 46, 72
BsnI GGCC 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 45
Bsp143I GATC 1 cut(s) 176
BspACI CCGC 3 cut(s) 27, 96, 174
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 74
BspPI GGATC 1 cut(s) 184
BsrI ACTGG 2 cut(s) 203, 223
BssECI CCNNGG 2 cut(s) 45, 80
BssMI GATC 1 cut(s) 176
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 111
BstACI GRCGYC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 1 cut(s) 61
BstF5I GGATG 2 cut(s) 94, 244
BstKTI GATC 1 cut(s) 179
BstMBI GATC 1 cut(s) 176
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 3 cut(s) 44, 45, 156
BstSFI CTRYAG 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BsuRI GGCC 1 cut(s) 44
BtsCI GGATG 2 cut(s) 94, 244
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 43
Cfr9I CCCGGG 1 cut(s) 45
CseI GACGC 1 cut(s) 19
CviJI RGCY 7 cut(s) 5, 16, 44, 65, 79, 188, 195
CviKI_1 RGCY 7 cut(s) 5, 16, 44, 65, 79, 188, 195
DdeI CTNAG 1 cut(s) 61
DpnI GATC 1 cut(s) 178
DpnII GATC 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
EciI GGCGGA 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 80
FaiI YATR 4 cut(s) 139, 164, 172, 191
Fnu4HI GCNGC 1 cut(s) 28
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 2 cut(s) 11, 247
GluI GCNGC 1 cut(s) 28
HaeIII GGCC 1 cut(s) 44
HapII CCGG 2 cut(s) 46, 72
HgaI GACGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 30
HpaII CCGG 2 cut(s) 46, 72
HpyAV CCTTC 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 115
HpyF3I CTNAG 1 cut(s) 61
HpySE526I ACGT 1 cut(s) 115
Hsp92I GRCGYC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 176
LpnPI CCDG 7 cut(s) 26, 59, 85, 143, 170, 204, 216
LweI GCATC 1 cut(s) 229
MaeI CTAG 2 cut(s) 11, 247
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 214
MalI GATC 1 cut(s) 178
MboI GATC 1 cut(s) 176
MboII GAAGA 1 cut(s) 98
MflI RGATCY 1 cut(s) 176
MnlI CCTC 2 cut(s) 86, 114
MslI CAYNNNNRTG 1 cut(s) 114
MspI CCGG 2 cut(s) 46, 72
MspR9I CCNGG 3 cut(s) 46, 47, 158
MvaI CCWGG 1 cut(s) 158
NciI CCSGG 2 cut(s) 46, 47
NdeII GATC 1 cut(s) 176
PkrI GCNGC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PspPI GGNCC 1 cut(s) 43
PsuI RGATCY 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 114
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 1 cut(s) 176
Sau96I GGNCC 1 cut(s) 43
ScrFI CCNGG 3 cut(s) 46, 47, 158
SetI ASST 3 cut(s) 67, 118, 190
SfaNI GCATC 1 cut(s) 229
SfcI CTRYAG 1 cut(s) 183
SmaI CCCGGG 1 cut(s) 47
SmiMI CAYNNNNRTG 1 cut(s) 114
SsiI CCGC 3 cut(s) 27, 96, 174
SspMI CTAG 2 cut(s) 11, 247
StyD4I CCNGG 3 cut(s) 44, 45, 156
StyI CCWWGG 1 cut(s) 80
TaiI ACGT 1 cut(s) 118
TaqI TCGA 2 cut(s) 132, 145
TauI GCSGC 1 cut(s) 30
TscAI CASTG 1 cut(s) 210
TspDTI ATGAA 1 cut(s) 98
TspMI CCCGGG 1 cut(s) 45
TspRI CASTG 1 cut(s) 210
XmaI CCCGGG 1 cut(s) 45
XspI CTAG 2 cut(s) 11, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.