RLG00000016208

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015773
Physical Location & Seq
Forward (+)
4756031 .. 4757276
1246 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016208

Sequence Viewer

Length: 723 bp
ATGGCTCCGCTAGGGTTTTCTTGTGGCGGCGCAAAGTTTCTGGCCTGGGGAGATTGCTTCTCCCTTCTCTTAGGTCAGCCTGGGAAGGATGGAGGCGGAGTTCCTCTTCGTCAACGTGCTTCTGAATCTGTCAGACTTTGGTTTCGACTTCTTTTCCTGGTCATGCTTGTCTGCAGACTTGTTATGGCTTTGGCCTCCGGTTCGGTGGTGGTTGCTACTGGTGGTTTTGATTGCCAGTTTTGGCGGGTTGGTACGGCTTTGCCGTTCCATCAGGTTGGTGGAGGCTTTATGGTGGTGGTTGCGTACGGTAGCCCATCCACTGGGGTAAAGGATTGGCAGTCTGGGTTGAGTCGGATCATCGAGGCACCTTGTTACTTAGCTTCTGGCGAGGGGTGGAGATCTGGTAGGACGGCTGCCGGTGTTTCTAGTTTCGTTGGCATCGACGTGTCTCTTACGGGAGGTTTCGATAATGAGGGAGGTGTCCCTGTTAGCGGCGGCAGCTTTAACAGAGATTTTGTCAATGACGCTGTGGTGCTATTGGTGGCTTGCGGCAAATTAGATTTGGGCCTTAGGCCTGTTTTACTGCTAGTTTGGTTGTTTTGGATTTGGGCCTTGAGTCTAATTGCTGAGGTGGACGGATTGGAAAAGAAAGAAGGCATGGAAGGCATTCACCTCCTCTTCCAAATGAAGAGTTATAGTAATGGTACATACGTCAGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

25.48

Weight (kDa)

6.71

Isoelectric Point (pI)

34.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 364
AccB7I CCANNNNNTGG 1 cut(s) 320
AciI CCGC 7 cut(s) 8, 27, 96, 244, 492, 495, 549
AclWI GGATC 1 cut(s) 362
AfaI GTAC 3 cut(s) 253, 305, 706
AfiI CCNNNNNNNGG 2 cut(s) 320, 491
AflIII ACRYGT 1 cut(s) 444
AjiI CACGTC 1 cut(s) 445
AjnI CCWGG 3 cut(s) 44, 79, 156
AloI GAACNNNNNNTCC 2 cut(s) 84, 116
AluBI AGCT 2 cut(s) 380, 501
AluI AGCT 2 cut(s) 380, 501
Alw26I GTCTC 1 cut(s) 453
AlwI GGATC 1 cut(s) 362
AlwNI CAGNNNCTG 1 cut(s) 720
AoxI GGCC 5 cut(s) 42, 192, 565, 572, 609
ApeKI GCWGC 2 cut(s) 413, 498
ArsI GACNNNNNNTTYG 2 cut(s) 126, 158
Asp700I GAANNNNTTC 1 cut(s) 666
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 2 cut(s) 565, 609
AsuHPI GGTGA 1 cut(s) 662
AxyI CCTNAGG 1 cut(s) 569
BaeI ACNNNNGTAYC 1 cut(s) 696
BanI GGYRCC 1 cut(s) 364
BbvCI CCTCAGC 1 cut(s) 627
BbvI GCAGC 2 cut(s) 400, 510
BccI CCATC 3 cut(s) 83, 276, 322
BceAI ACGGC 3 cut(s) 247, 270, 426
BciT130I CCWGG 3 cut(s) 46, 81, 158
BcoDI GTCTC 1 cut(s) 453
BfaI CTAG 3 cut(s) 11, 426, 587
BfmI CTRYAG 1 cut(s) 172
BglII AGATCT 1 cut(s) 398
BisI GCNGC 6 cut(s) 28, 414, 493, 496, 499, 550
BlsI GCNGC 6 cut(s) 29, 415, 494, 497, 500, 551
Bme1390I CCNGG 3 cut(s) 46, 81, 158
BmgBI CACGTC 1 cut(s) 445
BmgT120I GGNCC 2 cut(s) 565, 609
BmiI GGNNCC 2 cut(s) 6, 366
BmrFI CCNGG 3 cut(s) 46, 81, 158
BmrI ACTGGG 1 cut(s) 330
BmsI GCATC 1 cut(s) 447
BmuI ACTGGG 1 cut(s) 330
Bpu10I CCTNAGC 1 cut(s) 627
BpuEI CTTGAG 1 cut(s) 634
BsaJI CCNNGG 2 cut(s) 45, 80
BsaWI WCCGGW 1 cut(s) 197
BsaXI ACNNNNNCTCC 4 cut(s) 84, 114, 388, 418
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 491
Bse118I RCCGGY 1 cut(s) 416
Bse1I ACTGG 3 cut(s) 223, 235, 325
Bse21I CCTNAGG 1 cut(s) 569
BseBI CCWGG 3 cut(s) 46, 81, 158
BseDI CCNNGG 2 cut(s) 45, 80
BseGI GGATG 2 cut(s) 94, 314
BseLI CCNNNNNNNGG 2 cut(s) 320, 491
BseMII CTCAG 1 cut(s) 618
BseNI ACTGG 3 cut(s) 223, 235, 325
BseRI GAGGAG 1 cut(s) 665
BseXI GCAGC 2 cut(s) 400, 510
BshFI GGCC 5 cut(s) 44, 194, 567, 574, 611
BshNI GGYRCC 1 cut(s) 364
BsiSI CCGG 2 cut(s) 198, 417
BsiWI CGTACG 1 cut(s) 303
BslFI GGGAC 1 cut(s) 467
BslI CCNNNNNNNGG 2 cut(s) 320, 491
BsmAI GTCTC 1 cut(s) 453
BsmFI GGGAC 1 cut(s) 467
BsmI GAATGC 1 cut(s) 666
BsnI GGCC 5 cut(s) 44, 194, 567, 574, 611
Bsp143I GATC 2 cut(s) 354, 398
BspACI CCGC 7 cut(s) 8, 27, 96, 244, 492, 495, 549
BspANI GGCC 5 cut(s) 44, 194, 567, 574, 611
BspCNI CTCAG 1 cut(s) 619
BspLI GGNNCC 2 cut(s) 6, 366
BspMAI CTGCAG 1 cut(s) 176
BspPI GGATC 1 cut(s) 362
BspT107I GGYRCC 1 cut(s) 364
BsrFI RCCGGY 1 cut(s) 416
BsrI ACTGG 3 cut(s) 223, 235, 325
BssAI RCCGGY 1 cut(s) 416
BssECI CCNNGG 2 cut(s) 45, 80
BssMI GATC 2 cut(s) 354, 398
Bst2UI CCWGG 3 cut(s) 46, 81, 158
Bst4CI ACNGT 1 cut(s) 308
Bst6I CTCTTC 3 cut(s) 111, 683, 683
BstC8I GCNNGC 1 cut(s) 547
BstDEI CTNAG 4 cut(s) 70, 376, 569, 627
BstF5I GGATG 2 cut(s) 94, 314
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 2 cut(s) 357, 401
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 2 cut(s) 354, 398
BstMWI GCNNNNNNNGC 2 cut(s) 498, 663
BstNI CCWGG 3 cut(s) 46, 81, 158
BstSCI CCNGG 3 cut(s) 44, 79, 156
BstSFI CTRYAG 1 cut(s) 172
BstV1I GCAGC 2 cut(s) 400, 510
BstX2I RGATCY 1 cut(s) 398
BstXI CCANNNNNNTGG 1 cut(s) 275
BstYI RGATCY 1 cut(s) 398
Bsu36I CCTNAGG 1 cut(s) 569
BsuRI GGCC 5 cut(s) 44, 194, 567, 574, 611
BtrI CACGTC 1 cut(s) 445
BtsCI GGATG 2 cut(s) 94, 314
BtsIMutI CAGTG 2 cut(s) 318, 721
Cac8I GCNNGC 1 cut(s) 547
CaiI CAGNNNCTG 1 cut(s) 720
CfoI GCGC 1 cut(s) 32
Cfr10I RCCGGY 1 cut(s) 416
Cfr13I GGNCC 2 cut(s) 565, 609
CseI GACGC 1 cut(s) 533
Csp6I GTAC 3 cut(s) 252, 304, 705
CviAII CATG 2 cut(s) 163, 658
CviQI GTAC 3 cut(s) 252, 304, 705
DdeI CTNAG 4 cut(s) 70, 376, 569, 627
DpnI GATC 2 cut(s) 356, 400
DpnII GATC 2 cut(s) 354, 398
Eam1104I CTCTTC 3 cut(s) 111, 683, 683
EarI CTCTTC 3 cut(s) 111, 683, 683
EciI GGCGGA 1 cut(s) 111
Eco147I AGGCCT 1 cut(s) 574
Eco81I CCTNAGG 1 cut(s) 569
EcoRII CCWGG 3 cut(s) 44, 79, 156
FaeI CATG 2 cut(s) 166, 661
FaiI YATR 6 cut(s) 164, 185, 290, 659, 696, 709
FaqI GGGAC 1 cut(s) 467
FatI CATG 2 cut(s) 162, 657
FauI CCCGC 1 cut(s) 237
Fnu4HI GCNGC 6 cut(s) 28, 414, 493, 496, 499, 550
FokI GGATG 2 cut(s) 101, 301
Fsp4HI GCNGC 6 cut(s) 28, 414, 493, 496, 499, 550
FspBI CTAG 3 cut(s) 11, 426, 587
GlaI GCGC 1 cut(s) 31
GluI GCNGC 6 cut(s) 28, 414, 493, 496, 499, 550
HaeIII GGCC 5 cut(s) 44, 194, 567, 574, 611
HapII CCGG 2 cut(s) 198, 417
HgaI GACGC 1 cut(s) 533
HhaI GCGC 1 cut(s) 32
Hin1II CATG 2 cut(s) 166, 661
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HincII GTYRAC 1 cut(s) 113
HindII GTYRAC 1 cut(s) 113
HinfI GANTC 3 cut(s) 125, 349, 616
HpaII CCGG 2 cut(s) 198, 417
HphI GGTGA 1 cut(s) 662
Hpy166II GTNNAC 2 cut(s) 113, 634
Hpy188I TCNGA 3 cut(s) 124, 134, 354
Hpy8I GTNNAC 2 cut(s) 113, 634
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 4 cut(s) 74, 79, 647, 656
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4IV ACGT 3 cut(s) 115, 444, 711
HpyCH4V TGCA 1 cut(s) 174
HpyF10VI GCNNNNNNNGC 2 cut(s) 498, 663
HpyF3I CTNAG 4 cut(s) 70, 376, 569, 627
HpySE526I ACGT 3 cut(s) 115, 444, 711
Hsp92II CATG 2 cut(s) 166, 661
HspAI GCGC 1 cut(s) 30
Kzo9I GATC 2 cut(s) 354, 398
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 2 cut(s) 400, 510
LweI GCATC 1 cut(s) 447
MaeI CTAG 3 cut(s) 11, 426, 587
MaeII ACGT 3 cut(s) 115, 444, 711
MaeIII GTNAC 1 cut(s) 371
MalI GATC 2 cut(s) 356, 400
MboI GATC 2 cut(s) 354, 398
MboII GAAGA 3 cut(s) 98, 670, 700
MflI RGATCY 1 cut(s) 398
MluCI AATT 2 cut(s) 554, 621
MlyI GAGTC 2 cut(s) 358, 625
MmeI TCCRAC 1 cut(s) 332
MroXI GAANNNNTTC 1 cut(s) 666
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 1 cut(s) 443
MspI CCGG 2 cut(s) 198, 417
MspR9I CCNGG 3 cut(s) 46, 81, 158
Mva1269I GAATGC 1 cut(s) 666
MvaI CCWGG 3 cut(s) 46, 81, 158
MwoI GCNNNNNNNGC 2 cut(s) 498, 663
NdeII GATC 2 cut(s) 354, 398
NlaIII CATG 2 cut(s) 166, 661
NlaIV GGNNCC 2 cut(s) 6, 366
PceI AGGCCT 1 cut(s) 574
PcsI WCGNNNNNNNCGW 2 cut(s) 260, 438
PctI GAATGC 1 cut(s) 666
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 1 cut(s) 125
Pfl23II CGTACG 1 cut(s) 303
PflMI CCANNNNNTGG 1 cut(s) 320
PkrI GCNGC 6 cut(s) 29, 415, 494, 497, 500, 551
PleI GAGTC 2 cut(s) 357, 624
PpsI GAGTC 2 cut(s) 357, 624
Psp6I CCWGG 3 cut(s) 44, 79, 156
PspGI CCWGG 3 cut(s) 44, 79, 156
PspLI CGTACG 1 cut(s) 303
PspN4I GGNNCC 2 cut(s) 6, 366
PspPI GGNCC 2 cut(s) 565, 609
PstI CTGCAG 1 cut(s) 176
PstNI CAGNNNCTG 1 cut(s) 720
PsuI RGATCY 1 cut(s) 398
RsaI GTAC 3 cut(s) 253, 305, 706
RsaNI GTAC 3 cut(s) 252, 304, 705
RseI CAYNNNNRTG 1 cut(s) 443
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 6 cut(s) 28, 414, 493, 496, 499, 550
Sau3AI GATC 2 cut(s) 354, 398
Sau96I GGNCC 2 cut(s) 565, 609
SchI GAGTC 2 cut(s) 358, 625
ScrFI CCNGG 3 cut(s) 46, 81, 158
SfaNI GCATC 1 cut(s) 447
SfcI CTRYAG 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 613
SmoI CTYRAG 1 cut(s) 613
Sse9I AATT 2 cut(s) 554, 621
SseBI AGGCCT 1 cut(s) 574
SsiI CCGC 7 cut(s) 8, 27, 96, 244, 492, 495, 549
SspMI CTAG 3 cut(s) 11, 426, 587
StuI AGGCCT 1 cut(s) 574
StyD4I CCNGG 3 cut(s) 44, 79, 156
TaaI ACNGT 1 cut(s) 308
TaiI ACGT 3 cut(s) 118, 447, 714
TaqI TCGA 4 cut(s) 145, 360, 441, 465
TasI AATT 2 cut(s) 554, 621
TauI GCSGC 4 cut(s) 30, 495, 498, 552
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 2 cut(s) 325, 721
TseI GCWGC 2 cut(s) 413, 498
TspDTI ATGAA 1 cut(s) 701
TspGWI ACGGA 1 cut(s) 651
TspRI CASTG 2 cut(s) 325, 721
Van91I CCANNNNNTGG 1 cut(s) 320
XcmI CCANNNNNNNNNTGG 1 cut(s) 275
XmnI GAANNNNTTC 1 cut(s) 666
XspI CTAG 3 cut(s) 11, 426, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.