Rroxscaffold_2G00132860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015773
Physical Location & Seq
Reverse (-)
69896096 .. 69896720
625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00132860.1

Sequence Viewer

Length: 399 bp
ATGGCTATAGCCTCGATCCCGGTAGTGGTGGCTCCTGGTGGTTTTGGTTTGTGGGATGCCGATTGGACCCTATTGCGGGATCCGGAAGTGGGTACAAGAGCGAGCGGTGCTAGACCGTGGCTGGATTTGCTCCCAAAGCCTCGTCTTTGGGTGGACCGGTTTGACGAAGGTCGGACGACGACCAATGGTGTTTGGTTGTCCGATGATGAAGGCGGAAACCGGTCGAGGTCTTCTACTCGTGACGGCGGCGTTGTTCATGAGTGCTTTGGGACATGGTCCGGGATGCGTCGGCTGGGTTGGGAGGCTGGAGTTGTGATGGTGGCAGGTCGCAAAGTTCACATTCTCGAGGGTTCATTTTACTATTTGCTTCGAGAGGATGTTGATCTTTGTTTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.66

Weight (kDa)

5.65

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 314
AccBSI CCGCTC 1 cut(s) 105
AccIII TCCGGA 1 cut(s) 82
AciI CCGC 4 cut(s) 76, 105, 213, 246
AclWI GGATC 3 cut(s) 10, 74, 87
AfaI GTAC 1 cut(s) 94
AfiI CCNNNNNNNGG 4 cut(s) 25, 75, 76, 89
AgeI ACCGGT 2 cut(s) 156, 219
AgsI TTSAA 1 cut(s) 394
AjnI CCWGG 1 cut(s) 34
AlwI GGATC 3 cut(s) 10, 74, 87
Ama87I CYCGRG 1 cut(s) 344
Aor13HI TCCGGA 1 cut(s) 82
AsiGI ACCGGT 2 cut(s) 156, 219
AspS9I GGNCC 3 cut(s) 66, 154, 276
AsuC2I CCSGG 2 cut(s) 20, 280
AvaI CYCGRG 1 cut(s) 344
AvaII GGWCC 3 cut(s) 66, 154, 276
BamHI GGATCC 1 cut(s) 79
BauI CACGAG 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 222
BccI CCATC 1 cut(s) 310
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 1 cut(s) 36
BcnI CCSGG 2 cut(s) 20, 280
BfaI CTAG 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 6
BfuAI ACCTGC 1 cut(s) 314
BisI GCNGC 1 cut(s) 247
BlsI GCNGC 1 cut(s) 248
Bme1390I CCNGG 3 cut(s) 20, 36, 280
Bme18I GGWCC 3 cut(s) 66, 154, 276
BmeT110I CYCGRG 1 cut(s) 344
BmgT120I GGNCC 3 cut(s) 66, 154, 276
BmiI GGNNCC 3 cut(s) 33, 68, 81
BmrFI CCNGG 3 cut(s) 20, 36, 280
BmsI GCATC 2 cut(s) 46, 273
BoxI GACNNNNGTC 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 327
BpuMI CCSGG 2 cut(s) 20, 280
BsaBI GATNNNNATC 1 cut(s) 381
BsaJI CCNNGG 1 cut(s) 116
BsaWI WCCGGW 3 cut(s) 82, 156, 219
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 75, 76, 89
Bse118I RCCGGY 2 cut(s) 156, 219
Bse8I GATNNNNATC 1 cut(s) 381
BseAI TCCGGA 1 cut(s) 82
BseBI CCWGG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 116
BseGI GGATG 3 cut(s) 61, 288, 382
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 4 cut(s) 25, 75, 76, 89
BseYI CCCAGC 1 cut(s) 292
Bsh1285I CGRYCG 1 cut(s) 224
BshTI ACCGGT 2 cut(s) 156, 219
BsiEI CGRYCG 1 cut(s) 224
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 5 cut(s) 20, 83, 157, 220, 279
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 4 cut(s) 25, 75, 76, 89
BsmFI GGGAC 1 cut(s) 283
BsoBI CYCGRG 1 cut(s) 344
Bsp13I TCCGGA 1 cut(s) 82
Bsp143I GATC 3 cut(s) 15, 79, 382
BspACI CCGC 4 cut(s) 76, 105, 213, 246
BspEI TCCGGA 1 cut(s) 82
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 3 cut(s) 33, 68, 81
BspMI ACCTGC 1 cut(s) 314
BspPI GGATC 3 cut(s) 10, 74, 87
BsrBI CCGCTC 1 cut(s) 105
BsrFI RCCGGY 2 cut(s) 156, 219
BssAI RCCGGY 2 cut(s) 156, 219
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 3 cut(s) 15, 79, 382
BssSI CACGAG 1 cut(s) 237
Bst2BI CACGAG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 103
BstDSI CCRYGG 1 cut(s) 116
BstF5I GGATG 3 cut(s) 61, 288, 382
BstKTI GATC 3 cut(s) 18, 82, 385
BstMBI GATC 3 cut(s) 15, 79, 382
BstMCI CGRYCG 1 cut(s) 224
BstMWI GCNNNNNNNGC 3 cut(s) 107, 127, 136
BstNI CCWGG 1 cut(s) 36
BstPAI GACNNNNGTC 1 cut(s) 168
BstSCI CCNGG 3 cut(s) 18, 34, 278
BstSFI CTRYAG 1 cut(s) 6
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BtgI CCRYGG 1 cut(s) 116
BtsCI GGATG 3 cut(s) 61, 288, 382
BveI ACCTGC 1 cut(s) 314
Cac8I GCNNGC 1 cut(s) 103
CciI TCATGA 1 cut(s) 256
Cfr10I RCCGGY 2 cut(s) 156, 219
Cfr13I GGNCC 3 cut(s) 66, 154, 276
CseI GACGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 93
CspAI ACCGGT 2 cut(s) 156, 219
CviAII CATG 2 cut(s) 257, 273
CviJI RGCY 7 cut(s) 5, 11, 32, 121, 139, 292, 305
CviKI_1 RGCY 7 cut(s) 5, 11, 32, 121, 139, 292, 305
CviQI GTAC 1 cut(s) 93
DpnI GATC 3 cut(s) 17, 81, 384
DpnII GATC 3 cut(s) 15, 79, 382
EciI GGCGGA 1 cut(s) 228
Eco47I GGWCC 3 cut(s) 66, 154, 276
Eco88I CYCGRG 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 34
FaeI CATG 2 cut(s) 260, 276
FaiI YATR 3 cut(s) 8, 258, 274
FaqI GGGAC 1 cut(s) 283
FatI CATG 2 cut(s) 256, 272
FauI CCCGC 1 cut(s) 69
Fnu4HI GCNGC 1 cut(s) 247
FokI GGATG 3 cut(s) 68, 295, 389
Fsp4HI GCNGC 1 cut(s) 247
FspBI CTAG 1 cut(s) 111
GluI GCNGC 1 cut(s) 247
GsaI CCCAGC 1 cut(s) 296
GsuI CTGGAG 1 cut(s) 327
HapII CCGG 5 cut(s) 20, 83, 157, 220, 279
HgaI GACGC 1 cut(s) 275
Hin1II CATG 2 cut(s) 260, 276
HpaII CCGG 5 cut(s) 20, 83, 157, 220, 279
Hpy166II GTNNAC 2 cut(s) 154, 337
Hpy188I TCNGA 2 cut(s) 174, 202
Hpy188III TCNNGA 5 cut(s) 83, 239, 257, 344, 371
Hpy8I GTNNAC 2 cut(s) 154, 337
Hpy99I CGWCG 2 cut(s) 181, 291
HpyAV CCTTC 2 cut(s) 161, 203
HpyCH4III ACNGT 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 127, 136
Hsp92II CATG 2 cut(s) 260, 276
Kpn2I TCCGGA 1 cut(s) 82
Kzo9I GATC 3 cut(s) 15, 79, 382
LmnI GCTCC 2 cut(s) 37, 135
LweI GCATC 2 cut(s) 46, 273
MaeI CTAG 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 239
MalI GATC 3 cut(s) 17, 81, 384
MbiI CCGCTC 1 cut(s) 105
MboI GATC 3 cut(s) 15, 79, 382
MboII GAAGA 1 cut(s) 222
MflI RGATCY 1 cut(s) 79
MmeI TCCRAC 1 cut(s) 152
MnlI CCTC 6 cut(s) 22, 150, 219, 295, 340, 367
MroI TCCGGA 1 cut(s) 82
MspI CCGG 5 cut(s) 20, 83, 157, 220, 279
MspR9I CCNGG 3 cut(s) 20, 36, 280
MvaI CCWGG 1 cut(s) 36
MwoI GCNNNNNNNGC 3 cut(s) 107, 127, 136
NciI CCSGG 2 cut(s) 20, 280
NdeII GATC 3 cut(s) 15, 79, 382
NlaIII CATG 2 cut(s) 260, 276
NlaIV GGNNCC 3 cut(s) 33, 68, 81
NmuCI GTSAC 1 cut(s) 239
PaeR7I CTCGAG 1 cut(s) 344
PagI TCATGA 1 cut(s) 256
PflFI GACNNNGTC 1 cut(s) 274
PfoI TCCNGGA 1 cut(s) 278
PinAI ACCGGT 2 cut(s) 156, 219
PkrI GCNGC 1 cut(s) 248
PshAI GACNNNNGTC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 34
PspFI CCCAGC 1 cut(s) 292
PspGI CCWGG 1 cut(s) 34
PspN4I GGNNCC 3 cut(s) 33, 68, 81
PspPI GGNCC 3 cut(s) 66, 154, 276
PsuI RGATCY 1 cut(s) 79
PsyI GACNNNGTC 1 cut(s) 274
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
SatI GCNGC 1 cut(s) 247
Sau3AI GATC 3 cut(s) 15, 79, 382
Sau96I GGNCC 3 cut(s) 66, 154, 276
ScrFI CCNGG 3 cut(s) 20, 36, 280
SetI ASST 3 cut(s) 172, 230, 328
SfaNI GCATC 2 cut(s) 46, 273
SfcI CTRYAG 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 344
SinI GGWCC 3 cut(s) 66, 154, 276
SlaI CTCGAG 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
SsiI CCGC 4 cut(s) 76, 105, 213, 246
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 3 cut(s) 18, 34, 278
TaaI ACNGT 1 cut(s) 117
TaqI TCGA 4 cut(s) 14, 224, 345, 370
TauI GCSGC 1 cut(s) 249
TseFI GTSAC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 3 cut(s) 222, 245, 342
Tth111I GACNNNGTC 1 cut(s) 274
VpaK11BI GGWCC 3 cut(s) 66, 154, 276
XhoI CTCGAG 1 cut(s) 344
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.