RLG00000028146

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0015773
Physical Location & Seq
Reverse (-)
19413524 .. 19415385
1862 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028146

Sequence Viewer

Length: 465 bp
ATGGGATCATGGCTGCCCAACATCGATTTAAGGCCCAGATTGCTCACTTTTGCTCTCCGTCTTGGTTTATCGACCCGAGAGGAGGCGGTGACACCGGCGGAGGTGAAGCTAGCGGTGGTGTTGCCGGAGGCAGTGGTGGTGATGACGGAGGTCCTCCTAGTGCTGAAGTTTGTTTGTTCCATTGGTGGCTACGGTTATGTTTGGGCCCAAGGTAAGATGGCTTCACTAGGGCTTCCTGGTGGGGGCGTCAAGTTTCTGGCCTGGGTAGATTGCTTCTCCTCTCTCTCCGGTCAGCTTGGGAAGGATGGAGGCGAAGTTCCTCTTCGTCAACGTGCTTCTGAACCTGTCGAACTCTGGTTTCGACTTCTTTTCCTAGTCATGTTGATCTGCGAACCTGCTATTGCTATAGCCTCCGATCCAGTTGTGGTGGCTCCTGGTGGTTTTGGTTTGTGGGATGCCGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.51

Weight (kDa)

4.97

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 403
AciI CCGC 3 cut(s) 86, 98, 113
AclWI GGATC 2 cut(s) 13, 410
AcuI CTGAAG 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 246
AfiI CCNNNNNNNGG 2 cut(s) 82, 242
AjnI CCWGG 3 cut(s) 235, 260, 433
AloI GAACNNNNNNTCC 2 cut(s) 300, 332
AluBI AGCT 2 cut(s) 109, 295
AluI AGCT 2 cut(s) 109, 295
AlwI GGATC 2 cut(s) 13, 410
Ama87I CYCGRG 1 cut(s) 75
AoxI GGCC 3 cut(s) 32, 204, 258
ApaI GGGCCC 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 13
AspS9I GGNCC 4 cut(s) 33, 151, 204, 205
AsuHPI GGTGA 3 cut(s) 100, 115, 151
AsuNHI GCTAGC 1 cut(s) 109
AvaI CYCGRG 1 cut(s) 75
AvaII GGWCC 1 cut(s) 151
BaeGI GKGCMC 1 cut(s) 208
BanII GRGCYC 1 cut(s) 208
BarI GAAGNNNNNNTAC 2 cut(s) 205, 237
BccI CCATC 2 cut(s) 211, 299
BciT130I CCWGG 3 cut(s) 237, 262, 435
BfaI CTAG 5 cut(s) 110, 158, 227, 374, 463
BfmI CTRYAG 1 cut(s) 405
BfuAI ACCTGC 1 cut(s) 403
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
Bme1390I CCNGG 3 cut(s) 237, 262, 435
Bme18I GGWCC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 75
BmgT120I GGNCC 4 cut(s) 33, 151, 204, 205
BmiI GGNNCC 2 cut(s) 206, 432
BmrFI CCNGG 3 cut(s) 237, 262, 435
BmsI GCATC 1 cut(s) 445
BmtI GCTAGC 1 cut(s) 113
BoxI GACNNNNGTC 1 cut(s) 149
Bsa29I ATCGAT 1 cut(s) 24
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 2 cut(s) 208, 261
BsaWI WCCGGW 1 cut(s) 287
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 242
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 419
BseBI CCWGG 3 cut(s) 237, 262, 435
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 208, 261
BseGI GGATG 2 cut(s) 310, 460
BseLI CCNNNNNNNGG 2 cut(s) 82, 242
BseNI ACTGG 1 cut(s) 419
BseRI GAGGAG 2 cut(s) 95, 268
BseSI GKGCMC 1 cut(s) 208
BshFI GGCC 3 cut(s) 34, 206, 260
BshVI ATCGAT 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 75
BsiSI CCGG 3 cut(s) 95, 125, 288
BslI CCNNNNNNNGG 2 cut(s) 82, 242
BsnI GGCC 3 cut(s) 34, 206, 260
BsoBI CYCGRG 1 cut(s) 75
Bsp120I GGGCCC 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 3 cut(s) 5, 384, 415
BspACI CCGC 3 cut(s) 86, 98, 113
BspANI GGCC 3 cut(s) 34, 206, 260
BspDI ATCGAT 1 cut(s) 24
BspLI GGNNCC 2 cut(s) 206, 432
BspMI ACCTGC 1 cut(s) 403
BspOI GCTAGC 1 cut(s) 113
BspPI GGATC 2 cut(s) 13, 410
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 1 cut(s) 419
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 2 cut(s) 208, 261
BssMI GATC 3 cut(s) 5, 384, 415
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 208
Bst2UI CCWGG 3 cut(s) 237, 262, 435
Bst4CI ACNGT 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 327
BstACI GRCGYC 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 111
BstF5I GGATG 2 cut(s) 310, 460
BstKTI GATC 3 cut(s) 8, 387, 418
BstMBI GATC 3 cut(s) 5, 384, 415
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 3 cut(s) 237, 262, 435
BstPAI GACNNNNGTC 1 cut(s) 149
BstSCI CCNGG 3 cut(s) 235, 260, 433
BstSFI CTRYAG 1 cut(s) 405
BstSLI GKGCMC 1 cut(s) 208
Bsu15I ATCGAT 1 cut(s) 24
BsuRI GGCC 3 cut(s) 34, 206, 260
BsuTUI ATCGAT 1 cut(s) 24
BtsCI GGATG 2 cut(s) 310, 460
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 111
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 4 cut(s) 33, 151, 204, 205
ClaI ATCGAT 1 cut(s) 24
CseI GACGC 1 cut(s) 235
CviAII CATG 2 cut(s) 9, 379
DpnI GATC 3 cut(s) 7, 386, 417
DpnII GATC 3 cut(s) 5, 384, 415
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
EciI GGCGGA 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 185
Eco88I CYCGRG 1 cut(s) 75
EcoO109I RGGNCCY 1 cut(s) 151
EcoRII CCWGG 3 cut(s) 235, 260, 433
EcoT14I CCWWGG 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 2 cut(s) 12, 382
FaiI YATR 4 cut(s) 10, 198, 380, 407
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FatI CATG 2 cut(s) 8, 378
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 1 cut(s) 317
FriOI GRGCYC 1 cut(s) 208
Fsp4HI GCNGC 1 cut(s) 14
FspBI CTAG 5 cut(s) 110, 158, 227, 374, 463
GluI GCNGC 1 cut(s) 14
HaeIII GGCC 3 cut(s) 34, 206, 260
HapII CCGG 3 cut(s) 95, 125, 288
HgaI GACGC 1 cut(s) 235
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 2 cut(s) 12, 382
HincII GTYRAC 1 cut(s) 329
HindII GTYRAC 1 cut(s) 329
HpaII CCGG 3 cut(s) 95, 125, 288
HphI GGTGA 3 cut(s) 100, 115, 151
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 2 cut(s) 340, 415
Hpy8I GTNNAC 1 cut(s) 329
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4IV ACGT 1 cut(s) 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpySE526I ACGT 1 cut(s) 331
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 2 cut(s) 12, 382
Kzo9I GATC 3 cut(s) 5, 384, 415
LmnI GCTCC 1 cut(s) 436
LweI GCATC 1 cut(s) 445
MaeI CTAG 5 cut(s) 110, 158, 227, 374, 463
MaeII ACGT 1 cut(s) 331
MaeIII GTNAC 1 cut(s) 88
MalI GATC 3 cut(s) 7, 386, 417
MboI GATC 3 cut(s) 5, 384, 415
MboII GAAGA 1 cut(s) 314
MhlI GDGCHC 1 cut(s) 208
MseI TTAA 1 cut(s) 29
MspI CCGG 3 cut(s) 95, 125, 288
MspR9I CCNGG 3 cut(s) 237, 262, 435
MvaI CCWGG 3 cut(s) 237, 262, 435
MwoI GCNNNNNNNGC 1 cut(s) 40
NdeII GATC 3 cut(s) 5, 384, 415
NheI GCTAGC 1 cut(s) 109
NlaIII CATG 2 cut(s) 12, 382
NlaIV GGNNCC 2 cut(s) 206, 432
NmuCI GTSAC 1 cut(s) 88
PkrI GCNGC 1 cut(s) 15
PpuMI RGGWCCY 1 cut(s) 151
PshAI GACNNNNGTC 1 cut(s) 149
Psp5II RGGWCCY 1 cut(s) 151
Psp6I CCWGG 3 cut(s) 235, 260, 433
PspGI CCWGG 3 cut(s) 235, 260, 433
PspN4I GGNNCC 2 cut(s) 206, 432
PspOMI GGGCCC 1 cut(s) 204
PspPI GGNCC 4 cut(s) 33, 151, 204, 205
PspPPI RGGWCCY 1 cut(s) 151
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 3 cut(s) 5, 384, 415
Sau96I GGNCC 4 cut(s) 33, 151, 204, 205
ScrFI CCNGG 3 cut(s) 237, 262, 435
SduI GDGCHC 1 cut(s) 208
SetI ASST 8 cut(s) 105, 111, 153, 214, 297, 334, 346, 397
SfaNI GCATC 1 cut(s) 445
SfcI CTRYAG 1 cut(s) 405
SgrAI CRCCGGYG 1 cut(s) 94
SinI GGWCC 1 cut(s) 151
SsiI CCGC 3 cut(s) 86, 98, 113
SspMI CTAG 5 cut(s) 110, 158, 227, 374, 463
StyD4I CCNGG 3 cut(s) 235, 260, 433
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 194
TaiI ACGT 1 cut(s) 334
TaqI TCGA 4 cut(s) 24, 71, 348, 361
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 88
TspGWI ACGGA 2 cut(s) 47, 161
TspRI CASTG 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 151
XspI CTAG 5 cut(s) 110, 158, 227, 374, 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.