Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0015773

Physical Location & Seq

Genomic Coordinates Reverse (-)

26228510 .. 26229497

Gene Structure 988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG126200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCTGAGTTGCATATCTGCTATGGCTATGGTCTATGTTCCTCTAGTGGTCGGTACTTGTGGTTTTAATGGCAAATTTTGGCTTTTTGATCGTCAAATTGGTGCGGCTTTGCTGTCCCTTTTGGATGGCAGTGATTCCATAGGGAATGATGCGCAAAGCAATGCTTTTAGTAGGGTTGAGGATTGGCGGCCTAGGTTTACAAGGATTATCGAGCACTTGGATACGTGGAATCCGGCGAGGGGTGGAGGCCCAGTAGTGATGGATACGGGTTGGCAGATGCTAGTGGTTCTGGCTTCTCTGGTGTTGACATCTTTGTGGCTAATGGATTCATTGGTGAGGGTGGCGTCTGTGTTGGTGTTTTTGACAGCGACCAACGTGGTAGGGAGGACGACGATGATGGGCTTGTTTTGGGTAGTAGAGACGTTGGCGGCGTTGCGGGGAAATCCAGTTAATTGCTATGGTTTCCGGAAGGTTGAACTGTTGGGCTCTATTGCAGACTTTGGGCTTAGGCTGTACTGGGCTATTTTGGGCTTTTATTATTTTATTTTTTTGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

20.55

Weight (kDa)

6.54

Isoelectric Point (pI)

24.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015773)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014164 RLG00000016208 RLG00000028146
rosa_multiflora	Rmu_sc0001353.1_g000028
rosa_roxburghii	Rroxscaffold_2G00122870 Rroxscaffold_2G00132860
rosa_samantha	Rh1DG126200 Rh2BG060200 Rh2BG466900 Rh2CG062100 Rh3DG266600 Rh4DG068600 Rh5BG128900 Rh5DG075800 Rh7BG335500
rosa_wichuraiana	Rw1G009780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	153
AccIII	TCCGGA	1 cut(s)	465
AciI	CCGC	4 cut(s)	104, 187, 428, 436
AcsI	RAATTY	1 cut(s)	74
AcyI	GRCGYC	1 cut(s)	344
AfaI	GTAC	2 cut(s)	55, 515
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	476
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	413
Aor13HI	TCCGGA	1 cut(s)	465
AoxI	GGCC	2 cut(s)	188, 247
ApoI	RAATTY	1 cut(s)	74
AspA2I	CCTAGG	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	346
AvrII	CCTAGG	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	216
BccI	CCATC	3 cut(s)	119, 253, 391
BciVI	GTATCC	2 cut(s)	214, 256
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	3 cut(s)	44, 192, 281
BfuI	GTATCC	2 cut(s)	214, 256
BisI	GCNGC	3 cut(s)	105, 188, 429
BlnI	CCTAGG	1 cut(s)	191
BlsI	GCNGC	3 cut(s)	106, 189, 430
BmgT120I	GGNCC	1 cut(s)	248
BmrI	ACTGGG	2 cut(s)	245, 526
BmsI	GCATC	2 cut(s)	139, 267
BmuI	ACTGGG	2 cut(s)	245, 526
Bpu10I	CCTNAGC	1 cut(s)	506
BsaAI	YACGTR	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	191
BsaWI	WCCGGW	1 cut(s)	465
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	3 cut(s)	251, 446, 521
Bse3DI	GCAATG	1 cut(s)	166
BseAI	TCCGGA	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	191
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMI	GCAATG	1 cut(s)	166
BseNI	ACTGG	3 cut(s)	251, 446, 521
BshFI	GGCC	2 cut(s)	190, 249
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	2 cut(s)	233, 466
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	413
BsmBI	CGTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	2 cut(s)	190, 249
Bsp1286I	GDGCHC	2 cut(s)	216, 488
Bsp13I	TCCGGA	1 cut(s)	465
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	4 cut(s)	104, 187, 428, 436
BspANI	GGCC	2 cut(s)	190, 249
BspEI	TCCGGA	1 cut(s)	465
BsrDI	GCAATG	1 cut(s)	166
BsrI	ACTGG	3 cut(s)	251, 446, 521
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	1 cut(s)	88
BssNI	GRCGYC	1 cut(s)	344
BssT1I	CCWWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	480
BstACI	GRCGYC	1 cut(s)	344
BstBAI	YACGTR	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	5, 506
BstF5I	GGATG	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	1 cut(s)	88
BsuI	GTATCC	2 cut(s)	214, 256
BsuRI	GGCC	2 cut(s)	190, 249
BtsCI	GGATG	1 cut(s)	130
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	136
CfoI	GCGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	248
CseI	GACGC	1 cut(s)	333
Csp6I	GTAC	2 cut(s)	54, 514
CviQI	GTAC	2 cut(s)	54, 514
DdeI	CTNAG	2 cut(s)	5, 506
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	488
EcoT14I	CCWWGG	1 cut(s)	191
EcoT38I	GRGCYC	1 cut(s)	488
ErhI	CCWWGG	1 cut(s)	191
Esp3I	CGTCTC	1 cut(s)	413
FaiI	YATR	6 cut(s)	14, 23, 29, 36, 140, 459
FalI	AAGNNNNNCTT	2 cut(s)	148, 180
FaqI	GGGAC	1 cut(s)	100
FauI	CCCGC	1 cut(s)	429
Fnu4HI	GCNGC	3 cut(s)	105, 188, 429
FokI	GGATG	1 cut(s)	137
FriOI	GRGCYC	1 cut(s)	488
Fsp4HI	GCNGC	3 cut(s)	105, 188, 429
FspBI	CTAG	3 cut(s)	44, 192, 281
FspI	TGCGCA	1 cut(s)	153
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	3 cut(s)	105, 188, 429
HaeIII	GGCC	2 cut(s)	190, 249
HapII	CCGG	2 cut(s)	233, 466
HgaI	GACGC	1 cut(s)	333
HhaI	GCGC	1 cut(s)	154
Hin1I	GRCGYC	1 cut(s)	344
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	306
HindII	GTYRAC	1 cut(s)	306
HinfI	GANTC	3 cut(s)	134, 229, 326
HpaII	CCGG	2 cut(s)	233, 466
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	2 cut(s)	198, 306
Hpy188III	TCNNGA	1 cut(s)	466
Hpy8I	GTNNAC	2 cut(s)	198, 306
Hpy99I	CGWCG	1 cut(s)	394
HpyAV	CCTTC	1 cut(s)	463
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4IV	ACGT	3 cut(s)	224, 375, 422
HpyCH4V	TGCA	2 cut(s)	12, 494
HpyF3I	CTNAG	2 cut(s)	5, 506
HpySE526I	ACGT	3 cut(s)	224, 375, 422
Hsp92I	GRCGYC	1 cut(s)	344
HspAI	GCGC	1 cut(s)	152
Kpn2I	TCCGGA	1 cut(s)	465
Kzo9I	GATC	1 cut(s)	88
LpnPI	CCDG	7 cut(s)	246, 264, 275, 284, 459, 479, 502
LweI	GCATC	2 cut(s)	139, 267
MaeI	CTAG	3 cut(s)	44, 192, 281
MaeII	ACGT	3 cut(s)	224, 375, 422
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MhlI	GDGCHC	2 cut(s)	216, 488
MluCI	AATT	3 cut(s)	74, 96, 451
MnlI	CCTC	6 cut(s)	51, 172, 231, 239, 330, 378
MroI	TCCGGA	1 cut(s)	465
MseI	TTAA	3 cut(s)	66, 450, 556
MslI	CAYNNNNRTG	1 cut(s)	313
MspI	CCGG	2 cut(s)	233, 466
NdeII	GATC	1 cut(s)	88
NsbI	TGCGCA	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	1 cut(s)	428
PfeI	GAWTC	3 cut(s)	134, 229, 326
PkrI	GCNGC	3 cut(s)	106, 189, 430
Ppu21I	YACGTR	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	248
RsaI	GTAC	2 cut(s)	55, 515
RsaNI	GTAC	2 cut(s)	54, 514
RseI	CAYNNNNRTG	1 cut(s)	313
SaqAI	TTAA	3 cut(s)	66, 450, 556
SatI	GCNGC	3 cut(s)	105, 188, 429
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	1 cut(s)	248
SduI	GDGCHC	2 cut(s)	216, 488
SetI	ASST	5 cut(s)	197, 227, 378, 425, 474
SfaNI	GCATC	2 cut(s)	139, 267
SmiMI	CAYNNNNRTG	1 cut(s)	313
Sse9I	AATT	3 cut(s)	74, 96, 451
SsiI	CCGC	4 cut(s)	104, 187, 428, 436
SspMI	CTAG	3 cut(s)	44, 192, 281
StyI	CCWWGG	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	480
TaiI	ACGT	3 cut(s)	227, 378, 425
TaqI	TCGA	1 cut(s)	210
TasI	AATT	3 cut(s)	74, 96, 451
TatI	WGTACW	1 cut(s)	513
TauI	GCSGC	3 cut(s)	107, 190, 431
TfiI	GAWTC	3 cut(s)	134, 229, 326
Tru1I	TTAA	3 cut(s)	66, 450, 556
Tru9I	TTAA	3 cut(s)	66, 450, 556
TscAI	CASTG	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	318
TspRI	CASTG	1 cut(s)	136
XapI	RAATTY	1 cut(s)	74
XmaJI	CCTAGG	1 cut(s)	191
XspI	CTAG	3 cut(s)	44, 192, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.