Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013774

Physical Location & Seq

Genomic Coordinates Reverse (-)

19822270 .. 19824634

Gene Structure 2365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017683

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTGGTTGGCAGCGCTGAGTGATGATGGTGGTGGTGTTCCTCATGGCGGCAGCGGTGCTGCTGTGTTTTACTGTCAGCAACTTGGCACAGTGCGACAAAGGAGTCTGAGGGTGGCTGGTGGTGTGTGGTGGTTGGGTCTAATCCGGTCTATGGCGGCGGCTGTGTTTTGGGCTGTCTGGCCCCATGGTGCTCCTCGATGGGTTCCAAGATCGGCAATCTTCGTGGGCTGGTGGTGGATCCGAGCTCCAGGAAGCGACAATTACCCAGTGAGGACGAAAGCCTTGGATGGTGATGGAGATGGTGTACTCCGACGGTGGCCTGACTCAGTGTGGCGGCGTCGGGATGGTGGTCTGGGTGCCCTGAGAGCTTCTTCAAGGGCCTGGGCATGGTCTAATTTTATGGTGTCATGGGCTGCTATAGGGCCTGGTGGTTCTGGGTGGGCTGTGTTGGTTAGGTCGTTCACCTTTGGGCCCGTATTTGGGATCCAGGTGGATTGGGGCCTAAGTGTATTGGGCTATCTATATATTGGAGAATGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

19.7

Weight (kDa)

10.43

Isoelectric Point (pI)

50.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013774)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000017683
rosa_multiflora	Rmu_sc0000965.1_g000004 Rmu_sc0003887.1_g000007 Rmu_sc0003887.1_g000008 Rmu_sc0005246.1_g000004 Rmu_sc0006007.1_g000004 Rmu_sc0006126.1_g000007 Rmu_sc0023546.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021520 Rroxscaffold_1G00045370 Rroxscaffold_3G00229580 Rroxscaffold_6G00412900 Rroxscaffold_6G00417010
rosa_rugosa	Rorug02G0373300
rosa_samantha	Rh5DG503600 Rh6AG135700 Rh6DG492500 Rh7DG482400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	102
AccB1I	GGYRCC	1 cut(s)	356
AciI	CCGC	5 cut(s)	48, 54, 155, 158, 334
AclWI	GGATC	4 cut(s)	232, 245, 478, 491
AcyI	GRCGYC	1 cut(s)	337
AfaI	GTAC	1 cut(s)	306
AfeI	AGCGCT	1 cut(s)	15
AfiI	CCNNNNNNNGG	5 cut(s)	47, 151, 387, 479, 480
AgsI	TTSAA	1 cut(s)	375
AjnI	CCWGG	4 cut(s)	247, 380, 424, 486
AluBI	AGCT	2 cut(s)	245, 368
AluI	AGCT	2 cut(s)	245, 368
Alw21I	GWGCWC	2 cut(s)	193, 247
AlwI	GGATC	4 cut(s)	232, 245, 478, 491
Aor51HI	AGCGCT	1 cut(s)	15
AoxI	GGCC	6 cut(s)	179, 317, 378, 422, 470, 499
ApaI	GGGCCC	1 cut(s)	474
ApeKI	GCWGC	4 cut(s)	11, 51, 59, 413
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	6 cut(s)	180, 378, 422, 470, 471, 499
AsuHPI	GGTGA	2 cut(s)	302, 454
BaeGI	GKGCMC	2 cut(s)	361, 474
BamHI	GGATCC	2 cut(s)	237, 483
BanI	GGYRCC	1 cut(s)	356
BanII	GRGCYC	2 cut(s)	247, 474
Bbv12I	GWGCWC	2 cut(s)	193, 247
BbvI	GCAGC	4 cut(s)	23, 46, 63, 400
BccI	CCATC	6 cut(s)	20, 192, 281, 287, 293, 338
BciT130I	CCWGG	4 cut(s)	249, 382, 426, 488
BfmI	CTRYAG	1 cut(s)	417
BfoI	RGCGCY	1 cut(s)	17
BisI	GCNGC	8 cut(s)	12, 49, 52, 60, 156, 159, 335, 414
BlsI	GCNGC	8 cut(s)	13, 50, 53, 61, 157, 160, 336, 415
Bme1390I	CCNGG	4 cut(s)	249, 382, 426, 488
BmgT120I	GGNCC	6 cut(s)	180, 378, 422, 470, 471, 499
BmiI	GGNNCC	7 cut(s)	182, 204, 239, 358, 472, 485, 500
BmrFI	CCNGG	4 cut(s)	249, 382, 426, 488
BmrI	ACTGGG	1 cut(s)	260
BmuI	ACTGGG	1 cut(s)	260
BpmI	CTGGAG	1 cut(s)	231
BsaHI	GRCGYC	1 cut(s)	337
BsaJI	CCNNGG	3 cut(s)	184, 282, 381
BsaWI	WCCGGW	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	5 cut(s)	47, 151, 387, 479, 480
Bse1I	ACTGG	1 cut(s)	266
BseBI	CCWGG	4 cut(s)	249, 382, 426, 488
BseDI	CCNNGG	3 cut(s)	184, 282, 381
BseGI	GGATG	2 cut(s)	292, 349
BseLI	CCNNNNNNNGG	5 cut(s)	47, 151, 387, 479, 480
BseMII	CTCAG	4 cut(s)	8, 98, 339, 353
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	183
BseSI	GKGCMC	2 cut(s)	361, 474
BseXI	GCAGC	4 cut(s)	23, 46, 63, 400
BshFI	GGCC	6 cut(s)	181, 319, 380, 424, 472, 501
BshNI	GGYRCC	1 cut(s)	356
BsiHKAI	GWGCWC	2 cut(s)	193, 247
BsiSI	CCGG	1 cut(s)	145
BslI	CCNNNNNNNGG	5 cut(s)	47, 151, 387, 479, 480
BsmI	GAATGC	1 cut(s)	539
BsnI	GGCC	6 cut(s)	181, 319, 380, 424, 472, 501
Bsp120I	GGGCCC	1 cut(s)	470
Bsp1286I	GDGCHC	4 cut(s)	193, 247, 361, 474
Bsp143I	GATC	3 cut(s)	209, 237, 483
Bsp19I	CCATGG	1 cut(s)	184
BspACI	CCGC	5 cut(s)	48, 54, 155, 158, 334
BspANI	GGCC	6 cut(s)	181, 319, 380, 424, 472, 501
BspCNI	CTCAG	4 cut(s)	9, 99, 338, 354
BspLI	GGNNCC	7 cut(s)	182, 204, 239, 358, 472, 485, 500
BspPI	GGATC	4 cut(s)	232, 245, 478, 491
BspT107I	GGYRCC	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	266
BssECI	CCNNGG	3 cut(s)	184, 282, 381
BssMI	GATC	3 cut(s)	209, 237, 483
BssNI	GRCGYC	1 cut(s)	337
BssT1I	CCWWGG	2 cut(s)	184, 282
Bst2UI	CCWGG	4 cut(s)	249, 382, 426, 488
Bst4CI	ACNGT	3 cut(s)	74, 91, 315
BstACI	GRCGYC	1 cut(s)	337
BstDEI	CTNAG	5 cut(s)	17, 107, 325, 362, 503
BstDSI	CCRYGG	1 cut(s)	184
BstF5I	GGATG	2 cut(s)	292, 349
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	3 cut(s)	212, 240, 486
BstMBI	GATC	3 cut(s)	209, 237, 483
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	4 cut(s)	249, 382, 426, 488
BstSCI	CCNGG	4 cut(s)	247, 380, 424, 486
BstSFI	CTRYAG	1 cut(s)	417
BstSLI	GKGCMC	2 cut(s)	361, 474
BstV1I	GCAGC	4 cut(s)	23, 46, 63, 400
BstX2I	RGATCY	2 cut(s)	237, 483
BstYI	RGATCY	2 cut(s)	237, 483
BsuRI	GGCC	6 cut(s)	181, 319, 380, 424, 472, 501
BtgI	CCRYGG	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	292, 349
BtsIMutI	CAGTG	3 cut(s)	96, 273, 333
CfoI	GCGC	1 cut(s)	16
Cfr13I	GGNCC	6 cut(s)	180, 378, 422, 470, 471, 499
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	305
CspCI	CAANNNNNGTGG	2 cut(s)	204, 239
CviAII	CATG	4 cut(s)	44, 185, 387, 408
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	5 cut(s)	17, 107, 325, 362, 503
DpnI	GATC	3 cut(s)	211, 239, 485
DpnII	GATC	3 cut(s)	209, 237, 483
DrdI	GACNNNNNNGTC	1 cut(s)	102
DseDI	GACNNNNNNGTC	1 cut(s)	102
Ecl136II	GAGCTC	1 cut(s)	245
Eco130I	CCWWGG	2 cut(s)	184, 282
Eco24I	GRGCYC	2 cut(s)	247, 474
Eco47III	AGCGCT	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	245
EcoICRI	GAGCTC	1 cut(s)	245
EcoO109I	RGGNCCY	3 cut(s)	378, 422, 499
EcoRII	CCWGG	4 cut(s)	247, 380, 424, 486
EcoT14I	CCWWGG	2 cut(s)	184, 282
EcoT38I	GRGCYC	2 cut(s)	247, 474
ErhI	CCWWGG	2 cut(s)	184, 282
FaeI	CATG	4 cut(s)	47, 188, 390, 411
FaiI	YATR	9 cut(s)	45, 152, 186, 388, 401, 409, 419, 523, 525
FatI	CATG	4 cut(s)	43, 184, 386, 407
Fnu4HI	GCNGC	8 cut(s)	12, 49, 52, 60, 156, 159, 335, 414
FokI	GGATG	2 cut(s)	299, 356
FriOI	GRGCYC	2 cut(s)	247, 474
Fsp4HI	GCNGC	8 cut(s)	12, 49, 52, 60, 156, 159, 335, 414
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	8 cut(s)	12, 49, 52, 60, 156, 159, 335, 414
GsuI	CTGGAG	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	17
HaeIII	GGCC	6 cut(s)	181, 319, 380, 424, 472, 501
HapII	CCGG	1 cut(s)	145
HgaI	GACGC	1 cut(s)	326
HhaI	GCGC	1 cut(s)	16
Hin1I	GRCGYC	1 cut(s)	337
Hin1II	CATG	4 cut(s)	47, 188, 390, 411
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HinfI	GANTC	2 cut(s)	103, 323
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	2 cut(s)	302, 454
Hpy166II	GTNNAC	2 cut(s)	305, 462
Hpy188I	TCNGA	3 cut(s)	108, 242, 311
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	2 cut(s)	305, 462
Hpy99I	CGWCG	2 cut(s)	315, 342
HpyCH4III	ACNGT	3 cut(s)	74, 91, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	5 cut(s)	17, 107, 325, 362, 503
Hsp92I	GRCGYC	1 cut(s)	337
Hsp92II	CATG	4 cut(s)	47, 188, 390, 411
HspAI	GCGC	1 cut(s)	14
Kzo9I	GATC	3 cut(s)	209, 237, 483
LmnI	GCTCC	2 cut(s)	196, 250
Lsp1109I	GCAGC	4 cut(s)	23, 46, 63, 400
MalI	GATC	3 cut(s)	211, 239, 485
MboI	GATC	3 cut(s)	209, 237, 483
MboII	GAAGA	2 cut(s)	211, 363
MflI	RGATCY	2 cut(s)	237, 483
MhlI	GDGCHC	4 cut(s)	193, 247, 361, 474
MluCI	AATT	2 cut(s)	259, 394
MlyI	GAGTC	2 cut(s)	112, 317
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	4 cut(s)	51, 102, 204, 264
MspA1I	CMGCKG	1 cut(s)	54
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	4 cut(s)	249, 382, 426, 488
Mva1269I	GAATGC	1 cut(s)	539
MvaI	CCWGG	4 cut(s)	249, 382, 426, 488
MwoI	GCNNNNNNNGC	1 cut(s)	365
NcoI	CCATGG	1 cut(s)	184
NdeII	GATC	3 cut(s)	209, 237, 483
NlaIII	CATG	4 cut(s)	47, 188, 390, 411
NlaIV	GGNNCC	7 cut(s)	182, 204, 239, 358, 472, 485, 500
PctI	GAATGC	1 cut(s)	539
PfoI	TCCNGGA	1 cut(s)	247
PkrI	GCNGC	8 cut(s)	13, 50, 53, 61, 157, 160, 336, 415
PleI	GAGTC	2 cut(s)	111, 317
PpsI	GAGTC	2 cut(s)	111, 317
Psp124BI	GAGCTC	1 cut(s)	247
Psp6I	CCWGG	4 cut(s)	247, 380, 424, 486
PspGI	CCWGG	4 cut(s)	247, 380, 424, 486
PspN4I	GGNNCC	7 cut(s)	182, 204, 239, 358, 472, 485, 500
PspOMI	GGGCCC	1 cut(s)	470
PspPI	GGNCC	6 cut(s)	180, 378, 422, 470, 471, 499
PsuI	RGATCY	2 cut(s)	237, 483
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
SacI	GAGCTC	1 cut(s)	247
SatI	GCNGC	8 cut(s)	12, 49, 52, 60, 156, 159, 335, 414
Sau3AI	GATC	3 cut(s)	209, 237, 483
Sau96I	GGNCC	6 cut(s)	180, 378, 422, 470, 471, 499
SchI	GAGTC	2 cut(s)	112, 317
ScrFI	CCNGG	4 cut(s)	249, 382, 426, 488
SduI	GDGCHC	4 cut(s)	193, 247, 361, 474
SetI	ASST	5 cut(s)	247, 370, 458, 467, 492
SfcI	CTRYAG	1 cut(s)	417
Sse9I	AATT	2 cut(s)	259, 394
SsiI	CCGC	5 cut(s)	48, 54, 155, 158, 334
SstI	GAGCTC	1 cut(s)	247
StyD4I	CCNGG	4 cut(s)	247, 380, 424, 486
StyI	CCWWGG	2 cut(s)	184, 282
TaaI	ACNGT	3 cut(s)	74, 91, 315
TaqI	TCGA	1 cut(s)	196
TasI	AATT	2 cut(s)	259, 394
TatI	WGTACW	1 cut(s)	304
TauI	GCSGC	4 cut(s)	51, 158, 161, 337
TscAI	CASTG	3 cut(s)	96, 273, 333
TseI	GCWGC	4 cut(s)	11, 51, 59, 413
TspRI	CASTG	3 cut(s)	96, 273, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.