Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013774

Physical Location & Seq

Genomic Coordinates Reverse (-)

14089623 .. 14091009

Gene Structure 1387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00229580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGACCGCACTACTTCAGCTTTTTGATCGCTCTGGTCTATTGTATGGAGAGCTAGCTAGGTTTGTATTGAGGATATTGGGAGTCAGAACAAAACCCAAGATGGGACCTCCAGCAGGTCCCAATGGGCTTCCATTCTCTGGGCCTGGCGGTGAGAACCGAAACTGCATTGAGGGACCAAAGGCCGCTCCTAGTGGTTCCTGGGATAATGTTTGGGGAAATGATACCACCTACGATGTCGGCGTTCGTGGTCTCGGGTCGGCGAGCCCCGTGGATTCGTGGATCTCCCCCTTTTCAACCTTCGGTTGCTGCACCATAATCTCGTCGGCTTGGCGACGGATTCACCCCTTCGGGTTTTGCCCATGCTCGGTGCTTGTCTCTCGCGGCGATGGTGATGGGCGGCGCCGTGGTCCGGTGGACCCAAACCGGGCATGGGATCCGGGTTCTAGCAAGTGCCGGTTGGGTCCGATCCGGTCTATGGCGACGACGGTGCTTTGGGCCGTCCGGCCTCATGGTGTTCCTCAATCGGTTCCAAGATCGGCGATCTTTGTGGGCGGGTGGTGGATCCGAGTTCTAGGAAGCGACAATTACCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0031090 GO:0031903 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042579 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

21.26

Weight (kDa)

9.97

Isoelectric Point (pI)

55.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013774)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000017683
rosa_multiflora	Rmu_sc0000965.1_g000004 Rmu_sc0003887.1_g000007 Rmu_sc0003887.1_g000008 Rmu_sc0005246.1_g000004 Rmu_sc0006007.1_g000004 Rmu_sc0006126.1_g000007 Rmu_sc0023546.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021520 Rroxscaffold_1G00045370 Rroxscaffold_3G00229580 Rroxscaffold_6G00412900 Rroxscaffold_6G00417010
rosa_rugosa	Rorug02G0373300
rosa_samantha	Rh5DG503600 Rh6AG135700 Rh6DG492500 Rh7DG482400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	104
AccB1I	GGYRCC	1 cut(s)	399
AccB7I	CCANNNNNTGG	1 cut(s)	137
AccBSI	CCGCTC	1 cut(s)	185
AccII	CGCG	1 cut(s)	381
AciI	CCGC	6 cut(s)	6, 147, 183, 381, 397, 552
AclWI	GGATC	6 cut(s)	287, 428, 441, 460, 556, 569
AcyI	GRCGYC	1 cut(s)	400
AfiI	CCNNNNNNNGG	8 cut(s)	101, 113, 137, 364, 409, 424, 430, 475
AgeI	ACCGGT	1 cut(s)	588
AgsI	TTSAA	1 cut(s)	294
AjnI	CCWGG	2 cut(s)	142, 197
AluBI	AGCT	3 cut(s)	19, 52, 56
AluI	AGCT	3 cut(s)	19, 52, 56
Alw26I	GTCTC	2 cut(s)	254, 379
AlwI	GGATC	6 cut(s)	287, 428, 441, 460, 556, 569
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	4 cut(s)	140, 180, 495, 503
ApeKI	GCWGC	1 cut(s)	306
AsiGI	ACCGGT	1 cut(s)	588
AspLEI	GCGC	1 cut(s)	402
AspS9I	GGNCC	8 cut(s)	104, 116, 140, 173, 407, 415, 461, 495
AsuC2I	CCSGG	2 cut(s)	425, 438
AsuHPI	GGTGA	3 cut(s)	161, 332, 401
AsuNHI	GCTAGC	1 cut(s)	52
AvaI	CYCGRG	1 cut(s)	251
AvaII	GGWCC	6 cut(s)	104, 116, 173, 407, 415, 461
BamHI	GGATCC	2 cut(s)	433, 561
BanI	GGYRCC	1 cut(s)	399
BanII	GRGCYC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	3 cut(s)	94, 380, 386
BceAI	ACGGC	2 cut(s)	387, 482
BcgI	CGANNNNNNTGC	2 cut(s)	469, 503
BciT130I	CCWGG	2 cut(s)	144, 199
BcnI	CCSGG	2 cut(s)	425, 438
BcoDI	GTCTC	2 cut(s)	254, 379
BfaI	CTAG	5 cut(s)	53, 57, 189, 444, 572
BfoI	RGCGCY	1 cut(s)	403
BfuAI	ACCTGC	1 cut(s)	104
BisI	GCNGC	4 cut(s)	183, 307, 382, 398
BlsI	GCNGC	4 cut(s)	184, 308, 383, 399
Bme1390I	CCNGG	4 cut(s)	144, 199, 425, 438
Bme18I	GGWCC	6 cut(s)	104, 116, 173, 407, 415, 461
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	8 cut(s)	104, 116, 140, 173, 407, 415, 461, 495
BmrFI	CCNGG	4 cut(s)	144, 199, 425, 438
BmtI	GCTAGC	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	93
BpuMI	CCSGG	2 cut(s)	425, 438
BsaHI	GRCGYC	1 cut(s)	400
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	3 cut(s)	198, 267, 403
BsaWI	WCCGGW	3 cut(s)	409, 468, 588
Bsc4I	CCNNNNNNNGG	8 cut(s)	101, 113, 137, 364, 409, 424, 430, 475
Bse118I	RCCGGY	2 cut(s)	453, 588
BseBI	CCWGG	2 cut(s)	144, 199
BseDI	CCNNGG	3 cut(s)	198, 267, 403
BseLI	CCNNNNNNNGG	8 cut(s)	101, 113, 137, 364, 409, 424, 430, 475
BseXI	GCAGC	1 cut(s)	293
BsgI	GTGCAG	1 cut(s)	292
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	4 cut(s)	142, 182, 497, 505
BshNI	GGYRCC	1 cut(s)	399
BshTI	ACCGGT	1 cut(s)	588
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	7 cut(s)	410, 424, 437, 454, 469, 502, 589
BslFI	GGGAC	3 cut(s)	102, 117, 186
BslI	CCNNNNNNNGG	8 cut(s)	101, 113, 137, 364, 409, 424, 430, 475
BsmAI	GTCTC	2 cut(s)	254, 379
BsmFI	GGGAC	3 cut(s)	102, 117, 186
BsnI	GGCC	4 cut(s)	142, 182, 497, 505
Bso31I	GGTCTC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	7 cut(s)	25, 279, 433, 465, 533, 540, 561
BspACI	CCGC	6 cut(s)	6, 147, 183, 381, 397, 552
BspANI	GGCC	4 cut(s)	142, 182, 497, 505
BspFNI	CGCG	1 cut(s)	381
BspMI	ACCTGC	1 cut(s)	104
BspOI	GCTAGC	1 cut(s)	56
BspPI	GGATC	6 cut(s)	287, 428, 441, 460, 556, 569
BspT107I	GGYRCC	1 cut(s)	399
BspTNI	GGTCTC	1 cut(s)	254
BsrBI	CCGCTC	1 cut(s)	185
BsrFI	RCCGGY	2 cut(s)	453, 588
BssAI	RCCGGY	2 cut(s)	453, 588
BssECI	CCNNGG	3 cut(s)	198, 267, 403
BssMI	GATC	7 cut(s)	25, 279, 433, 465, 533, 540, 561
BssNI	GRCGYC	1 cut(s)	400
Bst2UI	CCWGG	2 cut(s)	144, 199
Bst4CI	ACNGT	1 cut(s)	487
BstACI	GRCGYC	1 cut(s)	400
BstC8I	GCNNGC	2 cut(s)	54, 262
BstDSI	CCRYGG	2 cut(s)	267, 403
BstENI	CCTNNNNNAGG	1 cut(s)	111
BstFNI	CGCG	1 cut(s)	381
BstH2I	RGCGCY	1 cut(s)	403
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	7 cut(s)	28, 282, 436, 468, 536, 543, 564
BstMAI	GTCTC	2 cut(s)	254, 379
BstMBI	GATC	7 cut(s)	25, 279, 433, 465, 533, 540, 561
BstNI	CCWGG	2 cut(s)	144, 199
BstSCI	CCNGG	4 cut(s)	142, 197, 423, 436
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	293
BstX2I	RGATCY	3 cut(s)	279, 433, 561
BstYI	RGATCY	3 cut(s)	279, 433, 561
BsuRI	GGCC	4 cut(s)	142, 182, 497, 505
BtgI	CCRYGG	2 cut(s)	267, 403
BtgZI	GCGATG	1 cut(s)	399
BveI	ACCTGC	1 cut(s)	104
Cac8I	GCNNGC	2 cut(s)	54, 262
CfoI	GCGC	1 cut(s)	402
Cfr10I	RCCGGY	2 cut(s)	453, 588
Cfr13I	GGNCC	8 cut(s)	104, 116, 140, 173, 407, 415, 461, 495
CspAI	ACCGGT	1 cut(s)	588
CviAII	CATG	3 cut(s)	360, 429, 509
DinI	GGCGCC	1 cut(s)	401
DpnI	GATC	7 cut(s)	27, 281, 435, 467, 535, 542, 563
DpnII	GATC	7 cut(s)	25, 279, 433, 465, 533, 540, 561
Eco24I	GRGCYC	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	6 cut(s)	104, 116, 173, 407, 415, 461
Eco88I	CYCGRG	1 cut(s)	251
EcoNI	CCTNNNNNAGG	1 cut(s)	111
EcoO109I	RGGNCCY	2 cut(s)	104, 116
EcoRII	CCWGG	2 cut(s)	142, 197
EcoT38I	GRGCYC	1 cut(s)	266
EgeI	GGCGCC	1 cut(s)	401
EheI	GGCGCC	1 cut(s)	401
FaeI	CATG	3 cut(s)	363, 432, 512
FaiI	YATR	6 cut(s)	45, 314, 361, 430, 476, 510
FaqI	GGGAC	3 cut(s)	102, 117, 186
FatI	CATG	3 cut(s)	359, 428, 508
FauI	CCCGC	1 cut(s)	545
Fnu4HI	GCNGC	4 cut(s)	183, 307, 382, 398
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	4 cut(s)	183, 307, 382, 398
FspBI	CTAG	5 cut(s)	53, 57, 189, 444, 572
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	4 cut(s)	183, 307, 382, 398
GsuI	CTGGAG	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	403
HaeIII	GGCC	4 cut(s)	142, 182, 497, 505
HapII	CCGG	7 cut(s)	410, 424, 437, 454, 469, 502, 589
HhaI	GCGC	1 cut(s)	402
Hin1I	GRCGYC	1 cut(s)	400
Hin1II	CATG	3 cut(s)	363, 432, 512
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HinfI	GANTC	3 cut(s)	81, 272, 337
HpaII	CCGG	7 cut(s)	410, 424, 437, 454, 469, 502, 589
HphI	GGTGA	3 cut(s)	161, 332, 401
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	3 cut(s)	86, 465, 566
Hpy8I	GTNNAC	1 cut(s)	415
Hpy99I	CGWCG	4 cut(s)	325, 336, 484, 487
HpyAV	CCTTC	2 cut(s)	307, 355
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4V	TGCA	2 cut(s)	165, 309
Hsp92I	GRCGYC	1 cut(s)	400
Hsp92II	CATG	3 cut(s)	363, 432, 512
HspAI	GCGC	1 cut(s)	400
KasI	GGCGCC	1 cut(s)	399
Kzo9I	GATC	7 cut(s)	25, 279, 433, 465, 533, 540, 561
LmnI	GCTCC	1 cut(s)	190
Lsp1109I	GCAGC	1 cut(s)	293
MaeI	CTAG	5 cut(s)	53, 57, 189, 444, 572
MalI	GATC	7 cut(s)	27, 281, 435, 467, 535, 542, 563
MbiI	CCGCTC	1 cut(s)	185
MboI	GATC	7 cut(s)	25, 279, 433, 465, 533, 540, 561
MflI	RGATCY	3 cut(s)	279, 433, 561
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	1 cut(s)	583
Mly113I	GGCGCC	1 cut(s)	400
MlyI	GAGTC	1 cut(s)	90
MnlI	CCTC	5 cut(s)	63, 117, 163, 516, 528
MspI	CCGG	7 cut(s)	410, 424, 437, 454, 469, 502, 589
MspR9I	CCNGG	4 cut(s)	144, 199, 425, 438
MvaI	CCWGG	2 cut(s)	144, 199
MvnI	CGCG	1 cut(s)	381
NarI	GGCGCC	1 cut(s)	400
NciI	CCSGG	2 cut(s)	425, 438
NdeII	GATC	7 cut(s)	25, 279, 433, 465, 533, 540, 561
NheI	GCTAGC	1 cut(s)	52
NlaIII	CATG	3 cut(s)	363, 432, 512
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PfeI	GAWTC	2 cut(s)	272, 337
PflMI	CCANNNNNTGG	1 cut(s)	137
PinAI	ACCGGT	1 cut(s)	588
PkrI	GCNGC	4 cut(s)	184, 308, 383, 399
PleI	GAGTC	1 cut(s)	89
PluTI	GGCGCC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	89
PpuMI	RGGWCCY	2 cut(s)	104, 116
Psp5II	RGGWCCY	2 cut(s)	104, 116
Psp6I	CCWGG	2 cut(s)	142, 197
PspGI	CCWGG	2 cut(s)	142, 197
PspPI	GGNCC	8 cut(s)	104, 116, 140, 173, 407, 415, 461, 495
PspPPI	RGGWCCY	2 cut(s)	104, 116
PsuI	RGATCY	3 cut(s)	279, 433, 561
SatI	GCNGC	4 cut(s)	183, 307, 382, 398
Sau3AI	GATC	7 cut(s)	25, 279, 433, 465, 533, 540, 561
Sau96I	GGNCC	8 cut(s)	104, 116, 140, 173, 407, 415, 461, 495
SchI	GAGTC	1 cut(s)	90
ScrFI	CCNGG	4 cut(s)	144, 199, 425, 438
SduI	GDGCHC	1 cut(s)	266
SetI	ASST	8 cut(s)	21, 54, 58, 62, 109, 118, 230, 299
SfoI	GGCGCC	1 cut(s)	401
SinI	GGWCC	6 cut(s)	104, 116, 173, 407, 415, 461
Sse9I	AATT	1 cut(s)	583
SsiI	CCGC	6 cut(s)	6, 147, 183, 381, 397, 552
SspDI	GGCGCC	1 cut(s)	399
SspMI	CTAG	5 cut(s)	53, 57, 189, 444, 572
StyD4I	CCNGG	4 cut(s)	142, 197, 423, 436
TaaI	ACNGT	1 cut(s)	487
TasI	AATT	1 cut(s)	583
TauI	GCSGC	3 cut(s)	185, 384, 400
TfiI	GAWTC	2 cut(s)	272, 337
TseI	GCWGC	1 cut(s)	306
TspGWI	ACGGA	1 cut(s)	349
Van91I	CCANNNNNTGG	1 cut(s)	137
VpaK11BI	GGWCC	6 cut(s)	104, 116, 173, 407, 415, 461
XagI	CCTNNNNNAGG	1 cut(s)	111
XcmI	CCANNNNNNNNNTGG	1 cut(s)	426
XspI	CTAG	5 cut(s)	53, 57, 189, 444, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.