Rh5DG503600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0013774
Physical Location & Seq
Reverse (-)
78788612 .. 78789227
616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG503600.1

Sequence Viewer

Length: 261 bp
ATGGCGGCGACAGTGCTTTGGGCTATCTGGCCTCATGGTGTTCCTCGATCGGTTCCAAGATCGGCGATCTTCGTGGGCTGGTGGTGGTTCCGAGTTCTAGGAAGCGACAATTACCCGGTGAGGACGAAAGCCGCGGAGGGTGATGGAGATGGTGTACTCCGACGGTGGCCTGCCTTAGTGTGGCTGCGTCGGGCTGGTGGTTTGGGTGCCCTGAGTATTCCTTCAGGGGCTTGGGCTTGGTCCGACTCTCTGGTGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.5

Weight (kDa)

11.21

Isoelectric Point (pI)

58.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 206
AccII CGCG 1 cut(s) 134
AciI CCGC 3 cut(s) 5, 132, 134
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 180
Alw21I GWGCWC 1 cut(s) 258
AoxI GGCC 2 cut(s) 29, 167
ApeKI GCWGC 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 240
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 130, 152
AvaII GGWCC 1 cut(s) 240
BaeGI GKGCMC 1 cut(s) 211
BanI GGYRCC 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 171
BccI CCATC 2 cut(s) 137, 143
BcnI CCSGG 1 cut(s) 116
BfaI CTAG 2 cut(s) 98, 259
BisI GCNGC 3 cut(s) 6, 132, 185
BlsI GCNGC 3 cut(s) 7, 133, 186
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 3 cut(s) 54, 89, 208
BmrFI CCNGG 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 203
BseSI GKGCMC 1 cut(s) 211
BseXI GCAGC 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 134
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 2 cut(s) 31, 169
BshNI GGYRCC 1 cut(s) 206
BsiEI CGRYCG 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 180
BsnI GGCC 2 cut(s) 31, 169
Bsp1286I GDGCHC 2 cut(s) 211, 258
Bsp143I GATC 3 cut(s) 47, 59, 66
BspACI CCGC 3 cut(s) 5, 132, 134
BspANI GGCC 2 cut(s) 31, 169
BspCNI CTCAG 1 cut(s) 204
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 3 cut(s) 54, 89, 208
BspT107I GGYRCC 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 3 cut(s) 47, 59, 66
Bst4CI ACNGT 2 cut(s) 13, 165
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 2 cut(s) 175, 212
BstDSI CCRYGG 1 cut(s) 132
BstFNI CGCG 1 cut(s) 134
BstKTI GATC 3 cut(s) 50, 62, 69
BstMBI GATC 3 cut(s) 47, 59, 66
BstMCI CGRYCG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 114
BstSLI GKGCMC 1 cut(s) 211
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 171
BsuRI GGCC 2 cut(s) 31, 169
BtgI CCRYGG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 240
Cfr42I CCGCGG 1 cut(s) 135
CseI GACGC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 155
CviAII CATG 1 cut(s) 35
CviJI RGCY 9 cut(s) 23, 31, 78, 131, 169, 184, 194, 230, 236
CviKI_1 RGCY 9 cut(s) 23, 31, 78, 131, 169, 184, 194, 230, 236
CviQI GTAC 1 cut(s) 155
DdeI CTNAG 2 cut(s) 175, 212
DpnI GATC 3 cut(s) 49, 61, 68
DpnII GATC 3 cut(s) 47, 59, 66
Eco47I GGWCC 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 207
FaeI CATG 1 cut(s) 38
FaiI YATR 1 cut(s) 36
FatI CATG 1 cut(s) 34
Fnu4HI GCNGC 3 cut(s) 6, 132, 185
Fsp4HI GCNGC 3 cut(s) 6, 132, 185
FspBI CTAG 2 cut(s) 98, 259
GluI GCNGC 3 cut(s) 6, 132, 185
HaeIII GGCC 2 cut(s) 31, 169
HapII CCGG 1 cut(s) 116
HgaI GACGC 1 cut(s) 176
Hin1II CATG 1 cut(s) 38
HinfI GANTC 1 cut(s) 245
HpaII CCGG 1 cut(s) 116
HphI GGTGA 2 cut(s) 130, 152
Hpy166II GTNNAC 1 cut(s) 155
Hpy188I TCNGA 3 cut(s) 92, 161, 244
Hpy8I GTNNAC 1 cut(s) 155
Hpy99I CGWCG 2 cut(s) 165, 192
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 2 cut(s) 13, 165
HpyF3I CTNAG 2 cut(s) 175, 212
Hsp92II CATG 1 cut(s) 38
KspI CCGCGG 1 cut(s) 135
Kzo9I GATC 3 cut(s) 47, 59, 66
LpnPI CCDG 8 cut(s) 13, 64, 129, 180, 183, 210, 224, 236
Lsp1109I GCAGC 1 cut(s) 171
MaeI CTAG 2 cut(s) 98, 259
MalI GATC 3 cut(s) 49, 61, 68
MboI GATC 3 cut(s) 47, 59, 66
MboII GAAGA 1 cut(s) 61
MhlI GDGCHC 2 cut(s) 211, 258
MluCI AATT 1 cut(s) 109
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 4 cut(s) 42, 54, 114, 130
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 116
MvnI CGCG 1 cut(s) 134
NciI CCSGG 1 cut(s) 116
NdeII GATC 3 cut(s) 47, 59, 66
NlaIII CATG 1 cut(s) 38
NlaIV GGNNCC 3 cut(s) 54, 89, 208
PkrI GCNGC 3 cut(s) 7, 133, 186
Ple19I CGATCG 1 cut(s) 50
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
PspN4I GGNNCC 3 cut(s) 54, 89, 208
PspPI GGNCC 1 cut(s) 240
PvuI CGATCG 1 cut(s) 50
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
SacII CCGCGG 1 cut(s) 135
SatI GCNGC 3 cut(s) 6, 132, 185
Sau3AI GATC 3 cut(s) 47, 59, 66
Sau96I GGNCC 1 cut(s) 240
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 2 cut(s) 211, 258
Sfr303I CCGCGG 1 cut(s) 135
SgrBI CCGCGG 1 cut(s) 135
SinI GGWCC 1 cut(s) 240
Sse9I AATT 1 cut(s) 109
SsiI CCGC 3 cut(s) 5, 132, 134
SspMI CTAG 2 cut(s) 98, 259
StyD4I CCNGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 13, 165
TaqI TCGA 1 cut(s) 46
TasI AATT 1 cut(s) 109
TatI WGTACW 1 cut(s) 154
TauI GCSGC 2 cut(s) 8, 134
TscAI CASTG 1 cut(s) 18
TseI GCWGC 1 cut(s) 184
TspRI CASTG 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 240
XspI CTAG 2 cut(s) 98, 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.