Rmu_sc0006126.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006126.1
OG0013774
Physical Location & Seq
Reverse (-)
22496 .. 23362
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006126.1_g000007.1.cds

Sequence Viewer

Length: 867 bp
atgagagctctcgctctctcttccttgcggcggctaaccctaggcttttgccatctgttttctttggcttgcgtcaatggtgttcgcggtcattgcctggcgagttctctggactcgtgtacctttcccttccaaccatccggttgctgcatcctcatctcatctgtttgtaggtgggatccttcctctttgggttttccccatgcttgttccacccttttcagagatggtgacggacggcggtgtcatggtttggtggatccaaaccagatgtgggatccgggatctaccaagtggaggcttccggtaagaggtacgatcagactttcttctactatagcaaatcggctccgggttgttgctgaaatcctgcgatggttagagaaactgctttcgatttctctacgtcagtggcgatcctggctgtcatgggtatcgacaaagagattggccctttcgggtgaaggatggaggcgatgttcttgggccctttggttgcaaggggatcctcagtccagtcttggtcaggggatggcagcgacggtgcagtgcagctcggcgtcatggcggtgttgctcaggaggggtgccctgcatttcgggtgtccaaagttgggttggagtgagggtgcccacctgtctgagtgcccatagtagatctatttgggcctatacctgtgtcaagccggctttgccagacctcattgcttcaggccggatttgggatccaagaaacactcaaatccagatcttagatcagagacaattgctctttttgatctggtattggttctggttcttaggagttcgtttgctaatttttgagtttttgacaccctcggttactttcgaactcctggtgagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

32.41

Weight (kDa)

9.53

Isoelectric Point (pI)

54.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 243
AccB1I GGYRCC 2 cut(s) 586, 628
AccII CGCG 1 cut(s) 87
AciI CCGC 5 cut(s) 28, 31, 87, 241, 568
AcuI CTGAAG 1 cut(s) 693
AcyI GRCGYC 1 cut(s) 560
AfaI GTAC 2 cut(s) 121, 316
AfiI CCNNNNNNNGG 6 cut(s) 30, 274, 297, 311, 613, 721
AjnI CCWGG 3 cut(s) 96, 419, 855
AloI GAACNNNNNNTCC 2 cut(s) 463, 495
AluBI AGCT 3 cut(s) 8, 555, 864
AluI AGCT 3 cut(s) 8, 555, 864
Alw21I GWGCWC 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 754
AoxI GGCC 4 cut(s) 450, 486, 666, 712
ApaI GGGCCC 1 cut(s) 490
ApeKI GCWGC 3 cut(s) 147, 536, 552
AspA2I CCTAGG 1 cut(s) 40
AspS9I GGNCC 4 cut(s) 451, 486, 487, 666
AsuC2I CCSGG 2 cut(s) 282, 353
AsuHPI GGTGA 2 cut(s) 242, 473
AsuII TTCGAA 1 cut(s) 849
AvrII CCTAGG 1 cut(s) 40
BaeGI GKGCMC 4 cut(s) 490, 591, 633, 649
BaeI ACNNNNGTAYC 2 cut(s) 103, 136
BamHI GGATCC 5 cut(s) 178, 259, 277, 505, 724
BanI GGYRCC 2 cut(s) 586, 628
BanII GRGCYC 2 cut(s) 10, 490
BauI CACGAG 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 10
BbvI GCAGC 3 cut(s) 134, 548, 564
BccI CCATC 6 cut(s) 60, 145, 221, 369, 462, 526
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 3 cut(s) 98, 421, 857
BcnI CCSGG 2 cut(s) 282, 353
BcoDI GTCTC 1 cut(s) 754
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 336
BglII AGATCT 2 cut(s) 656, 747
BisI GCNGC 5 cut(s) 29, 32, 148, 537, 553
BlnI CCTAGG 1 cut(s) 40
BlsI GCNGC 5 cut(s) 30, 33, 149, 538, 554
Bme1390I CCNGG 5 cut(s) 98, 282, 353, 421, 857
BmgT120I GGNCC 4 cut(s) 451, 486, 487, 666
BmiI GGNNCC 9 cut(s) 180, 261, 279, 350, 488, 507, 588, 630, 726
BmrFI CCNGG 5 cut(s) 98, 282, 353, 421, 857
BmsI GCATC 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 577
Bpu14I TTCGAA 1 cut(s) 849
BpuMI CCSGG 2 cut(s) 282, 353
BsaHI GRCGYC 1 cut(s) 560
BsaJI CCNNGG 2 cut(s) 40, 837
BsaWI WCCGGW 2 cut(s) 140, 304
BsaXI ACNNNNNCTCC 4 cut(s) 463, 493, 612, 642
Bsc4I CCNNNNNNNGG 6 cut(s) 30, 274, 297, 311, 613, 721
Bse118I RCCGGY 1 cut(s) 685
Bse1I ACTGG 1 cut(s) 516
Bse3DI GCAATG 2 cut(s) 91, 702
BseBI CCWGG 3 cut(s) 98, 421, 857
BseDI CCNNGG 2 cut(s) 40, 837
BseGI GGATG 4 cut(s) 137, 150, 473, 537
BseLI CCNNNNNNNGG 6 cut(s) 30, 274, 297, 311, 613, 721
BseMI GCAATG 2 cut(s) 91, 702
BseMII CTCAG 3 cut(s) 524, 591, 632
BseNI ACTGG 1 cut(s) 516
BseSI GKGCMC 4 cut(s) 490, 591, 633, 649
BseXI GCAGC 3 cut(s) 134, 548, 564
BsgI GTGCAG 2 cut(s) 566, 571
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 4 cut(s) 452, 488, 668, 714
BshNI GGYRCC 2 cut(s) 586, 628
BsiHKAI GWGCWC 1 cut(s) 10
BsiSI CCGG 6 cut(s) 141, 281, 305, 352, 686, 715
BslI CCNNNNNNNGG 6 cut(s) 30, 274, 297, 311, 613, 721
BsmAI GTCTC 1 cut(s) 754
BsnI GGCC 4 cut(s) 452, 488, 668, 714
Bsp119I TTCGAA 1 cut(s) 849
Bsp120I GGGCCC 1 cut(s) 486
Bsp1286I GDGCHC 5 cut(s) 10, 490, 591, 633, 649
BspACI CCGC 5 cut(s) 28, 31, 87, 241, 568
BspANI GGCC 4 cut(s) 452, 488, 668, 714
BspCNI CTCAG 3 cut(s) 523, 590, 633
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 9 cut(s) 180, 261, 279, 350, 488, 507, 588, 630, 726
BspT104I TTCGAA 1 cut(s) 849
BspT107I GGYRCC 2 cut(s) 586, 628
BsrDI GCAATG 2 cut(s) 91, 702
BsrFI RCCGGY 1 cut(s) 685
BsrI ACTGG 1 cut(s) 516
BssAI RCCGGY 1 cut(s) 685
BssECI CCNNGG 2 cut(s) 40, 837
BssNI GRCGYC 1 cut(s) 560
BssSI CACGAG 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 40
Bst2BI CACGAG 1 cut(s) 115
Bst2UI CCWGG 3 cut(s) 98, 421, 857
Bst4CI ACNGT 1 cut(s) 544
Bst6I CTCTTC 1 cut(s) 25
BstACI GRCGYC 1 cut(s) 560
BstBI TTCGAA 1 cut(s) 849
BstC8I GCNNGC 2 cut(s) 70, 687
BstDEI CTNAG 5 cut(s) 510, 577, 641, 751, 799
BstF5I GGATG 4 cut(s) 137, 150, 473, 537
BstFNI CGCG 1 cut(s) 87
BstMAI GTCTC 1 cut(s) 754
BstMWI GCNNNNNNNGC 3 cut(s) 93, 421, 691
BstNI CCWGG 3 cut(s) 98, 421, 857
BstSCI CCNGG 5 cut(s) 96, 280, 351, 419, 855
BstSFI CTRYAG 1 cut(s) 336
BstSLI GKGCMC 4 cut(s) 490, 591, 633, 649
BstUI CGCG 1 cut(s) 87
BstV1I GCAGC 3 cut(s) 134, 548, 564
BstX2I RGATCY 8 cut(s) 178, 259, 277, 284, 505, 656, 724, 747
BstYI RGATCY 8 cut(s) 178, 259, 277, 284, 505, 656, 724, 747
BsuRI GGCC 4 cut(s) 452, 488, 668, 714
BtgZI GCGATG 2 cut(s) 388, 490
BtsCI GGATG 4 cut(s) 137, 150, 473, 537
BtsI GCAGTG 1 cut(s) 554
BtsIMutI CAGTG 2 cut(s) 416, 554
Cac8I GCNNGC 2 cut(s) 70, 687
Cfr10I RCCGGY 1 cut(s) 685
Cfr13I GGNCC 4 cut(s) 451, 486, 487, 666
CseI GACGC 2 cut(s) 61, 549
Csp6I GTAC 2 cut(s) 120, 315
CviAII CATG 4 cut(s) 203, 248, 429, 564
CviQI GTAC 2 cut(s) 120, 315
DdeI CTNAG 5 cut(s) 510, 577, 641, 751, 799
DrdI GACNNNNNNGTC 1 cut(s) 243
DseDI GACNNNNNNGTC 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Ecl136II GAGCTC 1 cut(s) 8
Eco130I CCWWGG 1 cut(s) 40
Eco24I GRGCYC 2 cut(s) 10, 490
Eco53kI GAGCTC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 693
EcoICRI GAGCTC 1 cut(s) 8
EcoO109I RGGNCCY 1 cut(s) 487
EcoRII CCWGG 3 cut(s) 96, 419, 855
EcoT14I CCWWGG 1 cut(s) 40
EcoT38I GRGCYC 2 cut(s) 10, 490
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 4 cut(s) 206, 251, 432, 567
FaiI YATR 7 cut(s) 204, 249, 338, 430, 565, 651, 672
FatI CATG 4 cut(s) 202, 247, 428, 563
Fnu4HI GCNGC 5 cut(s) 29, 32, 148, 537, 553
FokI GGATG 4 cut(s) 124, 137, 480, 544
FriOI GRGCYC 2 cut(s) 10, 490
Fsp4HI GCNGC 5 cut(s) 29, 32, 148, 537, 553
FspBI CTAG 1 cut(s) 41
GluI GCNGC 5 cut(s) 29, 32, 148, 537, 553
HaeIII GGCC 4 cut(s) 452, 488, 668, 714
HapII CCGG 6 cut(s) 141, 281, 305, 352, 686, 715
HgaI GACGC 2 cut(s) 61, 549
Hin1I GRCGYC 1 cut(s) 560
Hin1II CATG 4 cut(s) 206, 251, 432, 567
HinfI GANTC 1 cut(s) 113
HpaII CCGG 6 cut(s) 141, 281, 305, 352, 686, 715
HphI GGTGA 2 cut(s) 242, 473
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 4 cut(s) 224, 323, 642, 759
Hpy188III TCNNGA 3 cut(s) 110, 579, 745
Hpy8I GTNNAC 1 cut(s) 120
Hpy99I CGWCG 1 cut(s) 544
HpyAV CCTTC 3 cut(s) 139, 192, 458
HpyCH4III ACNGT 1 cut(s) 544
HpyCH4IV ACGT 1 cut(s) 406
HpyCH4V TGCA 5 cut(s) 150, 499, 547, 552, 594
HpyF10VI GCNNNNNNNGC 3 cut(s) 93, 421, 691
HpyF3I CTNAG 5 cut(s) 510, 577, 641, 751, 799
HpySE526I ACGT 1 cut(s) 406
Hsp92I GRCGYC 1 cut(s) 560
Hsp92II CATG 4 cut(s) 206, 251, 432, 567
KroI GCCGGC 1 cut(s) 685
KroNI GCCGGC 1 cut(s) 687
LmnI GCTCC 1 cut(s) 354
Lsp1109I GCAGC 3 cut(s) 134, 548, 564
LweI GCATC 1 cut(s) 159
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 406
MaeIII GTNAC 2 cut(s) 230, 841
MboII GAAGA 2 cut(s) 12, 321
MfeI CAATTG 1 cut(s) 764
MflI RGATCY 8 cut(s) 178, 259, 277, 284, 505, 656, 724, 747
MhlI GDGCHC 5 cut(s) 10, 490, 591, 633, 649
MluCI AATT 2 cut(s) 764, 816
MlyI GAGTC 1 cut(s) 107
MmeI TCCRAC 2 cut(s) 157, 598
MroNI GCCGGC 1 cut(s) 685
MslI CAYNNNNRTG 1 cut(s) 568
MspI CCGG 6 cut(s) 141, 281, 305, 352, 686, 715
MspR9I CCNGG 5 cut(s) 98, 282, 353, 421, 857
MunI CAATTG 1 cut(s) 764
MvaI CCWGG 3 cut(s) 98, 421, 857
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 3 cut(s) 93, 421, 691
NaeI GCCGGC 1 cut(s) 687
NciI CCSGG 2 cut(s) 282, 353
NgoMIV GCCGGC 1 cut(s) 685
NlaIII CATG 4 cut(s) 206, 251, 432, 567
NlaIV GGNNCC 9 cut(s) 180, 261, 279, 350, 488, 507, 588, 630, 726
NmeAIII GCCGAG 1 cut(s) 536
NmuCI GTSAC 1 cut(s) 230
NspV TTCGAA 1 cut(s) 849
PcsI WCGNNNNNNNCGW 1 cut(s) 412
PdiI GCCGGC 1 cut(s) 687
PfoI TCCNGGA 1 cut(s) 280
PkrI GCNGC 5 cut(s) 30, 33, 149, 538, 554
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
Psp124BI GAGCTC 1 cut(s) 10
Psp6I CCWGG 3 cut(s) 96, 419, 855
PspGI CCWGG 3 cut(s) 96, 419, 855
PspN4I GGNNCC 9 cut(s) 180, 261, 279, 350, 488, 507, 588, 630, 726
PspOMI GGGCCC 1 cut(s) 486
PspPI GGNCC 4 cut(s) 451, 486, 487, 666
PsuI RGATCY 8 cut(s) 178, 259, 277, 284, 505, 656, 724, 747
RsaI GTAC 2 cut(s) 121, 316
RsaNI GTAC 2 cut(s) 120, 315
RseI CAYNNNNRTG 1 cut(s) 568
SacI GAGCTC 1 cut(s) 10
SatI GCNGC 5 cut(s) 29, 32, 148, 537, 553
Sau96I GGNCC 4 cut(s) 451, 486, 487, 666
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 5 cut(s) 98, 282, 353, 421, 857
SduI GDGCHC 5 cut(s) 10, 490, 591, 633, 649
SfaNI GCATC 1 cut(s) 159
SfcI CTRYAG 1 cut(s) 336
SfuI TTCGAA 1 cut(s) 849
SmiMI CAYNNNNRTG 1 cut(s) 568
Sse9I AATT 2 cut(s) 764, 816
SsiI CCGC 5 cut(s) 28, 31, 87, 241, 568
SspMI CTAG 1 cut(s) 41
SstI GAGCTC 1 cut(s) 10
StyD4I CCNGG 5 cut(s) 96, 280, 351, 419, 855
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 1 cut(s) 544
TaiI ACGT 1 cut(s) 409
TaqI TCGA 3 cut(s) 395, 437, 849
TasI AATT 2 cut(s) 764, 816
TauI GCSGC 2 cut(s) 31, 34
TscAI CASTG 2 cut(s) 416, 554
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 3 cut(s) 147, 536, 552
Tsp45I GTSAC 1 cut(s) 230
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 2 cut(s) 416, 554
XcmI CCANNNNNNNNNTGG 2 cut(s) 270, 614
XmaJI CCTAGG 1 cut(s) 40
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.