Rorug02G0373300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013774
Physical Location & Seq
Forward (+)
47612520 .. 47613150
631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0373300.1

Sequence Viewer

Length: 522 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGTAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAGCAGGTGGACTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTGTAGAGCAGGTTCAGAGGATCTATCTTCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGAGAGAAGCAGAAGAAGAGGGTCCACTTCGGATGTTCATCTGGTGTGATTGCTTTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAAGATGGAGATTGAAATCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGAAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTTACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.42

Weight (kDa)

9.59

Isoelectric Point (pI)

60.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 1.5e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 78
Acc36I ACCTGC 2 cut(s) 78, 160
AccIII TCCGGA 1 cut(s) 510
AciI CCGC 3 cut(s) 82, 438, 517
AclWI GGATC 2 cut(s) 188, 352
AcuI CTGAAG 1 cut(s) 173
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 2 cut(s) 220, 365
AleI CACNNNNGTG 1 cut(s) 447
AluBI AGCT 4 cut(s) 130, 193, 472, 497
AluI AGCT 4 cut(s) 130, 193, 472, 497
Alw21I GWGCWC 1 cut(s) 474
AlwI GGATC 2 cut(s) 188, 352
Ama87I CYCGRG 1 cut(s) 255
Aor13HI TCCGGA 1 cut(s) 510
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 369
AspS9I GGNCC 2 cut(s) 153, 277
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 404
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 2 cut(s) 153, 277
BanII GRGCYC 2 cut(s) 256, 474
BbsI GAAGAC 1 cut(s) 422
Bbv12I GWGCWC 1 cut(s) 474
BbvI GCAGC 1 cut(s) 62
BccI CCATC 4 cut(s) 26, 316, 349, 422
BceAI ACGGC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 55
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 2 cut(s) 78, 160
BisI GCNGC 2 cut(s) 51, 517
BlpI GCTNAGC 1 cut(s) 473
BlsI GCNGC 2 cut(s) 52, 518
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 2 cut(s) 153, 277
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 153, 277
BmiI GGNNCC 4 cut(s) 6, 155, 278, 515
BmrFI CCNGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 422
Bpu1102I GCTNAGC 1 cut(s) 473
BpuEI CTTGAG 2 cut(s) 107, 488
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 3 cut(s) 116, 292, 365
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 510
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse8I GATNNNNATC 3 cut(s) 116, 292, 365
BseAI TCCGGA 1 cut(s) 510
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 293
BseJI GATNNNNATC 3 cut(s) 116, 292, 365
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMII CTCAG 1 cut(s) 487
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 474
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 2 cut(s) 54, 511
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 389
BsmFI GGGAC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 2 cut(s) 256, 474
Bsp13I TCCGGA 1 cut(s) 510
Bsp143I GATC 4 cut(s) 106, 180, 210, 344
Bsp1720I GCTNAGC 1 cut(s) 473
BspACI CCGC 3 cut(s) 82, 438, 517
BspCNI CTCAG 1 cut(s) 486
BspEI TCCGGA 1 cut(s) 510
BspLI GGNNCC 4 cut(s) 6, 155, 278, 515
BspMI ACCTGC 2 cut(s) 78, 160
BspPI GGATC 2 cut(s) 188, 352
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 4 cut(s) 106, 180, 210, 344
Bst4CI ACNGT 2 cut(s) 163, 446
Bst6I CTCTTC 1 cut(s) 266
BstDEI CTNAG 1 cut(s) 473
BstF5I GGATG 2 cut(s) 37, 293
BstKTI GATC 4 cut(s) 109, 183, 213, 347
BstMBI GATC 4 cut(s) 106, 180, 210, 344
BstMWI GCNNNNNNNGC 2 cut(s) 79, 483
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 2 cut(s) 102, 162
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 422
BstX2I RGATCY 2 cut(s) 180, 344
BstYI RGATCY 2 cut(s) 180, 344
BtsCI GGATG 2 cut(s) 37, 293
BveI ACCTGC 2 cut(s) 78, 160
Cfr13I GGNCC 2 cut(s) 153, 277
Csp6I GTAC 1 cut(s) 202
CviAII CATG 4 cut(s) 70, 385, 389, 412
CviJI RGCY 9 cut(s) 53, 130, 193, 254, 453, 472, 477, 497, 516
CviKI_1 RGCY 9 cut(s) 53, 130, 193, 254, 453, 472, 477, 497, 516
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 473
DpnI GATC 4 cut(s) 108, 182, 212, 346
DpnII GATC 4 cut(s) 106, 180, 210, 344
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EciI GGCGGA 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 472
Eco24I GRGCYC 2 cut(s) 256, 474
Eco47I GGWCC 2 cut(s) 153, 277
Eco53kI GAGCTC 1 cut(s) 472
Eco57I CTGAAG 1 cut(s) 173
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 472
EcoO109I RGGNCCY 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 390
EcoT38I GRGCYC 2 cut(s) 256, 474
FaeI CATG 4 cut(s) 73, 388, 392, 415
FaiI YATR 7 cut(s) 71, 333, 342, 350, 386, 390, 413
FaqI GGGAC 1 cut(s) 139
FatI CATG 4 cut(s) 69, 384, 388, 411
Fnu4HI GCNGC 2 cut(s) 51, 517
FokI GGATG 2 cut(s) 44, 300
FriOI GRGCYC 2 cut(s) 256, 474
Fsp4HI GCNGC 2 cut(s) 51, 517
GluI GCNGC 2 cut(s) 51, 517
GsaI CCCAGC 1 cut(s) 19
HapII CCGG 2 cut(s) 54, 511
Hin1II CATG 4 cut(s) 73, 388, 392, 415
HinfI GANTC 2 cut(s) 94, 117
HpaII CCGG 2 cut(s) 54, 511
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 3 cut(s) 93, 244, 280
Hpy188I TCNGA 4 cut(s) 111, 177, 287, 427
Hpy188III TCNNGA 4 cut(s) 220, 241, 257, 511
Hpy8I GTNNAC 3 cut(s) 93, 244, 280
HpyAV CCTTC 1 cut(s) 380
HpyCH4III ACNGT 2 cut(s) 163, 446
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 388
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 483
HpyF3I CTNAG 1 cut(s) 473
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 4 cut(s) 73, 388, 392, 415
Kpn2I TCCGGA 1 cut(s) 510
Kzo9I GATC 4 cut(s) 106, 180, 210, 344
LmnI GCTCC 3 cut(s) 84, 127, 513
LpnPI CCDG 7 cut(s) 29, 67, 73, 155, 282, 483, 496
Lsp1109I GCAGC 1 cut(s) 62
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 2 cut(s) 41, 440
MalI GATC 4 cut(s) 108, 182, 212, 346
MboI GATC 4 cut(s) 106, 180, 210, 344
MboII GAAGA 5 cut(s) 179, 280, 283, 364, 427
MflI RGATCY 2 cut(s) 180, 344
MhlI GDGCHC 2 cut(s) 256, 474
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 9 cut(s) 22, 29, 131, 171, 267, 384, 388, 425, 481
Mph1103I ATGCAT 1 cut(s) 390
MroI TCCGGA 1 cut(s) 510
MroXI GAANNNNTTC 1 cut(s) 369
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 1 cut(s) 447
MspA1I CMGCKG 2 cut(s) 193, 519
MspI CCGG 2 cut(s) 54, 511
MspR9I CCNGG 1 cut(s) 55
MwoI GCNNNNNNNGC 2 cut(s) 79, 483
NciI CCSGG 1 cut(s) 55
NdeII GATC 4 cut(s) 106, 180, 210, 344
NlaIII CATG 4 cut(s) 73, 388, 392, 415
NlaIV GGNNCC 4 cut(s) 6, 155, 278, 515
NmuCI GTSAC 1 cut(s) 440
NsiI ATGCAT 1 cut(s) 390
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 447
PaeR7I CTCGAG 1 cut(s) 255
PaqCI CACCTGC 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 369
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 52, 518
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 474
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 4 cut(s) 6, 155, 278, 515
PspPI GGNCC 2 cut(s) 153, 277
PspPPI RGGWCCY 1 cut(s) 153
PsrI GAACNNNNNNTAC 2 cut(s) 156, 188
PsuI RGATCY 2 cut(s) 180, 344
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 447
SacI GAGCTC 1 cut(s) 474
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 2 cut(s) 51, 517
Sau3AI GATC 4 cut(s) 106, 180, 210, 344
Sau96I GGNCC 2 cut(s) 153, 277
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 2 cut(s) 256, 474
SetI ASST 9 cut(s) 92, 132, 155, 174, 195, 228, 436, 474, 499
SfcI CTRYAG 2 cut(s) 102, 162
Sfr274I CTCGAG 1 cut(s) 255
SinI GGWCC 2 cut(s) 153, 277
SlaI CTCGAG 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 447
SmlI CTYRAG 3 cut(s) 122, 255, 467
SmoI CTYRAG 3 cut(s) 122, 255, 467
SsiI CCGC 3 cut(s) 82, 438, 517
SstI GAGCTC 1 cut(s) 474
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 2 cut(s) 163, 446
TaiI ACGT 1 cut(s) 228
TaqI TCGA 2 cut(s) 213, 256
TauI GCSGC 1 cut(s) 519
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 3 cut(s) 282, 365, 428
VpaK11BI GGWCC 2 cut(s) 153, 277
XceI RCATGY 1 cut(s) 73
XhoI CTCGAG 1 cut(s) 255
XmnI GAANNNNTTC 1 cut(s) 369
Zsp2I ATGCAT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.