Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0013774

Physical Location & Seq

Genomic Coordinates Reverse (-)

68728127 .. 68822363

Gene Structure 94237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG482400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGCTGGTGGTGGCTCCTAGTTCTAGGAAGCGACAATTACCCGGTGAGGACGAAAGCCGCGGCGGGTGATGGAGAGGGTATACTCCGACGGTGGCCTGACTTAGTGTGGCAGCGTCGGGATGGTGGTTTGGGTGCCCTGAGTATTCCTTCAGGGGCTTGGGCTTGGTCCGACTTTCTGGTGTCATGGGCTGCTCTAGGGCCTGGTGGTTCGGGGTGGGCTGTGTTGGTTAGGCCCGCTCACTTTTGGGCCCGTATTTGGGATCCAGGTGGATTGGGGACTAAGTGTATTGGGCTCTCAAAATATTGGAGTATGCCTTTGACTGCGTTTGGGGATTCTCTAGTAGCTTTAGGTTACTGGTCACTGGTTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

13.55

Weight (kDa)

8.98

Isoelectric Point (pI)

30.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013774)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000017683
rosa_multiflora	Rmu_sc0000965.1_g000004 Rmu_sc0003887.1_g000007 Rmu_sc0003887.1_g000008 Rmu_sc0005246.1_g000004 Rmu_sc0006007.1_g000004 Rmu_sc0006126.1_g000007 Rmu_sc0023546.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021520 Rroxscaffold_1G00045370 Rroxscaffold_3G00229580 Rroxscaffold_6G00412900 Rroxscaffold_6G00417010
rosa_rugosa	Rorug02G0373300
rosa_samantha	Rh5DG503600 Rh6AG135700 Rh6DG492500 Rh7DG482400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AccBSI	CCGCTC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	82
AccII	CGCG	1 cut(s)	62
AciI	CCGC	4 cut(s)	60, 62, 65, 237
AclWI	GGATC	2 cut(s)	257, 270
AcuI	CTGAAG	1 cut(s)	135
AfiI	CCNNNNNNNGG	2 cut(s)	258, 259
AjnI	CCWGG	2 cut(s)	202, 265
AluBI	AGCT	1 cut(s)	347
AluI	AGCT	1 cut(s)	347
AlwI	GGATC	2 cut(s)	257, 270
AoxI	GGCC	4 cut(s)	95, 200, 233, 249
ApaI	GGGCCC	1 cut(s)	253
ApeKI	GCWGC	2 cut(s)	112, 191
AspS9I	GGNCC	5 cut(s)	168, 200, 234, 249, 250
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	58, 80
AvaII	GGWCC	1 cut(s)	168
BaeGI	GKGCMC	2 cut(s)	139, 253
BamHI	GGATCC	1 cut(s)	262
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	2 cut(s)	253, 297
BbvI	GCAGC	2 cut(s)	124, 178
BccI	CCATC	2 cut(s)	65, 116
BciT130I	CCWGG	2 cut(s)	204, 267
BcnI	CCSGG	1 cut(s)	44
BfaI	CTAG	4 cut(s)	20, 26, 197, 341
BisI	GCNGC	4 cut(s)	60, 63, 113, 192
BlsI	GCNGC	4 cut(s)	61, 64, 114, 193
Bme1390I	CCNGG	3 cut(s)	44, 204, 267
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	5 cut(s)	168, 200, 234, 249, 250
BmiI	GGNNCC	4 cut(s)	17, 136, 251, 264
BmrFI	CCNGG	3 cut(s)	44, 204, 267
BpuMI	CCSGG	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	2 cut(s)	258, 259
Bse1I	ACTGG	2 cut(s)	362, 369
BseBI	CCWGG	2 cut(s)	204, 267
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	2 cut(s)	258, 259
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	2 cut(s)	362, 369
BseSI	GKGCMC	2 cut(s)	139, 253
BseXI	GCAGC	2 cut(s)	124, 178
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	4 cut(s)	97, 202, 235, 251
BshNI	GGYRCC	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	2 cut(s)	258, 259
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	4 cut(s)	97, 202, 235, 251
Bsp120I	GGGCCC	1 cut(s)	249
Bsp1286I	GDGCHC	3 cut(s)	139, 253, 297
Bsp143I	GATC	1 cut(s)	262
BspACI	CCGC	4 cut(s)	60, 62, 65, 237
BspANI	GGCC	4 cut(s)	97, 202, 235, 251
BspCNI	CTCAG	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	4 cut(s)	17, 136, 251, 264
BspPI	GGATC	2 cut(s)	257, 270
BspT107I	GGYRCC	1 cut(s)	134
BsrBI	CCGCTC	1 cut(s)	239
BsrI	ACTGG	2 cut(s)	362, 369
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	262
BssNAI	GTATAC	1 cut(s)	83
Bst1107I	GTATAC	1 cut(s)	83
Bst2UI	CCWGG	2 cut(s)	204, 267
Bst4CI	ACNGT	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	4 cut(s)	103, 140, 282, 372
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	127
BstFNI	CGCG	1 cut(s)	62
BstKTI	GATC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	262
BstNI	CCWGG	2 cut(s)	204, 267
BstSCI	CCNGG	3 cut(s)	42, 202, 265
BstSLI	GKGCMC	2 cut(s)	139, 253
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	124, 178
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BstZ17I	GTATAC	1 cut(s)	83
BsuRI	GGCC	4 cut(s)	97, 202, 235, 251
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	362
Cac8I	GCNNGC	1 cut(s)	237
Cfr13I	GGNCC	5 cut(s)	168, 200, 234, 249, 250
Cfr42I	CCGCGG	1 cut(s)	63
CseI	GACGC	1 cut(s)	104
CviAII	CATG	1 cut(s)	186
DdeI	CTNAG	4 cut(s)	103, 140, 282, 372
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
Eco24I	GRGCYC	2 cut(s)	253, 297
Eco47I	GGWCC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	135
EcoO109I	RGGNCCY	1 cut(s)	200
EcoRII	CCWGG	2 cut(s)	202, 265
EcoT38I	GRGCYC	2 cut(s)	253, 297
FaeI	CATG	1 cut(s)	189
FaiI	YATR	3 cut(s)	83, 187, 314
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	1 cut(s)	185
FauI	CCCGC	2 cut(s)	58, 244
FblI	GTMKAC	1 cut(s)	82
Fnu4HI	GCNGC	4 cut(s)	60, 63, 113, 192
FokI	GGATG	1 cut(s)	134
FriOI	GRGCYC	2 cut(s)	253, 297
Fsp4HI	GCNGC	4 cut(s)	60, 63, 113, 192
FspBI	CTAG	4 cut(s)	20, 26, 197, 341
GluI	GCNGC	4 cut(s)	60, 63, 113, 192
HaeIII	GGCC	4 cut(s)	97, 202, 235, 251
HapII	CCGG	1 cut(s)	44
HgaI	GACGC	1 cut(s)	104
Hin1II	CATG	1 cut(s)	189
HinfI	GANTC	1 cut(s)	335
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	2 cut(s)	58, 80
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	2 cut(s)	89, 172
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	1 cut(s)	83
Hpy99I	CGWCG	2 cut(s)	93, 120
HpyAV	CCTTC	1 cut(s)	159
HpyCH4III	ACNGT	1 cut(s)	93
HpyF3I	CTNAG	4 cut(s)	103, 140, 282, 372
Hsp92II	CATG	1 cut(s)	189
KspI	CCGCGG	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	262
LmnI	GCTCC	1 cut(s)	21
Lsp1109I	GCAGC	2 cut(s)	124, 178
MaeI	CTAG	4 cut(s)	20, 26, 197, 341
MaeIII	GTNAC	3 cut(s)	353, 360, 367
MalI	GATC	1 cut(s)	264
MbiI	CCGCTC	1 cut(s)	239
MboI	GATC	1 cut(s)	262
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	3 cut(s)	139, 253, 297
MluCI	AATT	1 cut(s)	37
MmeI	TCCRAC	2 cut(s)	112, 195
MnlI	CCTC	2 cut(s)	42, 70
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	3 cut(s)	44, 204, 267
MvaI	CCWGG	2 cut(s)	204, 267
MvnI	CGCG	1 cut(s)	62
NciI	CCSGG	1 cut(s)	44
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	1 cut(s)	189
NlaIV	GGNNCC	4 cut(s)	17, 136, 251, 264
NmuCI	GTSAC	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	4 cut(s)	61, 64, 114, 193
Psp6I	CCWGG	2 cut(s)	202, 265
PspGI	CCWGG	2 cut(s)	202, 265
PspN4I	GGNNCC	4 cut(s)	17, 136, 251, 264
PspOMI	GGGCCC	1 cut(s)	249
PspPI	GGNCC	5 cut(s)	168, 200, 234, 249, 250
PsuI	RGATCY	1 cut(s)	262
SacII	CCGCGG	1 cut(s)	63
SatI	GCNGC	4 cut(s)	60, 63, 113, 192
Sau3AI	GATC	1 cut(s)	262
Sau96I	GGNCC	5 cut(s)	168, 200, 234, 249, 250
ScrFI	CCNGG	3 cut(s)	44, 204, 267
SduI	GDGCHC	3 cut(s)	139, 253, 297
SetI	ASST	3 cut(s)	271, 349, 355
Sfr303I	CCGCGG	1 cut(s)	63
SgrBI	CCGCGG	1 cut(s)	63
SinI	GGWCC	1 cut(s)	168
Sse9I	AATT	1 cut(s)	37
SsiI	CCGC	4 cut(s)	60, 62, 65, 237
SspI	AATATT	1 cut(s)	305
SspMI	CTAG	4 cut(s)	20, 26, 197, 341
StyD4I	CCNGG	3 cut(s)	42, 202, 265
TaaI	ACNGT	1 cut(s)	93
TasI	AATT	1 cut(s)	37
TauI	GCSGC	2 cut(s)	62, 65
TfiI	GAWTC	1 cut(s)	335
TscAI	CASTG	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	2 cut(s)	112, 191
Tsp45I	GTSAC	1 cut(s)	360
TspRI	CASTG	1 cut(s)	369
VpaK11BI	GGWCC	1 cut(s)	168
XmiI	GTMKAC	1 cut(s)	82
XspI	CTAG	4 cut(s)	20, 26, 197, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.