Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013774

Physical Location & Seq

Genomic Coordinates Reverse (-)

26423195 .. 26423812

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00021520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTCATCTATATTCATCGGAAAAAATGAGAGCTCTCGCTCTCTCCCTTTGCGGCGGCTAACCCTAGGGTTTCGCCGTCCATTTTCGTTGGATTGCAACGATGGCGTTCGTAGTCCTTGGCTGTTTTTGGACTCGAGAATCTCTCCTCTTCAATCATCGAGTTGCTACACCCTAGTTTCGTCGTTTTGCCGATGGGATTCAAACCTTTCGGGTTTTGCTCGTGATGCACTCTGTTTCAATGATGGTGGTGAAGGGCGGCACCGTGATCCGGTGGATCCAAACCAAACTTGGGATCCCGGTTCTTCAACTCGAGTCCTGATCTTTTCCGTTTGGGGGGATATGGCTTACGGGTGCCGCTACAAGGCTTTGGCGGTGGATGGTGTCAATGTGTTTGGGTCCCCCTTGGCGGCGTTAGGTGCTTGGTGGTTGGAGGCTCGCCATTGGGATTCTAGATCTATTGTCGGTTTGGCTTTGCTAGCGGCGCCGCGATGTGGCTTGGTGGGACGGCTGAAAATGGTGCCTTGTCCTCCCGGCGAAGAGTTTTCCGAGTTGGGGCGAGGTGGAACGAGGATGACCGGTCTTGGTCTTTGCGTGCGGATGGTGGTGGCGCAGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

22.49

Weight (kDa)

8.9

Isoelectric Point (pI)

59.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013774)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000017683
rosa_multiflora	Rmu_sc0000965.1_g000004 Rmu_sc0003887.1_g000007 Rmu_sc0003887.1_g000008 Rmu_sc0005246.1_g000004 Rmu_sc0006007.1_g000004 Rmu_sc0006126.1_g000007 Rmu_sc0023546.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021520 Rroxscaffold_1G00045370 Rroxscaffold_3G00229580 Rroxscaffold_6G00412900 Rroxscaffold_6G00417010
rosa_rugosa	Rorug02G0373300
rosa_samantha	Rh5DG503600 Rh6AG135700 Rh6DG492500 Rh7DG482400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	258, 351, 481, 517
AccII	CGCG	1 cut(s)	487
AciI	CCGC	9 cut(s)	52, 55, 256, 355, 371, 407, 479, 485, 595
AclWI	GGATC	5 cut(s)	260, 269, 282, 287, 300
AcyI	GRCGYC	1 cut(s)	482
AfiI	CCNNNNNNNGG	7 cut(s)	268, 289, 333, 361, 406, 491, 552
AgeI	ACCGGT	1 cut(s)	575
AgsI	TTSAA	4 cut(s)	152, 201, 238, 306
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Alw21I	GWGCWC	1 cut(s)	35
AlwI	GGATC	5 cut(s)	260, 269, 282, 287, 300
Ama87I	CYCGRG	2 cut(s)	133, 309
ApeKI	GCWGC	1 cut(s)	610
AsiGI	ACCGGT	1 cut(s)	575
AspA2I	CCTAGG	1 cut(s)	64
AspLEI	GCGC	2 cut(s)	484, 610
AspS9I	GGNCC	1 cut(s)	396
AsuC2I	CCSGG	2 cut(s)	297, 531
AsuHPI	GGTGA	1 cut(s)	260
AsuNHI	GCTAGC	1 cut(s)	475
AvaI	CYCGRG	2 cut(s)	133, 309
AvaII	GGWCC	1 cut(s)	396
AvrII	CCTAGG	1 cut(s)	64
BamHI	GGATCC	2 cut(s)	274, 292
BanI	GGYRCC	4 cut(s)	258, 351, 481, 517
BanII	GRGCYC	1 cut(s)	35
BauI	CACGAG	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	35
BccI	CCATC	5 cut(s)	95, 186, 236, 371, 592
BceAI	ACGGC	3 cut(s)	60, 521, 598
BcnI	CCSGG	2 cut(s)	297, 531
BfaI	CTAG	4 cut(s)	65, 173, 450, 476
BfoI	RGCGCY	1 cut(s)	485
BglII	AGATCT	1 cut(s)	452
BisI	GCNGC	8 cut(s)	53, 56, 257, 355, 408, 480, 485, 611
BlnI	CCTAGG	1 cut(s)	64
BlsI	GCNGC	8 cut(s)	54, 57, 258, 356, 409, 481, 486, 612
Bme1390I	CCNGG	2 cut(s)	297, 531
Bme18I	GGWCC	1 cut(s)	396
BmeT110I	CYCGRG	2 cut(s)	133, 309
BmgT120I	GGNCC	1 cut(s)	396
BmiI	GGNNCC	8 cut(s)	260, 276, 294, 353, 397, 398, 483, 519
BmrFI	CCNGG	2 cut(s)	297, 531
BmsI	GCATC	1 cut(s)	214
BmtI	GCTAGC	1 cut(s)	479
BplI	GAGNNNNNCTC	2 cut(s)	127, 159
BpuMI	CCSGG	2 cut(s)	297, 531
BsaHI	GRCGYC	1 cut(s)	482
BsaJI	CCNNGG	3 cut(s)	64, 116, 402
BsaWI	WCCGGW	2 cut(s)	268, 575
Bsc4I	CCNNNNNNNGG	7 cut(s)	268, 289, 333, 361, 406, 491, 552
Bse118I	RCCGGY	1 cut(s)	575
BseDI	CCNNGG	3 cut(s)	64, 116, 402
BseGI	GGATG	3 cut(s)	382, 576, 603
BseLI	CCNNNNNNNGG	7 cut(s)	268, 289, 333, 361, 406, 491, 552
BseRI	GAGGAG	1 cut(s)	135
Bsh1236I	CGCG	1 cut(s)	487
BshNI	GGYRCC	4 cut(s)	258, 351, 481, 517
BshTI	ACCGGT	1 cut(s)	575
BsiHKAI	GWGCWC	1 cut(s)	35
BsiHKCI	CYCGRG	2 cut(s)	133, 309
BsiSI	CCGG	4 cut(s)	269, 297, 531, 576
BslFI	GGGAC	2 cut(s)	382, 516
BslI	CCNNNNNNNGG	7 cut(s)	268, 289, 333, 361, 406, 491, 552
BsmFI	GGGAC	2 cut(s)	382, 516
BsoBI	CYCGRG	2 cut(s)	133, 309
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	5 cut(s)	265, 274, 292, 318, 452
BspACI	CCGC	9 cut(s)	52, 55, 256, 355, 371, 407, 479, 485, 595
BspFNI	CGCG	1 cut(s)	487
BspLI	GGNNCC	8 cut(s)	260, 276, 294, 353, 397, 398, 483, 519
BspOI	GCTAGC	1 cut(s)	479
BspPI	GGATC	5 cut(s)	260, 269, 282, 287, 300
BspT107I	GGYRCC	4 cut(s)	258, 351, 481, 517
BsrFI	RCCGGY	1 cut(s)	575
BssAI	RCCGGY	1 cut(s)	575
BssECI	CCNNGG	3 cut(s)	64, 116, 402
BssMI	GATC	5 cut(s)	265, 274, 292, 318, 452
BssNI	GRCGYC	1 cut(s)	482
BssSI	CACGAG	1 cut(s)	219
BssT1I	CCWWGG	3 cut(s)	64, 116, 402
Bst2BI	CACGAG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	2 cut(s)	153, 531
BstACI	GRCGYC	1 cut(s)	482
BstC8I	GCNNGC	3 cut(s)	436, 477, 593
BstF5I	GGATG	3 cut(s)	382, 576, 603
BstFNI	CGCG	1 cut(s)	487
BstH2I	RGCGCY	1 cut(s)	485
BstHHI	GCGC	2 cut(s)	484, 610
BstKTI	GATC	5 cut(s)	268, 277, 295, 321, 455
BstMBI	GATC	5 cut(s)	265, 274, 292, 318, 452
BstMWI	GCNNNNNNNGC	5 cut(s)	102, 224, 416, 476, 481
BstSCI	CCNGG	2 cut(s)	295, 529
BstUI	CGCG	1 cut(s)	487
BstX2I	RGATCY	3 cut(s)	274, 292, 452
BstYI	RGATCY	3 cut(s)	274, 292, 452
BtgZI	GCGATG	1 cut(s)	502
BtsCI	GGATG	3 cut(s)	382, 576, 603
Cac8I	GCNNGC	3 cut(s)	436, 477, 593
CfoI	GCGC	2 cut(s)	484, 610
Cfr10I	RCCGGY	1 cut(s)	575
Cfr13I	GGNCC	1 cut(s)	396
CspAI	ACCGGT	1 cut(s)	575
CspCI	CAANNNNNGTGG	2 cut(s)	226, 261
DinI	GGCGCC	1 cut(s)	483
DpnI	GATC	5 cut(s)	267, 276, 294, 320, 454
DpnII	GATC	5 cut(s)	265, 274, 292, 318, 452
Eam1104I	CTCTTC	2 cut(s)	153, 531
EarI	CTCTTC	2 cut(s)	153, 531
Ecl136II	GAGCTC	1 cut(s)	33
Eco130I	CCWWGG	3 cut(s)	64, 116, 402
Eco24I	GRGCYC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	396
Eco53kI	GAGCTC	1 cut(s)	33
Eco88I	CYCGRG	2 cut(s)	133, 309
EcoICRI	GAGCTC	1 cut(s)	33
EcoO109I	RGGNCCY	1 cut(s)	396
EcoT14I	CCWWGG	3 cut(s)	64, 116, 402
EcoT38I	GRGCYC	1 cut(s)	35
EgeI	GGCGCC	1 cut(s)	483
EheI	GGCGCC	1 cut(s)	483
ErhI	CCWWGG	3 cut(s)	64, 116, 402
FaiI	YATR	2 cut(s)	11, 341
FaqI	GGGAC	2 cut(s)	382, 516
Fnu4HI	GCNGC	8 cut(s)	53, 56, 257, 355, 408, 480, 485, 611
FokI	GGATG	3 cut(s)	389, 583, 610
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	8 cut(s)	53, 56, 257, 355, 408, 480, 485, 611
FspBI	CTAG	4 cut(s)	65, 173, 450, 476
GlaI	GCGC	2 cut(s)	483, 609
GluI	GCNGC	8 cut(s)	53, 56, 257, 355, 408, 480, 485, 611
HaeII	RGCGCY	1 cut(s)	485
HapII	CCGG	4 cut(s)	269, 297, 531, 576
HhaI	GCGC	2 cut(s)	484, 610
Hin1I	GRCGYC	1 cut(s)	482
Hin6I	GCGC	2 cut(s)	482, 608
HinP1I	GCGC	2 cut(s)	482, 608
HinfI	GANTC	5 cut(s)	131, 138, 197, 312, 446
HpaII	CCGG	4 cut(s)	269, 297, 531, 576
HphI	GGTGA	1 cut(s)	260
Hpy188I	TCNGA	2 cut(s)	20, 547
Hpy188III	TCNNGA	4 cut(s)	135, 221, 316, 450
Hpy99I	CGWCG	1 cut(s)	184
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4V	TGCA	2 cut(s)	96, 227
HpyF10VI	GCNNNNNNNGC	5 cut(s)	102, 224, 416, 476, 481
Hsp92I	GRCGYC	1 cut(s)	482
HspAI	GCGC	2 cut(s)	482, 608
KasI	GGCGCC	1 cut(s)	481
KflI	GGGWCCC	1 cut(s)	396
Kzo9I	GATC	5 cut(s)	265, 274, 292, 318, 452
LpnPI	CCDG	5 cut(s)	282, 310, 329, 544, 589
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	4 cut(s)	65, 173, 450, 476
MalI	GATC	5 cut(s)	267, 276, 294, 320, 454
MboI	GATC	5 cut(s)	265, 274, 292, 318, 452
MboII	GAAGA	3 cut(s)	140, 294, 548
MflI	RGATCY	3 cut(s)	274, 292, 452
MhlI	GDGCHC	1 cut(s)	35
Mly113I	GGCGCC	1 cut(s)	482
MlyI	GAGTC	2 cut(s)	125, 321
MmeI	TCCRAC	2 cut(s)	69, 408
MnlI	CCTC	5 cut(s)	156, 424, 537, 551, 561
MspI	CCGG	4 cut(s)	269, 297, 531, 576
MspR9I	CCNGG	2 cut(s)	297, 531
MvnI	CGCG	1 cut(s)	487
MwoI	GCNNNNNNNGC	5 cut(s)	102, 224, 416, 476, 481
NarI	GGCGCC	1 cut(s)	482
NciI	CCSGG	2 cut(s)	297, 531
NdeII	GATC	5 cut(s)	265, 274, 292, 318, 452
NheI	GCTAGC	1 cut(s)	475
NlaIV	GGNNCC	8 cut(s)	260, 276, 294, 353, 397, 398, 483, 519
PaeR7I	CTCGAG	2 cut(s)	133, 309
PfeI	GAWTC	3 cut(s)	138, 197, 446
PinAI	ACCGGT	1 cut(s)	575
PkrI	GCNGC	8 cut(s)	54, 57, 258, 356, 409, 481, 486, 612
PleI	GAGTC	2 cut(s)	125, 320
PluTI	GGCGCC	1 cut(s)	485
PpsI	GAGTC	2 cut(s)	125, 320
PpuMI	RGGWCCY	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	35
Psp5II	RGGWCCY	1 cut(s)	396
PspN4I	GGNNCC	8 cut(s)	260, 276, 294, 353, 397, 398, 483, 519
PspPI	GGNCC	1 cut(s)	396
PspPPI	RGGWCCY	1 cut(s)	396
PspXI	VCTCGAGB	1 cut(s)	309
PsuI	RGATCY	3 cut(s)	274, 292, 452
SacI	GAGCTC	1 cut(s)	35
SatI	GCNGC	8 cut(s)	53, 56, 257, 355, 408, 480, 485, 611
Sau3AI	GATC	5 cut(s)	265, 274, 292, 318, 452
Sau96I	GGNCC	1 cut(s)	396
SchI	GAGTC	2 cut(s)	125, 321
ScrFI	CCNGG	2 cut(s)	297, 531
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	4 cut(s)	35, 207, 418, 562
SfaNI	GCATC	1 cut(s)	214
SfoI	GGCGCC	1 cut(s)	483
Sfr274I	CTCGAG	2 cut(s)	133, 309
SinI	GGWCC	1 cut(s)	396
SlaI	CTCGAG	2 cut(s)	133, 309
SmlI	CTYRAG	2 cut(s)	133, 309
SmoI	CTYRAG	2 cut(s)	133, 309
SsiI	CCGC	9 cut(s)	52, 55, 256, 355, 371, 407, 479, 485, 595
SspDI	GGCGCC	1 cut(s)	481
SspMI	CTAG	4 cut(s)	65, 173, 450, 476
SstI	GAGCTC	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	295, 529
StyI	CCWWGG	3 cut(s)	64, 116, 402
TaaI	ACNGT	1 cut(s)	263
TaqI	TCGA	3 cut(s)	134, 158, 310
TauI	GCSGC	7 cut(s)	55, 58, 259, 357, 410, 482, 487
TfiI	GAWTC	3 cut(s)	138, 197, 446
TseI	GCWGC	1 cut(s)	610
TspDTI	ATGAA	1 cut(s)	4
TspGWI	ACGGA	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	396
XbaI	TCTAGA	1 cut(s)	449
XcmI	CCANNNNNNNNNTGG	1 cut(s)	285
XhoI	CTCGAG	2 cut(s)	133, 309
XmaJI	CCTAGG	1 cut(s)	64
XspI	CTAG	4 cut(s)	65, 173, 450, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.