Rh6AG135700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0013774
Physical Location & Seq
Forward (+)
20600154 .. 20605364
5211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG135700.1

Sequence Viewer

Length: 216 bp
ATGACGTCTTGTAGGATCAGCTCAAGCTTCCGGTTTCCAGGTCGTGGAGGAGCAGGGAAGACAACAAAGATGCTAGCTCTGGGTTTAACAAGGGAAGGCGGGGAAGAAAAGGGTGGTGATGGCGACACCGATGAGGATGAAGAGGATGCGTTGCTCGCGAAGCATGTAGAGAATTGGTCTCTTCTCATTATCTTCCGTGACATCACCAGCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.66

Weight (kDa)

4.81

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccB7I CCANNNNNTGG 1 cut(s) 44
AccII CGCG 1 cut(s) 158
AciI CCGC 1 cut(s) 99
AclWI GGATC 1 cut(s) 23
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 44
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 4 cut(s) 21, 27, 77, 213
AluI AGCT 4 cut(s) 21, 27, 77, 213
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 1 cut(s) 23
AlwNI CAGNNNCTG 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 210
AsuHPI GGTGA 2 cut(s) 128, 196
AsuNHI GCTAGC 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 65
BccI CCATC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 1 cut(s) 74
BisI GCNGC 1 cut(s) 211
BlsI GCNGC 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 39
BmsI GCATC 2 cut(s) 60, 136
BmtI GCTAGC 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 7
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 44
BseBI CCWGG 1 cut(s) 39
BseGI GGATG 2 cut(s) 142, 151
BseLI CCNNNNNNNGG 1 cut(s) 44
BseRI GAGGAG 1 cut(s) 63
Bsh1236I CGCG 1 cut(s) 158
BsiSI CCGG 1 cut(s) 31
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 183
Bso31I GGTCTC 1 cut(s) 183
Bsp143I GATC 1 cut(s) 15
Bsp68I TCGCGA 1 cut(s) 158
BspACI CCGC 1 cut(s) 99
BspFNI CGCG 1 cut(s) 158
BspOI GCTAGC 1 cut(s) 77
BspPI GGATC 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 183
BssMI GATC 1 cut(s) 15
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 39
Bst6I CTCTTC 2 cut(s) 135, 186
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 75, 156
BstF5I GGATG 2 cut(s) 142, 151
BstFNI CGCG 1 cut(s) 158
BstKTI GATC 1 cut(s) 18
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 1 cut(s) 15
BstMWI GCNNNNNNNGC 2 cut(s) 155, 160
BstNI CCWGG 1 cut(s) 39
BstNSI RCATGY 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 37
BstUI CGCG 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 65
BtsCI GGATG 2 cut(s) 142, 151
BtuMI TCGCGA 1 cut(s) 158
Cac8I GCNNGC 2 cut(s) 75, 156
CaiI CAGNNNCTG 1 cut(s) 213
CviAII CATG 1 cut(s) 164
CviJI RGCY 4 cut(s) 21, 27, 77, 213
CviKI_1 RGCY 4 cut(s) 21, 27, 77, 213
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
Eam1104I CTCTTC 2 cut(s) 135, 186
EarI CTCTTC 2 cut(s) 135, 186
Eco31I GGTCTC 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 37
FaeI CATG 1 cut(s) 167
FaiI YATR 1 cut(s) 165
FatI CATG 1 cut(s) 163
FauI CCCGC 1 cut(s) 92
Fnu4HI GCNGC 1 cut(s) 211
FokI GGATG 2 cut(s) 149, 158
Fsp4HI GCNGC 1 cut(s) 211
FspBI CTAG 1 cut(s) 74
GluI GCNGC 1 cut(s) 211
HapII CCGG 1 cut(s) 31
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 167
HindIII AAGCTT 1 cut(s) 25
HpaII CCGG 1 cut(s) 31
HphI GGTGA 2 cut(s) 128, 196
Hpy188III TCNNGA 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 89
HpyCH4IV ACGT 1 cut(s) 5
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 160
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 167
Kzo9I GATC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 5 cut(s) 24, 39, 44, 51, 65
LweI GCATC 2 cut(s) 60, 136
MaeI CTAG 1 cut(s) 74
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 1 cut(s) 197
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 5 cut(s) 70, 116, 152, 173, 184
MluCI AATT 1 cut(s) 172
MnlI CCTC 3 cut(s) 41, 127, 136
MseI TTAA 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 213
MspI CCGG 1 cut(s) 31
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MvnI CGCG 1 cut(s) 158
MwoI GCNNNNNNNGC 2 cut(s) 155, 160
NdeII GATC 1 cut(s) 15
NheI GCTAGC 1 cut(s) 73
NlaIII CATG 1 cut(s) 167
NmuCI GTSAC 1 cut(s) 197
NruI TCGCGA 1 cut(s) 158
NspI RCATGY 1 cut(s) 167
PflMI CCANNNNNTGG 1 cut(s) 44
PkrI GCNGC 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PstNI CAGNNNCTG 1 cut(s) 213
PvuII CAGCTG 1 cut(s) 213
RruI TCGCGA 1 cut(s) 158
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 1 cut(s) 211
Sau3AI GATC 1 cut(s) 15
ScrFI CCNGG 1 cut(s) 39
SetI ASST 6 cut(s) 8, 23, 29, 43, 79, 215
SfaNI GCATC 2 cut(s) 60, 136
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
Sse9I AATT 1 cut(s) 172
SsiI CCGC 1 cut(s) 99
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 37
TaiI ACGT 1 cut(s) 8
TasI AATT 1 cut(s) 172
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 1 cut(s) 210
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 153
TspGWI ACGGA 1 cut(s) 185
Van91I CCANNNNNTGG 1 cut(s) 44
XceI RCATGY 1 cut(s) 167
XspI CTAG 1 cut(s) 74
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.