Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0013774

Physical Location & Seq

Genomic Coordinates Reverse (-)

38822554 .. 38825346

Gene Structure 2793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00417010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGACGTGGTCCTTGGTCCTTGGCTGTCGAGTCTTTTGGACTCGAGAATCTCCCCTCTTCAACCTTCGGGTTGCTGCACCCTAGTCTCGTCTTTTTGCCGATGGGATTCAACCCCTTCGGGCTTTGCTCGTGCTACACTCTGTTTCAAGGATGGTGGTGAAGAGCGGCGCCATGATTTGGTGGATCCAAACCAAACTTGGGATCCCGGTCTATCGGTTTTGAGTCCGAATCCTTTCGGTTGGGAGGAGATGGCTTCGGGTGGTACTCCGGGGCTTCGGCGGTGGATGGTTGTAATGCATCCGGATCCTCTCGGGCGGCGATTAGTGATTGGTGGTTGGAGGATTTACCGCCGGGATTCTCGATCGGAGCAGAGGCCGAATTTGAGGGGGTCAAGGCTAGTGCCTAGTGTGGCTTTGGGTGCCCAAAGTAAAACCTTGTGGGTCCGGGCCTCTGCTCTATTGGATTGCTCAAGTAGGGCTTTGGGCTGGGCTTTCTTTCTTGGGGCTTTGCAACCGGTGAATGAGCCCGATGCTGTTAGGGTTCGCATTTGGGAGCCGAGAGACTTTTTAAAGGCCCTAAATTTATCTACATGTTGGAATTGTTTCTTTGGTTACTTAGGTAGAAGATTGCTCTCTATTCAGCGCATTATTTTGCGTGGATTAGGCAAGAGTCCAACTATTCGCACAGGCCAATACTTCATACTTCCTCAATCACAATCAACCTTCATACTTCCTCAATCACAATCAACCTTCATACTTCCTCAATCACAATCAACCTGCATACTTCCTCAATCACAATCAACATGCATACTTCCTCAATCACAATCAACCTTCATACTTCCTCAATCACAATCAACCTTCAACCTTCATACTTCCTCAATCACAATCAACCTGCATATATACTTCCTCAATCACAATCAACCTTCATACTTCCTCAATCACAATCAACCTGCATACTTCCTCAATCACAATCAACCTTCATACTTCCTCAATCACAATCAACCTGCATACTTCCTCAATCACAATCAACCTTCATACTTCCTCAATCACAATCAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

353

Amino Acids

40.02

Weight (kDa)

9.5

Isoelectric Point (pI)

87.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013774)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000017683
rosa_multiflora	Rmu_sc0000965.1_g000004 Rmu_sc0003887.1_g000007 Rmu_sc0003887.1_g000008 Rmu_sc0005246.1_g000004 Rmu_sc0006007.1_g000004 Rmu_sc0006126.1_g000007 Rmu_sc0023546.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021520 Rroxscaffold_1G00045370 Rroxscaffold_3G00229580 Rroxscaffold_6G00412900 Rroxscaffold_6G00417010
rosa_rugosa	Rorug02G0373300
rosa_samantha	Rh5DG503600 Rh6AG135700 Rh6DG492500 Rh7DG482400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	4 cut(s)	785, 900, 958, 1012
AccB1I	GGYRCC	2 cut(s)	168, 419
AccB7I	CCANNNNNTGG	1 cut(s)	178
AccBSI	CCGCTC	1 cut(s)	166
AccIII	TCCGGA	1 cut(s)	301
AciI	CCGC	4 cut(s)	166, 280, 316, 349
AclWI	GGATC	6 cut(s)	179, 192, 197, 210, 299, 312
AcsI	RAATTY	2 cut(s)	379, 580
AcyI	GRCGYC	1 cut(s)	169
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	2 cut(s)	178, 199
AflIII	ACRYGT	1 cut(s)	590
AgeI	ACCGGT	1 cut(s)	514
AgsI	TTSAA	4 cut(s)	62, 111, 148, 862
AjiI	CACGTC	1 cut(s)	7
Alw26I	GTCTC	2 cut(s)	91, 555
AlwI	GGATC	6 cut(s)	179, 192, 197, 210, 299, 312
Ama87I	CYCGRG	2 cut(s)	43, 311
Aor13HI	TCCGGA	1 cut(s)	301
AoxI	GGCC	4 cut(s)	374, 447, 573, 688
ApeKI	GCWGC	1 cut(s)	75
ApoI	RAATTY	2 cut(s)	379, 580
AsiGI	ACCGGT	1 cut(s)	514
Asp700I	GAANNNNTTC	2 cut(s)	233, 602
AspLEI	GCGC	2 cut(s)	171, 645
AspS9I	GGNCC	5 cut(s)	10, 17, 442, 447, 574
AsuC2I	CCSGG	4 cut(s)	207, 270, 353, 446
AsuHPI	GGTGA	2 cut(s)	170, 529
AvaI	CYCGRG	2 cut(s)	43, 311
AvaII	GGWCC	3 cut(s)	10, 17, 442
BaeGI	GKGCMC	1 cut(s)	424
BamHI	GGATCC	3 cut(s)	184, 202, 304
BanI	GGYRCC	2 cut(s)	168, 419
BanII	GRGCYC	1 cut(s)	528
BauI	CACGAG	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	4 cut(s)	96, 146, 244, 280
BcnI	CCSGG	4 cut(s)	207, 270, 353, 446
BcoDI	GTCTC	2 cut(s)	91, 555
BfaI	CTAG	3 cut(s)	83, 398, 405
BfoI	RGCGCY	1 cut(s)	172
BfuAI	ACCTGC	4 cut(s)	785, 900, 958, 1012
BisI	GCNGC	3 cut(s)	76, 167, 317
BlsI	GCNGC	3 cut(s)	77, 168, 318
Bme1390I	CCNGG	4 cut(s)	207, 270, 353, 446
Bme18I	GGWCC	3 cut(s)	10, 17, 442
BmeT110I	CYCGRG	2 cut(s)	43, 311
BmgBI	CACGTC	1 cut(s)	7
BmgT120I	GGNCC	5 cut(s)	10, 17, 442, 447, 574
BmiI	GGNNCC	7 cut(s)	170, 186, 204, 306, 421, 443, 555
BmrFI	CCNGG	4 cut(s)	207, 270, 353, 446
BmsI	GCATC	2 cut(s)	307, 520
BpuEI	CTTGAG	1 cut(s)	454
BpuMI	CCSGG	4 cut(s)	207, 270, 353, 446
BsaHI	GRCGYC	1 cut(s)	169
BsaJI	CCNNGG	3 cut(s)	13, 20, 269
BsaWI	WCCGGW	2 cut(s)	301, 514
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 199
Bse118I	RCCGGY	1 cut(s)	514
BseAI	TCCGGA	1 cut(s)	301
BseDI	CCNNGG	3 cut(s)	13, 20, 269
BseGI	GGATG	3 cut(s)	157, 291, 298
BseLI	CCNNNNNNNGG	2 cut(s)	178, 199
BseRI	GAGGAG	1 cut(s)	260
BseSI	GKGCMC	1 cut(s)	424
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	486
BsgI	GTGCAG	1 cut(s)	61
Bsh1285I	CGRYCG	1 cut(s)	365
BshFI	GGCC	4 cut(s)	376, 449, 575, 690
BshNI	GGYRCC	2 cut(s)	168, 419
BshTI	ACCGGT	1 cut(s)	514
BsiEI	CGRYCG	1 cut(s)	365
BsiHKCI	CYCGRG	2 cut(s)	43, 311
BsiSI	CCGG	6 cut(s)	207, 269, 302, 352, 445, 515
BslI	CCNNNNNNNGG	2 cut(s)	178, 199
BsmAI	GTCTC	2 cut(s)	91, 555
BsnI	GGCC	4 cut(s)	376, 449, 575, 690
BsoBI	CYCGRG	2 cut(s)	43, 311
Bsp1286I	GDGCHC	2 cut(s)	424, 528
Bsp13I	TCCGGA	1 cut(s)	301
Bsp143I	GATC	4 cut(s)	184, 202, 304, 362
BspACI	CCGC	4 cut(s)	166, 280, 316, 349
BspANI	GGCC	4 cut(s)	376, 449, 575, 690
BspEI	TCCGGA	1 cut(s)	301
BspLI	GGNNCC	7 cut(s)	170, 186, 204, 306, 421, 443, 555
BspMI	ACCTGC	4 cut(s)	785, 900, 958, 1012
BspPI	GGATC	6 cut(s)	179, 192, 197, 210, 299, 312
BspQI	GCTCTTC	1 cut(s)	156
BspT107I	GGYRCC	2 cut(s)	168, 419
BsrBI	CCGCTC	1 cut(s)	166
BsrFI	RCCGGY	1 cut(s)	514
BssAI	RCCGGY	1 cut(s)	514
BssECI	CCNNGG	3 cut(s)	13, 20, 269
BssMI	GATC	4 cut(s)	184, 202, 304, 362
BssNI	GRCGYC	1 cut(s)	169
BssSI	CACGAG	1 cut(s)	129
BssT1I	CCWWGG	2 cut(s)	13, 20
Bst2BI	CACGAG	1 cut(s)	129
Bst6I	CTCTTC	2 cut(s)	63, 156
BstACI	GRCGYC	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	616
BstF5I	GGATG	3 cut(s)	157, 291, 298
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	2 cut(s)	171, 645
BstKTI	GATC	4 cut(s)	187, 205, 307, 365
BstMAI	GTCTC	2 cut(s)	91, 555
BstMBI	GATC	4 cut(s)	184, 202, 304, 362
BstMCI	CGRYCG	1 cut(s)	365
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNSI	RCATGY	2 cut(s)	594, 807
BstSCI	CCNGG	4 cut(s)	205, 268, 351, 444
BstSLI	GKGCMC	1 cut(s)	424
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	3 cut(s)	184, 202, 304
BstYI	RGATCY	3 cut(s)	184, 202, 304
BsuRI	GGCC	4 cut(s)	376, 449, 575, 690
BtrI	CACGTC	1 cut(s)	7
BtsCI	GGATG	3 cut(s)	157, 291, 298
BveI	ACCTGC	4 cut(s)	785, 900, 958, 1012
CfoI	GCGC	2 cut(s)	171, 645
Cfr10I	RCCGGY	1 cut(s)	514
Cfr13I	GGNCC	5 cut(s)	10, 17, 442, 447, 574
Csp6I	GTAC	1 cut(s)	264
CspAI	ACCGGT	1 cut(s)	514
CspCI	CAANNNNNGTGG	2 cut(s)	136, 171
CviAII	CATG	3 cut(s)	173, 591, 804
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	1 cut(s)	616
DinI	GGCGCC	1 cut(s)	170
DpnI	GATC	4 cut(s)	186, 204, 306, 364
DpnII	GATC	4 cut(s)	184, 202, 304, 362
DraI	TTTAAA	1 cut(s)	570
Eam1104I	CTCTTC	2 cut(s)	63, 156
EarI	CTCTTC	2 cut(s)	63, 156
Eco130I	CCWWGG	2 cut(s)	13, 20
Eco24I	GRGCYC	1 cut(s)	528
Eco47I	GGWCC	3 cut(s)	10, 17, 442
Eco88I	CYCGRG	2 cut(s)	43, 311
EcoO109I	RGGNCCY	1 cut(s)	574
EcoT14I	CCWWGG	2 cut(s)	13, 20
EcoT22I	ATGCAT	2 cut(s)	300, 809
EcoT38I	GRGCYC	1 cut(s)	528
EgeI	GGCGCC	1 cut(s)	170
EheI	GGCGCC	1 cut(s)	170
ErhI	CCWWGG	2 cut(s)	13, 20
FaeI	CATG	3 cut(s)	176, 594, 807
FalI	AAGNNNNNCTT	2 cut(s)	463, 495
FatI	CATG	3 cut(s)	172, 590, 803
Fnu4HI	GCNGC	3 cut(s)	76, 167, 317
FokI	GGATG	3 cut(s)	164, 285, 298
FriOI	GRGCYC	1 cut(s)	528
Fsp4HI	GCNGC	3 cut(s)	76, 167, 317
FspBI	CTAG	3 cut(s)	83, 398, 405
GlaI	GCGC	2 cut(s)	170, 644
GluI	GCNGC	3 cut(s)	76, 167, 317
GsaI	CCCAGC	1 cut(s)	490
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	4 cut(s)	376, 449, 575, 690
HapII	CCGG	6 cut(s)	207, 269, 302, 352, 445, 515
HhaI	GCGC	2 cut(s)	171, 645
Hin1I	GRCGYC	1 cut(s)	169
Hin1II	CATG	3 cut(s)	176, 594, 807
Hin6I	GCGC	2 cut(s)	169, 643
HinP1I	GCGC	2 cut(s)	169, 643
HinfI	GANTC	8 cut(s)	31, 41, 48, 107, 223, 229, 356, 670
HpaII	CCGG	6 cut(s)	207, 269, 302, 352, 445, 515
HphI	GGTGA	2 cut(s)	170, 529
Hpy188I	TCNGA	2 cut(s)	228, 367
Hpy188III	TCNNGA	3 cut(s)	45, 302, 360
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	8 cut(s)	78, 298, 511, 780, 807, 895, 953, 1007
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	1 cut(s)	616
HpySE526I	ACGT	1 cut(s)	6
Hsp92I	GRCGYC	1 cut(s)	169
Hsp92II	CATG	3 cut(s)	176, 594, 807
HspAI	GCGC	2 cut(s)	169, 643
KasI	GGCGCC	1 cut(s)	168
Kpn2I	TCCGGA	1 cut(s)	301
Kzo9I	GATC	4 cut(s)	184, 202, 304, 362
LguI	GCTCTTC	1 cut(s)	156
LmnI	GCTCC	2 cut(s)	367, 553
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	2 cut(s)	307, 520
MaeI	CTAG	3 cut(s)	83, 398, 405
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	611
MalI	GATC	4 cut(s)	186, 204, 306, 364
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	4 cut(s)	184, 202, 304, 362
MboII	GAAGA	3 cut(s)	50, 173, 636
MflI	RGATCY	3 cut(s)	184, 202, 304
MhlI	GDGCHC	2 cut(s)	424, 528
MluCI	AATT	3 cut(s)	379, 580, 598
Mly113I	GGCGCC	1 cut(s)	169
MlyI	GAGTC	4 cut(s)	35, 40, 232, 679
MmeI	TCCRAC	3 cut(s)	317, 575, 698
Mph1103I	ATGCAT	2 cut(s)	300, 809
MroI	TCCGGA	1 cut(s)	301
MroXI	GAANNNNTTC	2 cut(s)	233, 602
MseI	TTAA	1 cut(s)	569
MspI	CCGG	6 cut(s)	207, 269, 302, 352, 445, 515
MspR9I	CCNGG	4 cut(s)	207, 270, 353, 446
MwoI	GCNNNNNNNGC	1 cut(s)	419
NarI	GGCGCC	1 cut(s)	169
NciI	CCSGG	4 cut(s)	207, 270, 353, 446
NdeII	GATC	4 cut(s)	184, 202, 304, 362
NlaIII	CATG	3 cut(s)	176, 594, 807
NlaIV	GGNNCC	7 cut(s)	170, 186, 204, 306, 421, 443, 555
NmeAIII	GCCGAG	1 cut(s)	582
NsiI	ATGCAT	2 cut(s)	300, 809
NspI	RCATGY	2 cut(s)	594, 807
PaeR7I	CTCGAG	1 cut(s)	43
PciI	ACATGT	1 cut(s)	590
PciSI	GCTCTTC	1 cut(s)	156
PdmI	GAANNNNTTC	2 cut(s)	233, 602
PfeI	GAWTC	4 cut(s)	48, 107, 229, 356
PflFI	GACNNNGTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	178
PinAI	ACCGGT	1 cut(s)	514
PkrI	GCNGC	3 cut(s)	77, 168, 318
Ple19I	CGATCG	1 cut(s)	365
PleI	GAGTC	4 cut(s)	35, 39, 231, 678
PluTI	GGCGCC	1 cut(s)	172
PpsI	GAGTC	4 cut(s)	35, 39, 231, 678
PscI	ACATGT	1 cut(s)	590
PspFI	CCCAGC	1 cut(s)	486
PspN4I	GGNNCC	7 cut(s)	170, 186, 204, 306, 421, 443, 555
PspPI	GGNCC	5 cut(s)	10, 17, 442, 447, 574
PsuI	RGATCY	3 cut(s)	184, 202, 304
PsyI	GACNNNGTC	1 cut(s)	8
PvuI	CGATCG	1 cut(s)	365
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	569
SatI	GCNGC	3 cut(s)	76, 167, 317
Sau3AI	GATC	4 cut(s)	184, 202, 304, 362
Sau96I	GGNCC	5 cut(s)	10, 17, 442, 447, 574
SchI	GAGTC	4 cut(s)	35, 40, 232, 679
ScrFI	CCNGG	4 cut(s)	207, 270, 353, 446
SduI	GDGCHC	2 cut(s)	424, 528
SfaNI	GCATC	2 cut(s)	307, 520
SfoI	GGCGCC	1 cut(s)	170
Sfr274I	CTCGAG	1 cut(s)	43
SinI	GGWCC	3 cut(s)	10, 17, 442
SlaI	CTCGAG	1 cut(s)	43
SmlI	CTYRAG	2 cut(s)	43, 469
SmoI	CTYRAG	2 cut(s)	43, 469
Sse9I	AATT	3 cut(s)	379, 580, 598
SsiI	CCGC	4 cut(s)	166, 280, 316, 349
SspDI	GGCGCC	1 cut(s)	168
SspMI	CTAG	3 cut(s)	83, 398, 405
StyD4I	CCNGG	4 cut(s)	205, 268, 351, 444
StyI	CCWWGG	2 cut(s)	13, 20
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	3 cut(s)	29, 44, 361
TasI	AATT	3 cut(s)	379, 580, 598
TauI	GCSGC	2 cut(s)	169, 319
TfiI	GAWTC	4 cut(s)	48, 107, 229, 356
Tru1I	TTAA	1 cut(s)	569
Tru9I	TTAA	1 cut(s)	569
TseI	GCWGC	1 cut(s)	75
TspDTI	ATGAA	8 cut(s)	688, 715, 742, 823, 857, 915, 969, 1023
Tth111I	GACNNNGTC	1 cut(s)	8
Van91I	CCANNNNNTGG	1 cut(s)	178
VpaK11BI	GGWCC	3 cut(s)	10, 17, 442
XapI	RAATTY	2 cut(s)	379, 580
XceI	RCATGY	2 cut(s)	594, 807
XcmI	CCANNNNNNNNNTGG	1 cut(s)	195
XhoI	CTCGAG	1 cut(s)	43
XmnI	GAANNNNTTC	2 cut(s)	233, 602
XspI	CTAG	3 cut(s)	83, 398, 405
Zsp2I	ATGCAT	2 cut(s)	300, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.