RLG00000017841

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016466
Physical Location & Seq
Forward (+)
22036057 .. 22036787
731 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017841

Sequence Viewer

Length: 384 bp
ATGGTGGAACCCAAAATCTCTAAGACCTTCCCTGTGAAACTGAAGCAAAAACCCAAGCCTCGCACCCCAGAGCCTATTCCCAAAGCTCTCGCTTCAAAAAGGCGGCGGGGGCGGCGACGACTCTGCTCGCAATGTTCTTGGCGGTTCGATCAATTCGTCAGTGCTCGAGGTTATAGAGGAGCTCCGATTGAGGTTTCGAAAGGGCTCGGCTGCGGTGGCTTACTGTCTCTACACCAGTGGAGGATGGCGTGGAGGATGGCGGTGGTGGTGGAGAAGTCAGATTTAGTTGTGGTGGTGGAAGAGCTAGTAACTGTCGATGAAGAGGCAGCAGTGGCGGTGGAGGCAATAAATTGTTTGAGTAAGGAAGGAAAATCATGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.33

Weight (kDa)

10.09

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 103, 106, 112, 142, 213, 260, 335
AcuI CTGAAG 1 cut(s) 62
AgsI TTSAA 1 cut(s) 96
AluBI AGCT 3 cut(s) 86, 182, 304
AluI AGCT 3 cut(s) 86, 182, 304
Alw21I GWGCWC 2 cut(s) 166, 184
Alw26I GTCTC 1 cut(s) 231
Ama87I CYCGRG 1 cut(s) 165
ApeKI GCWGC 2 cut(s) 210, 326
AsuII TTCGAA 1 cut(s) 197
AvaI CYCGRG 1 cut(s) 165
BanII GRGCYC 2 cut(s) 184, 207
Bbv12I GWGCWC 2 cut(s) 166, 184
BbvI GCAGC 2 cut(s) 197, 338
BccI CCATC 2 cut(s) 238, 250
BcgI CGANNNNNNTGC 2 cut(s) 105, 139
BcoDI GTCTC 1 cut(s) 231
BfaI CTAG 1 cut(s) 305
BisI GCNGC 4 cut(s) 104, 113, 211, 327
BlsI GCNGC 4 cut(s) 105, 114, 212, 328
BmeT110I CYCGRG 1 cut(s) 165
BmiI GGNNCC 1 cut(s) 9
Bpu14I TTCGAA 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 235
Bse3DI GCAATG 1 cut(s) 137
BseGI GGATG 2 cut(s) 249, 261
BseMI GCAATG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 235
BseRI GAGGAG 1 cut(s) 192
BseXI GCAGC 2 cut(s) 197, 338
BsiHKAI GWGCWC 2 cut(s) 166, 184
BsiHKCI CYCGRG 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 231
BsoBI CYCGRG 1 cut(s) 165
Bsp119I TTCGAA 1 cut(s) 197
Bsp1286I GDGCHC 3 cut(s) 166, 184, 207
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 7 cut(s) 103, 106, 112, 142, 213, 260, 335
BspLI GGNNCC 1 cut(s) 9
BspQI GCTCTTC 1 cut(s) 294
BspT104I TTCGAA 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 137
BsrI ACTGG 1 cut(s) 235
BssMI GATC 1 cut(s) 148
Bst4CI ACNGT 2 cut(s) 225, 313
Bst6I CTCTTC 2 cut(s) 294, 315
BstBI TTCGAA 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 2 cut(s) 249, 261
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 5 cut(s) 109, 112, 216, 332, 341
BstV1I GCAGC 2 cut(s) 197, 338
BtsCI GGATG 2 cut(s) 249, 261
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 3 cut(s) 166, 242, 336
Cac8I GCNNGC 1 cut(s) 128
CviAII CATG 1 cut(s) 375
CviJI RGCY 8 cut(s) 58, 73, 86, 182, 205, 210, 219, 304
CviKI_1 RGCY 8 cut(s) 58, 73, 86, 182, 205, 210, 219, 304
DdeI CTNAG 1 cut(s) 21
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eam1104I CTCTTC 2 cut(s) 294, 315
EarI CTCTTC 2 cut(s) 294, 315
Ecl136II GAGCTC 1 cut(s) 182
Eco24I GRGCYC 2 cut(s) 184, 207
Eco53kI GAGCTC 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 165
EcoICRI GAGCTC 1 cut(s) 182
EcoT38I GRGCYC 2 cut(s) 184, 207
FaeI CATG 1 cut(s) 378
FaiI YATR 2 cut(s) 174, 376
FatI CATG 1 cut(s) 374
FauI CCCGC 1 cut(s) 99
Fnu4HI GCNGC 4 cut(s) 104, 113, 211, 327
FokI GGATG 2 cut(s) 256, 268
FriOI GRGCYC 2 cut(s) 184, 207
Fsp4HI GCNGC 4 cut(s) 104, 113, 211, 327
FspBI CTAG 1 cut(s) 305
GluI GCNGC 4 cut(s) 104, 113, 211, 327
Hin1II CATG 1 cut(s) 378
HinfI GANTC 1 cut(s) 120
Hpy188I TCNGA 2 cut(s) 186, 280
Hpy99I CGWCG 1 cut(s) 120
HpyAV CCTTC 2 cut(s) 37, 359
HpyCH4III ACNGT 2 cut(s) 225, 313
HpyF10VI GCNNNNNNNGC 5 cut(s) 109, 112, 216, 332, 341
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 1 cut(s) 378
Kzo9I GATC 1 cut(s) 148
LguI GCTCTTC 1 cut(s) 294
LmnI GCTCC 2 cut(s) 179, 187
LpnPI CCDG 3 cut(s) 45, 81, 248
Lsp1109I GCAGC 2 cut(s) 197, 338
MaeI CTAG 1 cut(s) 305
MaeIII GTNAC 1 cut(s) 307
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 2 cut(s) 311, 332
MhlI GDGCHC 3 cut(s) 166, 184, 207
MluCI AATT 2 cut(s) 152, 349
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 9 cut(s) 69, 161, 170, 184, 234, 246, 316, 334, 372
MwoI GCNNNNNNNGC 5 cut(s) 109, 112, 216, 332, 341
NdeII GATC 1 cut(s) 148
NlaIII CATG 1 cut(s) 378
NlaIV GGNNCC 1 cut(s) 9
NmeAIII GCCGAG 1 cut(s) 186
NspV TTCGAA 1 cut(s) 197
PaeR7I CTCGAG 1 cut(s) 165
PciSI GCTCTTC 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PkrI GCNGC 4 cut(s) 105, 114, 212, 328
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
Psp124BI GAGCTC 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 9
PspXI VCTCGAGB 1 cut(s) 165
SacI GAGCTC 1 cut(s) 184
SapI GCTCTTC 1 cut(s) 294
SatI GCNGC 4 cut(s) 104, 113, 211, 327
Sau3AI GATC 1 cut(s) 148
SchI GAGTC 1 cut(s) 114
SduI GDGCHC 3 cut(s) 166, 184, 207
SetI ASST 7 cut(s) 29, 88, 172, 184, 195, 306, 383
Sfr274I CTCGAG 1 cut(s) 165
SfuI TTCGAA 1 cut(s) 197
SlaI CTCGAG 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 165
SmoI CTYRAG 1 cut(s) 165
Sse9I AATT 2 cut(s) 152, 349
SsiI CCGC 7 cut(s) 103, 106, 112, 142, 213, 260, 335
SspMI CTAG 1 cut(s) 305
SstI GAGCTC 1 cut(s) 184
TaaI ACNGT 2 cut(s) 225, 313
TaqI TCGA 4 cut(s) 147, 166, 197, 315
TasI AATT 2 cut(s) 152, 349
TauI GCSGC 2 cut(s) 106, 115
TscAI CASTG 3 cut(s) 166, 242, 336
TseI GCWGC 2 cut(s) 210, 326
TspDTI ATGAA 1 cut(s) 333
TspRI CASTG 3 cut(s) 166, 242, 336
XhoI CTCGAG 1 cut(s) 165
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.