Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0016466

Physical Location & Seq

Genomic Coordinates Forward (+)

2211665 .. 2215826

Gene Structure 4162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG032800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAAATCTCAACTCAAAAGATGCTAACTATGAGCCTTATTCATAGGATTCAAACGAAGCCTTCACCTTTGCCTCCTCCTTCGCAGCCTCGAGTGCTTCAATCAAGTTCTTCAATCACTAAATACCCAGATCGAATCTCCAAGACCTTCCCCGTGAAACTGAAGCAAAAACCCAAGCCTCGCACCCCAGAGCATACTCCCAAAGCTCTCGCTTCAAGAAGGCAGTGGCGGCGGCGGCGACCCCGCCCGCTATGTTCTCCGCGATTCGATCAATTCGGCGGTGCTTGCTGTTATGGAGGAGCTCCGATTGCGGTTTCGAAAGGGCTCGGCTGTTGTGGCTTGCTGTCTCTGCACCGGCCGAGGTTGTGGTGCCGGCCAATTGTAGCCGTTGCTGCCTCGCAAGATGAATCGGTAAAGCTCCAATTTTTGGTTTTAATTGGGATATTTGCTTTATCTGGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

154

Amino Acids

17.15

Weight (kDa)

10.98

Isoelectric Point (pI)

70.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016466)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014093 RLG00000017841
rosa_multiflora	Rmu_sc0000299.1_g000004 Rmu_sc0039748.1_g000001 Rmu_sc0040042.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117020
rosa_samantha	Rh3AG032800 Rh3CG031900 Rh3DG032800 Rh4BG338100 Rh4CG353500 Rh5BG141300 Rh5DG474400 Rh6BG150500 Rh7DG249700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	369
AccB7I	CCANNNNNTGG	1 cut(s)	427
AccII	CGCG	1 cut(s)	262
AciI	CCGC	8 cut(s)	229, 232, 235, 244, 248, 260, 279, 311
AcoI	YGGCCR	2 cut(s)	356, 374
AcuI	CTGAAG	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	4 cut(s)	53, 101, 114, 216
AluBI	AGCT	3 cut(s)	206, 302, 418
AluI	AGCT	3 cut(s)	206, 302, 418
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	1 cut(s)	351
Ama87I	CYCGRG	1 cut(s)	90
AoxI	GGCC	2 cut(s)	356, 374
ApeKI	GCWGC	2 cut(s)	85, 392
AsuHPI	GGTGA	1 cut(s)	57
AsuII	TTCGAA	1 cut(s)	317
AvaI	CYCGRG	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	369
BanII	GRGCYC	2 cut(s)	304, 327
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	2 cut(s)	97, 379
BceAI	ACGGC	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	351
BisI	GCNGC	5 cut(s)	86, 230, 233, 236, 393
BlsI	GCNGC	5 cut(s)	87, 231, 234, 237, 394
BmeT110I	CYCGRG	1 cut(s)	90
BmiI	GGNNCC	1 cut(s)	371
BmsI	GCATC	1 cut(s)	12
Bpu14I	TTCGAA	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	359
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse118I	RCCGGY	2 cut(s)	354, 372
BseDI	CCNNGG	1 cut(s)	359
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseRI	GAGGAG	2 cut(s)	66, 312
BseX3I	CGGCCG	1 cut(s)	356
BseXI	GCAGC	2 cut(s)	97, 379
BsgI	GTGCAG	1 cut(s)	335
Bsh1236I	CGCG	1 cut(s)	262
Bsh1285I	CGRYCG	1 cut(s)	359
BshFI	GGCC	2 cut(s)	358, 376
BshNI	GGYRCC	1 cut(s)	369
BsiEI	CGRYCG	1 cut(s)	359
BsiHKAI	GWGCWC	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	355, 373
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	1 cut(s)	351
BsnI	GGCC	2 cut(s)	358, 376
BsoBI	CYCGRG	1 cut(s)	90
Bsp119I	TTCGAA	1 cut(s)	317
Bsp1286I	GDGCHC	2 cut(s)	304, 327
Bsp143I	GATC	2 cut(s)	130, 268
BspACI	CCGC	8 cut(s)	229, 232, 235, 244, 248, 260, 279, 311
BspANI	GGCC	2 cut(s)	358, 376
BspFNI	CGCG	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	371
BspT104I	TTCGAA	1 cut(s)	317
BspT107I	GGYRCC	1 cut(s)	369
BsrFI	RCCGGY	2 cut(s)	354, 372
BssAI	RCCGGY	2 cut(s)	354, 372
BssECI	CCNNGG	1 cut(s)	359
BssMI	GATC	2 cut(s)	130, 268
BstBI	TTCGAA	1 cut(s)	317
BstC8I	GCNNGC	4 cut(s)	248, 286, 341, 374
BstFNI	CGCG	1 cut(s)	262
BstKTI	GATC	2 cut(s)	133, 271
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	2 cut(s)	130, 268
BstMCI	CGRYCG	1 cut(s)	359
BstMWI	GCNNNNNNNGC	8 cut(s)	94, 229, 235, 285, 308, 336, 349, 392
BstUI	CGCG	1 cut(s)	262
BstV1I	GCAGC	2 cut(s)	97, 379
BstZI	CGGCCG	1 cut(s)	356
BsuRI	GGCC	2 cut(s)	358, 376
BtsI	GCAGTG	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	230
Cac8I	GCNNGC	4 cut(s)	248, 286, 341, 374
Cfr10I	RCCGGY	2 cut(s)	354, 372
DpnI	GATC	2 cut(s)	132, 270
DpnII	GATC	2 cut(s)	130, 268
EaeI	YGGCCR	2 cut(s)	356, 374
EagI	CGGCCG	1 cut(s)	356
Ecl136II	GAGCTC	1 cut(s)	302
EclXI	CGGCCG	1 cut(s)	356
Eco24I	GRGCYC	2 cut(s)	304, 327
Eco52I	CGGCCG	1 cut(s)	356
Eco53kI	GAGCTC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	302
EcoT38I	GRGCYC	2 cut(s)	304, 327
FaiI	YATR	5 cut(s)	32, 45, 195, 253, 294
FauI	CCCGC	2 cut(s)	251, 255
Fnu4HI	GCNGC	5 cut(s)	86, 230, 233, 236, 393
FriOI	GRGCYC	2 cut(s)	304, 327
Fsp4HI	GCNGC	5 cut(s)	86, 230, 233, 236, 393
GluI	GCNGC	5 cut(s)	86, 230, 233, 236, 393
HaeIII	GGCC	2 cut(s)	358, 376
HapII	CCGG	2 cut(s)	355, 373
HinfI	GANTC	4 cut(s)	49, 135, 264, 407
HpaII	CCGG	2 cut(s)	355, 373
HphI	GGTGA	1 cut(s)	57
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	2 cut(s)	216, 456
HpyAV	CCTTC	4 cut(s)	72, 90, 157, 213
HpyCH4V	TGCA	1 cut(s)	352
HpyF10VI	GCNNNNNNNGC	8 cut(s)	94, 229, 235, 285, 308, 336, 349, 392
KroI	GCCGGC	1 cut(s)	372
KroNI	GCCGGC	1 cut(s)	374
Kzo9I	GATC	2 cut(s)	130, 268
LmnI	GCTCC	3 cut(s)	299, 307, 423
LpnPI	CCDG	5 cut(s)	141, 201, 368, 386, 441
Lsp1109I	GCAGC	2 cut(s)	97, 379
LweI	GCATC	1 cut(s)	12
MalI	GATC	2 cut(s)	132, 270
MboI	GATC	2 cut(s)	130, 268
MboII	GAAGA	1 cut(s)	102
MfeI	CAATTG	1 cut(s)	378
MhlI	GDGCHC	2 cut(s)	304, 327
MluCI	AATT	4 cut(s)	272, 378, 422, 435
MnlI	CCTC	7 cut(s)	84, 87, 99, 189, 290, 354, 406
MroNI	GCCGGC	1 cut(s)	372
MseI	TTAA	1 cut(s)	434
MspI	CCGG	2 cut(s)	355, 373
MunI	CAATTG	1 cut(s)	378
MvnI	CGCG	1 cut(s)	262
MwoI	GCNNNNNNNGC	8 cut(s)	94, 229, 235, 285, 308, 336, 349, 392
NaeI	GCCGGC	1 cut(s)	374
NdeII	GATC	2 cut(s)	130, 268
NgoMIV	GCCGGC	1 cut(s)	372
NlaIV	GGNNCC	1 cut(s)	371
NmeAIII	GCCGAG	2 cut(s)	306, 384
NspV	TTCGAA	1 cut(s)	317
PaeR7I	CTCGAG	1 cut(s)	90
PdiI	GCCGGC	1 cut(s)	374
PfeI	GAWTC	4 cut(s)	49, 135, 264, 407
PflMI	CCANNNNNTGG	1 cut(s)	427
PkrI	GCNGC	5 cut(s)	87, 231, 234, 237, 394
Psp124BI	GAGCTC	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	371
PspXI	VCTCGAGB	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	304
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	5 cut(s)	86, 230, 233, 236, 393
Sau3AI	GATC	2 cut(s)	130, 268
SduI	GDGCHC	2 cut(s)	304, 327
SetI	ASST	6 cut(s)	70, 149, 208, 304, 365, 420
SfaNI	GCATC	1 cut(s)	12
Sfr274I	CTCGAG	1 cut(s)	90
SfuI	TTCGAA	1 cut(s)	317
SlaI	CTCGAG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	4 cut(s)	272, 378, 422, 435
SsiI	CCGC	8 cut(s)	229, 232, 235, 244, 248, 260, 279, 311
SstI	GAGCTC	1 cut(s)	304
TaqI	TCGA	4 cut(s)	91, 133, 267, 317
TasI	AATT	4 cut(s)	272, 378, 422, 435
TauI	GCSGC	3 cut(s)	232, 235, 238
TfiI	GAWTC	4 cut(s)	49, 135, 264, 407
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	1 cut(s)	230
TseI	GCWGC	2 cut(s)	85, 392
TspDTI	ATGAA	2 cut(s)	32, 420
TspRI	CASTG	1 cut(s)	230
Van91I	CCANNNNNTGG	1 cut(s)	427
XhoI	CTCGAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.