Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0016466

Physical Location & Seq

Genomic Coordinates Forward (+)

25863712 .. 25897051

Gene Structure 33340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG249700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTGCAACCGCTCCAAGACCTTCGTCGCACCCCAGAGCATACTCCCAAAGCTCTCGCTTCAAGAAGGTGGCGGCGGCGGCGACTCAGCTCGGCGTGTTCTCGGCGGTTCGATCAATTCGTCGGTGCTCGCGATTATAGAGGAGCTCTGATTGCAGTTTCGAAAGGGCTCGACTGCGGTGGCTTGCTGTCTCTGCATCGGCGAAGGTTGTGGTGTCGGCCAATTGTAGCAGTCGTTGCCTCGCAAGACGAATCGCTTTGGGTATACAAGTTTTCTGAAACCCGTCTCTCAACAAGAACACAATGTGACCAAATTTGCTTCACTTGCCCAGTTTTAAGGAACCATCTCCAAGCACCTCTTGAGTATACAAGTTTGGGTTATTGCTCGGTCGGTCGCACTCTGCAATTTTCGGCTTATCTTTTTATCCCTCTTGCCTTGCTGCGAAAAGGTTTCTGCAATAGCTTGAAGCTCTGGAGTGATCCCTATAGGAAAATTCTTTTGGTGGTATCTAAATCCACAAGACTACAAGAAATTTTACCATACGCATCATCAAAACAAGAAATGCAGTACAGAAGTAACGAGATGGGAACGATTTTTGAGTACAAAATAGGCAGTTTTCGCCAGATGCTGGTCGGCTTGATTTCAGTCAACAGAAAGCAGCAACGTACACAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

225

Amino Acids

26.12

Weight (kDa)

10.32

Isoelectric Point (pI)

61.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016466)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014093 RLG00000017841
rosa_multiflora	Rmu_sc0000299.1_g000004 Rmu_sc0039748.1_g000001 Rmu_sc0040042.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117020
rosa_samantha	Rh3AG032800 Rh3CG031900 Rh3DG032800 Rh4BG338100 Rh4CG353500 Rh5BG141300 Rh5DG474400 Rh6BG150500 Rh7DG249700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	628
AccBSI	CCGCTC	1 cut(s)	13
AccI	GTMKAC	2 cut(s)	264, 365
AccII	CGCG	1 cut(s)	132
AciI	CCGC	6 cut(s)	11, 73, 76, 79, 106, 177
AclWI	GGATC	1 cut(s)	473
AcoI	YGGCCR	1 cut(s)	218
AcsI	RAATTY	3 cut(s)	312, 492, 531
AdeI	CACNNNGTG	1 cut(s)	305
AfaI	GTAC	3 cut(s)	569, 602, 667
AfiI	CCNNNNNNNGG	1 cut(s)	628
AgsI	TTSAA	2 cut(s)	63, 466
AjuI	GAANNNNNNNTTGG	2 cut(s)	482, 514
AluBI	AGCT	5 cut(s)	53, 90, 146, 462, 469
AluI	AGCT	5 cut(s)	53, 90, 146, 462, 469
Alw21I	GWGCWC	2 cut(s)	130, 148
Alw26I	GTCTC	2 cut(s)	195, 290
AlwI	GGATC	1 cut(s)	473
AlwNI	CAGNNNCTG	1 cut(s)	628
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	2 cut(s)	439, 658
ApoI	RAATTY	3 cut(s)	312, 492, 531
AsuII	TTCGAA	1 cut(s)	161
BanII	GRGCYC	2 cut(s)	148, 171
Bbv12I	GWGCWC	2 cut(s)	130, 148
BbvI	GCAGC	2 cut(s)	426, 670
BccI	CCATC	2 cut(s)	351, 577
BcoDI	GTCTC	2 cut(s)	195, 290
BfmI	CTRYAG	1 cut(s)	484
BisI	GCNGC	5 cut(s)	74, 77, 80, 440, 659
BlsI	GCNGC	5 cut(s)	75, 78, 81, 441, 660
BmiI	GGNNCC	1 cut(s)	341
BmrI	ACTGGG	1 cut(s)	323
BmsI	GCATC	3 cut(s)	205, 554, 615
BmuI	ACTGGG	1 cut(s)	323
BoxI	GACNNNNGTC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	493
Bpu14I	TTCGAA	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse1I	ACTGG	1 cut(s)	329
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMII	CTCAG	1 cut(s)	100
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	426, 670
Bsh1236I	CGCG	1 cut(s)	132
Bsh1285I	CGRYCG	2 cut(s)	390, 394
BshFI	GGCC	1 cut(s)	220
BsiEI	CGRYCG	2 cut(s)	390, 394
BsiHKAI	GWGCWC	2 cut(s)	130, 148
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmAI	GTCTC	2 cut(s)	195, 290
BsmBI	CGTCTC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	220
Bsp119I	TTCGAA	1 cut(s)	161
Bsp1286I	GDGCHC	3 cut(s)	130, 148, 171
Bsp143I	GATC	2 cut(s)	112, 478
Bsp68I	TCGCGA	1 cut(s)	132
BspACI	CCGC	6 cut(s)	11, 73, 76, 79, 106, 177
BspANI	GGCC	1 cut(s)	220
BspCNI	CTCAG	1 cut(s)	99
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	341
BspPI	GGATC	1 cut(s)	473
BspT104I	TTCGAA	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	329
BssMI	GATC	2 cut(s)	112, 478
BssNAI	GTATAC	2 cut(s)	265, 366
Bst1107I	GTATAC	2 cut(s)	265, 366
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstBI	TTCGAA	1 cut(s)	161
BstC8I	GCNNGC	2 cut(s)	130, 185
BstDEI	CTNAG	1 cut(s)	86
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	2 cut(s)	115, 481
BstMAI	GTCTC	2 cut(s)	195, 290
BstMBI	GATC	2 cut(s)	112, 478
BstMCI	CGRYCG	2 cut(s)	390, 394
BstMWI	GCNNNNNNNGC	6 cut(s)	79, 152, 193, 236, 324, 618
BstPAI	GACNNNNGTC	1 cut(s)	24
BstSFI	CTRYAG	1 cut(s)	484
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	426, 670
BstZ17I	GTATAC	2 cut(s)	265, 366
BsuRI	GGCC	1 cut(s)	220
BtuMI	TCGCGA	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	130, 185
CaiI	CAGNNNCTG	1 cut(s)	628
Csp6I	GTAC	3 cut(s)	568, 601, 666
CviQI	GTAC	3 cut(s)	568, 601, 666
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	2 cut(s)	114, 480
DpnII	GATC	2 cut(s)	112, 478
DraIII	CACNNNGTG	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	218
Ecl136II	GAGCTC	1 cut(s)	146
Eco24I	GRGCYC	2 cut(s)	148, 171
Eco53kI	GAGCTC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	146
EcoT38I	GRGCYC	2 cut(s)	148, 171
Esp3I	CGTCTC	1 cut(s)	290
FaiI	YATR	7 cut(s)	42, 138, 265, 366, 486, 541, 676
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FblI	GTMKAC	2 cut(s)	264, 365
Fnu4HI	GCNGC	5 cut(s)	74, 77, 80, 440, 659
FriOI	GRGCYC	2 cut(s)	148, 171
Fsp4HI	GCNGC	5 cut(s)	74, 77, 80, 440, 659
GluI	GCNGC	5 cut(s)	74, 77, 80, 440, 659
GsuI	CTGGAG	1 cut(s)	493
HaeIII	GGCC	1 cut(s)	220
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HinfI	GANTC	2 cut(s)	84, 251
Hpy166II	GTNNAC	4 cut(s)	265, 366, 649, 668
Hpy188I	TCNGA	2 cut(s)	150, 277
Hpy188III	TCNNGA	4 cut(s)	63, 131, 359, 472
Hpy8I	GTNNAC	4 cut(s)	265, 366, 649, 668
Hpy99I	CGWCG	2 cut(s)	30, 125
HpyAV	CCTTC	3 cut(s)	32, 60, 198
HpyCH4IV	ACGT	1 cut(s)	664
HpyCH4V	TGCA	6 cut(s)	7, 155, 196, 403, 456, 565
HpyF10VI	GCNNNNNNNGC	6 cut(s)	79, 152, 193, 236, 324, 618
HpyF3I	CTNAG	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	664
Kzo9I	GATC	2 cut(s)	112, 478
LmnI	GCTCC	2 cut(s)	18, 143
LpnPI	CCDG	5 cut(s)	48, 342, 457, 614, 635
Lsp1109I	GCAGC	2 cut(s)	426, 670
LweI	GCATC	3 cut(s)	205, 554, 615
MaeII	ACGT	1 cut(s)	664
MaeIII	GTNAC	2 cut(s)	305, 575
MalI	GATC	2 cut(s)	114, 480
MbiI	CCGCTC	1 cut(s)	13
MboI	GATC	2 cut(s)	112, 478
MfeI	CAATTG	1 cut(s)	222
MhlI	GDGCHC	3 cut(s)	130, 148, 171
MluCI	AATT	6 cut(s)	116, 222, 312, 404, 492, 531
MlyI	GAGTC	1 cut(s)	78
MnlI	CCTC	4 cut(s)	134, 250, 366, 438
MseI	TTAA	1 cut(s)	335
MunI	CAATTG	1 cut(s)	222
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	6 cut(s)	79, 152, 193, 236, 324, 618
NdeII	GATC	2 cut(s)	112, 478
NlaIV	GGNNCC	1 cut(s)	341
NmeAIII	GCCGAG	2 cut(s)	71, 82
NmuCI	GTSAC	1 cut(s)	305
NruI	TCGCGA	1 cut(s)	132
NspV	TTCGAA	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 129
PfeI	GAWTC	1 cut(s)	251
PflMI	CCANNNNNTGG	1 cut(s)	628
PkrI	GCNGC	5 cut(s)	75, 78, 81, 441, 660
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
PshAI	GACNNNNGTC	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	341
PstNI	CAGNNNCTG	1 cut(s)	628
RruI	TCGCGA	1 cut(s)	132
RsaI	GTAC	3 cut(s)	569, 602, 667
RsaNI	GTAC	3 cut(s)	568, 601, 666
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	335
SatI	GCNGC	5 cut(s)	74, 77, 80, 440, 659
Sau3AI	GATC	2 cut(s)	112, 478
SchI	GAGTC	1 cut(s)	78
SduI	GDGCHC	3 cut(s)	130, 148, 171
SfaNI	GCATC	3 cut(s)	205, 554, 615
SfcI	CTRYAG	1 cut(s)	484
SfuI	TTCGAA	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	6 cut(s)	116, 222, 312, 404, 492, 531
SsiI	CCGC	6 cut(s)	11, 73, 76, 79, 106, 177
SstI	GAGCTC	1 cut(s)	148
TaiI	ACGT	1 cut(s)	667
TaqI	TCGA	3 cut(s)	111, 161, 171
TaqII	GACCGA	2 cut(s)	376, 380
TasI	AATT	6 cut(s)	116, 222, 312, 404, 492, 531
TatI	WGTACW	2 cut(s)	567, 600
TauI	GCSGC	3 cut(s)	76, 79, 82
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	2 cut(s)	439, 658
Tsp45I	GTSAC	1 cut(s)	305
Van91I	CCANNNNNTGG	1 cut(s)	628
XapI	RAATTY	3 cut(s)	312, 492, 531
XmiI	GTMKAC	2 cut(s)	264, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.