Rh5DG474400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0016466
Physical Location & Seq
Reverse (-)
75045513 .. 75069188
23676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG474400.1

Sequence Viewer

Length: 342 bp
ATGATCGTTTTAGCAATTTCGACTCACCGGAGTGAAGCTGTGGTAATGCGGAGGAAGGAAACGCCGGAAACGGAAGCCCTGGACGGCGTCGGAGACGGAGCAATGCGTGTCGGTGGCGGATTGGTCAAAGAAAGCATTTTAAGGAACCATCTCCAAGCACCTCTTGAGTATACAAGTTCGGGTTATTGCTCGGTCGGTCGCACTCTGCAATTTTCGGCTTATCTTTTTATCCCTCTTGCCTTGCTGCGAAAAGGTTTCTGCAGTAGGTTGAAGCTCTGGAGTGATCCCTATAGGAAAATTCTTTTGGTGGTATCTAAATCCACAAGACTACAAGAGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.58

Weight (kDa)

9.69

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 170
AciI CCGC 2 cut(s) 49, 117
AclWI GGATC 1 cut(s) 278
AcsI RAATTY 1 cut(s) 297
AcyI GRCGYC 1 cut(s) 87
AgsI TTSAA 1 cut(s) 271
AjnI CCWGG 1 cut(s) 78
AjuI GAANNNNNNNTTGG 2 cut(s) 287, 319
AleI CACNNNNGTG 1 cut(s) 30
AluBI AGCT 2 cut(s) 38, 274
AluI AGCT 2 cut(s) 38, 274
Alw26I GTCTC 2 cut(s) 87, 329
AlwI GGATC 1 cut(s) 278
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 1 cut(s) 297
AsuHPI GGTGA 1 cut(s) 17
BbvI GCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 156
BceAI ACGGC 1 cut(s) 100
BciT130I CCWGG 1 cut(s) 80
BcoDI GTCTC 2 cut(s) 87, 329
BfmI CTRYAG 2 cut(s) 259, 289
BisI GCNGC 1 cut(s) 245
BlsI GCNGC 1 cut(s) 246
Bme1390I CCNGG 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 298
BpuEI CTTGAG 1 cut(s) 185
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 78
BsaWI WCCGGW 1 cut(s) 27
Bse3DI GCAATG 1 cut(s) 108
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 78
BseMI GCAATG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 231
Bsh1285I CGRYCG 2 cut(s) 195, 199
BsiEI CGRYCG 2 cut(s) 195, 199
BsiSI CCGG 2 cut(s) 28, 65
BsmAI GTCTC 2 cut(s) 87, 329
BsmBI CGTCTC 1 cut(s) 87
Bso31I GGTCTC 1 cut(s) 329
Bsp143I GATC 2 cut(s) 3, 283
BspACI CCGC 2 cut(s) 49, 117
BspLI GGNNCC 1 cut(s) 146
BspMAI CTGCAG 1 cut(s) 263
BspPI GGATC 1 cut(s) 278
BspTNI GGTCTC 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 2 cut(s) 3, 283
BssNAI GTATAC 1 cut(s) 171
BssNI GRCGYC 1 cut(s) 87
Bst1107I GTATAC 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 80
BstACI GRCGYC 1 cut(s) 87
BstKTI GATC 2 cut(s) 6, 286
BstMAI GTCTC 2 cut(s) 87, 329
BstMBI GATC 2 cut(s) 3, 283
BstMCI CGRYCG 2 cut(s) 195, 199
BstNI CCWGG 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 2 cut(s) 259, 289
BstV1I GCAGC 1 cut(s) 231
BstZ17I GTATAC 1 cut(s) 171
CseI GACGC 1 cut(s) 76
CviJI RGCY 4 cut(s) 38, 77, 218, 274
CviKI_1 RGCY 4 cut(s) 38, 77, 218, 274
DpnI GATC 2 cut(s) 5, 285
DpnII GATC 2 cut(s) 3, 283
EciI GGCGGA 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 78
Esp3I CGTCTC 1 cut(s) 87
FaiI YATR 2 cut(s) 171, 291
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FblI GTMKAC 1 cut(s) 170
Fnu4HI GCNGC 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 245
GluI GCNGC 1 cut(s) 245
GsuI CTGGAG 1 cut(s) 298
HapII CCGG 2 cut(s) 28, 65
HgaI GACGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 87
HinfI GANTC 1 cut(s) 22
HpaII CCGG 2 cut(s) 28, 65
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 1 cut(s) 92
Hpy188III TCNNGA 2 cut(s) 164, 277
Hpy8I GTNNAC 1 cut(s) 171
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 49
HpyCH4V TGCA 2 cut(s) 208, 261
Hsp92I GRCGYC 1 cut(s) 87
Kzo9I GATC 2 cut(s) 3, 283
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 5 cut(s) 41, 65, 78, 92, 262
Lsp1109I GCAGC 1 cut(s) 231
MalI GATC 2 cut(s) 5, 285
MboI GATC 2 cut(s) 3, 283
MluCI AATT 3 cut(s) 15, 209, 297
MlyI GAGTC 1 cut(s) 16
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 3 cut(s) 45, 171, 243
MseI TTAA 1 cut(s) 140
MslI CAYNNNNRTG 1 cut(s) 30
MspI CCGG 2 cut(s) 28, 65
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
NdeII GATC 2 cut(s) 3, 283
NlaIV GGNNCC 1 cut(s) 146
OliI CACNNNNGTG 1 cut(s) 30
PflFI GACNNNGTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 246
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 146
PstI CTGCAG 1 cut(s) 263
PsyI GACNNNGTC 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 30
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 1 cut(s) 245
Sau3AI GATC 2 cut(s) 3, 283
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 80
SetI ASST 6 cut(s) 40, 163, 256, 269, 276, 341
SfcI CTRYAG 2 cut(s) 259, 289
SmiMI CAYNNNNRTG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 3 cut(s) 15, 209, 297
SsiI CCGC 2 cut(s) 49, 117
StyD4I CCNGG 1 cut(s) 78
TaqI TCGA 1 cut(s) 20
TaqII GACCGA 2 cut(s) 181, 185
TasI AATT 3 cut(s) 15, 209, 297
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TseI GCWGC 1 cut(s) 244
TspGWI ACGGA 2 cut(s) 86, 111
Tth111I GACNNNGTC 1 cut(s) 86
XapI RAATTY 1 cut(s) 297
XmiI GTMKAC 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.