Rroxscaffold_2G00117020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016466
Physical Location & Seq
Forward (+)
44467949 .. 44469302
1354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00117020.1

Sequence Viewer

Length: 507 bp
ATGCGTGCCGGGAATCCATGGCAGAGCGAAGGCGAGGCTAAGGATCCTCCTTACAGCCTCCGCACGACGTTTCCGGCTTTCTGTTTTAGTTTTGTTTCAATTCCGGACACTTTGCCTTCCCTTCGCCCCACGCCAAAACCCAAGCCTCGCACCCCGAAGATACTCCCAAAGGTCTCGCTTCAAGAAGGTGGCGGCGGCGGCGACTCGGCTCGGCGTGTTCTCGGCGGTTCGATCAATTCGTCGGTGCTTGCGGTTATAGAGGAGCTCGATTGCAGTTTCAAAAGGGCTCGACTGCGGTGGCTTGCTGTCTCTGCACCGGCGAAGGTTGTGGTGCCGCCAATTGTAGCGATCGGCGCCTCGCAAGATGAATCGGATGGCGGTGGTCGGTGGTGGTGGAAAAGTCGATTCGGTTGTGGTGGTGGAAGAGCTAGTAGCGTGGATGAAGAGGCAGCGGTGGCGGTGGAGGCAAGAAATTGTTCGAGTAAGGAAGGAGAGCCATGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.0

Weight (kDa)

9.23

Isoelectric Point (pI)

62.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 331, 353
AccIII TCCGGA 1 cut(s) 103
AclWI GGATC 2 cut(s) 38, 51
AcyI GRCGYC 1 cut(s) 354
AgsI TTSAA 3 cut(s) 99, 182, 280
AluBI AGCT 2 cut(s) 265, 428
AluI AGCT 2 cut(s) 265, 428
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 2 cut(s) 178, 313
AlwI GGATC 2 cut(s) 38, 51
Aor13HI TCCGGA 1 cut(s) 103
ApeKI GCWGC 1 cut(s) 449
Asp700I GAANNNNTTC 1 cut(s) 475
AspLEI GCGC 1 cut(s) 356
AsuC2I CCSGG 1 cut(s) 10
BamHI GGATCC 1 cut(s) 43
BanI GGYRCC 2 cut(s) 331, 353
BanII GRGCYC 2 cut(s) 267, 289
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 461
BccI CCATC 1 cut(s) 368
BcnI CCSGG 1 cut(s) 10
BcoDI GTCTC 2 cut(s) 178, 313
BfaI CTAG 1 cut(s) 429
BfoI RGCGCY 1 cut(s) 357
BisI GCNGC 5 cut(s) 193, 196, 199, 335, 450
BlsI GCNGC 5 cut(s) 194, 197, 200, 336, 451
Bme1390I CCNGG 1 cut(s) 10
BmiI GGNNCC 3 cut(s) 45, 333, 355
BmrFI CCNGG 1 cut(s) 10
Bpu10I CCTNAGC 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 10
BsaHI GRCGYC 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 2 cut(s) 17, 497
BsaWI WCCGGW 1 cut(s) 103
Bse118I RCCGGY 1 cut(s) 316
BseAI TCCGGA 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 17, 497
BseGI GGATG 2 cut(s) 379, 445
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 461
BsgI GTGCAG 1 cut(s) 297
Bsh1285I CGRYCG 1 cut(s) 351
BshNI GGYRCC 2 cut(s) 331, 353
BsiEI CGRYCG 1 cut(s) 351
BsiHKAI GWGCWC 1 cut(s) 267
BsiSI CCGG 4 cut(s) 9, 74, 104, 317
BsmAI GTCTC 2 cut(s) 178, 313
Bso31I GGTCTC 1 cut(s) 178
Bsp1286I GDGCHC 2 cut(s) 267, 289
Bsp13I TCCGGA 1 cut(s) 103
Bsp143I GATC 3 cut(s) 43, 231, 348
Bsp19I CCATGG 2 cut(s) 17, 497
BspEI TCCGGA 1 cut(s) 103
BspLI GGNNCC 3 cut(s) 45, 333, 355
BspPI GGATC 2 cut(s) 38, 51
BspQI GCTCTTC 1 cut(s) 418
BspT107I GGYRCC 2 cut(s) 331, 353
BspTNI GGTCTC 1 cut(s) 178
BsrFI RCCGGY 1 cut(s) 316
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 2 cut(s) 17, 497
BssMI GATC 3 cut(s) 43, 231, 348
BssNI GRCGYC 1 cut(s) 354
BssT1I CCWWGG 2 cut(s) 17, 497
Bst6I CTCTTC 2 cut(s) 418, 438
BstACI GRCGYC 1 cut(s) 354
BstC8I GCNNGC 3 cut(s) 6, 249, 303
BstDEI CTNAG 1 cut(s) 39
BstDSI CCRYGG 2 cut(s) 17, 497
BstF5I GGATG 2 cut(s) 379, 445
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 1 cut(s) 356
BstKTI GATC 3 cut(s) 46, 234, 351
BstMAI GTCTC 2 cut(s) 178, 313
BstMBI GATC 3 cut(s) 43, 231, 348
BstMCI CGRYCG 1 cut(s) 351
BstMWI GCNNNNNNNGC 5 cut(s) 198, 311, 353, 455, 464
BstSCI CCNGG 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 461
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BtgI CCRYGG 2 cut(s) 17, 497
BtsCI GGATG 2 cut(s) 379, 445
Cac8I GCNNGC 3 cut(s) 6, 249, 303
CfoI GCGC 1 cut(s) 356
Cfr10I RCCGGY 1 cut(s) 316
CviAII CATG 2 cut(s) 18, 498
DdeI CTNAG 1 cut(s) 39
DinI GGCGCC 1 cut(s) 355
DpnI GATC 3 cut(s) 45, 233, 350
DpnII GATC 3 cut(s) 43, 231, 348
Eam1104I CTCTTC 2 cut(s) 418, 438
EarI CTCTTC 2 cut(s) 418, 438
Ecl136II GAGCTC 1 cut(s) 265
Eco130I CCWWGG 2 cut(s) 17, 497
Eco24I GRGCYC 2 cut(s) 267, 289
Eco31I GGTCTC 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 265
EcoICRI GAGCTC 1 cut(s) 265
EcoT14I CCWWGG 2 cut(s) 17, 497
EcoT38I GRGCYC 2 cut(s) 267, 289
EgeI GGCGCC 1 cut(s) 355
EheI GGCGCC 1 cut(s) 355
ErhI CCWWGG 2 cut(s) 17, 497
FaeI CATG 2 cut(s) 21, 501
FaiI YATR 3 cut(s) 19, 257, 499
FatI CATG 2 cut(s) 17, 497
Fnu4HI GCNGC 5 cut(s) 193, 196, 199, 335, 450
FokI GGATG 2 cut(s) 386, 452
FriOI GRGCYC 2 cut(s) 267, 289
Fsp4HI GCNGC 5 cut(s) 193, 196, 199, 335, 450
FspBI CTAG 1 cut(s) 429
GlaI GCGC 1 cut(s) 355
GluI GCNGC 5 cut(s) 193, 196, 199, 335, 450
HaeII RGCGCY 1 cut(s) 357
HapII CCGG 4 cut(s) 9, 74, 104, 317
HhaI GCGC 1 cut(s) 356
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 2 cut(s) 21, 501
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HinfI GANTC 4 cut(s) 13, 203, 368, 405
HpaII CCGG 4 cut(s) 9, 74, 104, 317
Hpy188I TCNGA 1 cut(s) 373
Hpy188III TCNNGA 2 cut(s) 104, 182
Hpy99I CGWCG 2 cut(s) 70, 244
HpyAV CCTTC 6 cut(s) 23, 126, 131, 179, 316, 482
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 2 cut(s) 273, 314
HpyF10VI GCNNNNNNNGC 5 cut(s) 198, 311, 353, 455, 464
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 68
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 2 cut(s) 21, 501
HspAI GCGC 1 cut(s) 354
KasI GGCGCC 1 cut(s) 353
Kpn2I TCCGGA 1 cut(s) 103
Kzo9I GATC 3 cut(s) 43, 231, 348
LguI GCTCTTC 1 cut(s) 418
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 4 cut(s) 22, 87, 117, 330
Lsp1109I GCAGC 1 cut(s) 461
MaeI CTAG 1 cut(s) 429
MaeII ACGT 1 cut(s) 68
MalI GATC 3 cut(s) 45, 233, 350
MboI GATC 3 cut(s) 43, 231, 348
MboII GAAGA 3 cut(s) 169, 435, 455
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 2 cut(s) 267, 289
MluCI AATT 4 cut(s) 99, 235, 339, 472
Mly113I GGCGCC 1 cut(s) 354
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 9 cut(s) 28, 57, 68, 156, 253, 367, 439, 457, 495
MroI TCCGGA 1 cut(s) 103
MroXI GAANNNNTTC 1 cut(s) 475
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 4 cut(s) 9, 74, 104, 317
MspR9I CCNGG 1 cut(s) 10
MunI CAATTG 1 cut(s) 339
MwoI GCNNNNNNNGC 5 cut(s) 198, 311, 353, 455, 464
NarI GGCGCC 1 cut(s) 354
NciI CCSGG 1 cut(s) 10
NcoI CCATGG 2 cut(s) 17, 497
NdeII GATC 3 cut(s) 43, 231, 348
NlaIII CATG 2 cut(s) 21, 501
NlaIV GGNNCC 3 cut(s) 45, 333, 355
NmeAIII GCCGAG 3 cut(s) 185, 190, 201
PciSI GCTCTTC 1 cut(s) 418
PcsI WCGNNNNNNNCGW 1 cut(s) 236
PdmI GAANNNNTTC 1 cut(s) 475
PfeI GAWTC 3 cut(s) 13, 368, 405
PkrI GCNGC 5 cut(s) 194, 197, 200, 336, 451
Ple19I CGATCG 1 cut(s) 351
PleI GAGTC 1 cut(s) 197
PluTI GGCGCC 1 cut(s) 357
PpsI GAGTC 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 267
PspN4I GGNNCC 3 cut(s) 45, 333, 355
PsuI RGATCY 1 cut(s) 43
PvuI CGATCG 1 cut(s) 351
SacI GAGCTC 1 cut(s) 267
SapI GCTCTTC 1 cut(s) 418
SatI GCNGC 5 cut(s) 193, 196, 199, 335, 450
Sau3AI GATC 3 cut(s) 43, 231, 348
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 10
SduI GDGCHC 2 cut(s) 267, 289
SetI ASST 7 cut(s) 71, 174, 190, 267, 327, 430, 506
SfoI GGCGCC 1 cut(s) 355
SgrAI CRCCGGYG 1 cut(s) 316
Sse9I AATT 4 cut(s) 99, 235, 339, 472
SspDI GGCGCC 1 cut(s) 353
SspMI CTAG 1 cut(s) 429
SstI GAGCTC 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 8
StyI CCWWGG 2 cut(s) 17, 497
TaiI ACGT 1 cut(s) 71
TaqI TCGA 5 cut(s) 230, 267, 289, 403, 479
TasI AATT 4 cut(s) 99, 235, 339, 472
TauI GCSGC 4 cut(s) 195, 198, 201, 337
TfiI GAWTC 3 cut(s) 13, 368, 405
TseI GCWGC 1 cut(s) 449
TspDTI ATGAA 2 cut(s) 381, 456
XmnI GAANNNNTTC 1 cut(s) 475
XspI CTAG 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.