Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0016466

Physical Location & Seq

Genomic Coordinates Forward (+)

2214232 .. 2215826

Gene Structure 1595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG031900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAATAGCTTCAATAAGATCCCCATGCATGCCATACCTCTGTTGCCTTCACCTTTGCCTCCTCCTTCGCAGCCTCGAGTGCTTCAATCAAGTTCTTCAATCACTAAATACCCAGATCGAATCTCCAAGACCTTCCCCGTGAAACTGAAGCAAAAACCCAAGCCTCGCACCCCAGAGCATACTCCCAAAGCTCTCGCTTCAAGAAGGCAGTGGCGGCGGCGGCGACCCCGCCCGCTATGTTCTCCGCGATTCGATCAATTCGGCGGTGCTTGCTGTTATGGAGGAGCTCCGATTGCGGTTTCGAAAGGGCTCGGCTGTTGTGGCTTGCTGTCTCTGCACCGGCCGAGGTTGTGGTGCCGGCCAATTGTAGCCGTTGCTGCCTCGCAAGATGAATCGGTAAAGCTCCAATTTTTGGTTTTAATTGGGATATTTGCTTTATCTGGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

149

Amino Acids

16.49

Weight (kDa)

10.98

Isoelectric Point (pI)

71.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016466)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014093 RLG00000017841
rosa_multiflora	Rmu_sc0000299.1_g000004 Rmu_sc0039748.1_g000001 Rmu_sc0040042.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117020
rosa_samantha	Rh3AG032800 Rh3CG031900 Rh3DG032800 Rh4BG338100 Rh4CG353500 Rh5BG141300 Rh5DG474400 Rh6BG150500 Rh7DG249700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	354
AccB7I	CCANNNNNTGG	1 cut(s)	412
AccII	CGCG	1 cut(s)	247
AciI	CCGC	8 cut(s)	214, 217, 220, 229, 233, 245, 264, 296
AclWI	GGATC	1 cut(s)	13
AcoI	YGGCCR	2 cut(s)	341, 359
AcuI	CTGAAG	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	412
AgsI	TTSAA	4 cut(s)	13, 86, 99, 201
AluBI	AGCT	4 cut(s)	9, 191, 287, 403
AluI	AGCT	4 cut(s)	9, 191, 287, 403
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	336
AlwI	GGATC	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	75
AoxI	GGCC	2 cut(s)	341, 359
ApeKI	GCWGC	2 cut(s)	70, 377
Asp700I	GAANNNNTTC	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	42
AsuII	TTCGAA	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	354
BanII	GRGCYC	2 cut(s)	289, 312
Bbv12I	GWGCWC	1 cut(s)	289
BbvI	GCAGC	2 cut(s)	82, 364
BceAI	ACGGC	1 cut(s)	356
BcoDI	GTCTC	1 cut(s)	336
BisI	GCNGC	5 cut(s)	71, 215, 218, 221, 378
BlsI	GCNGC	5 cut(s)	72, 216, 219, 222, 379
BmeT110I	CYCGRG	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	356
Bpu14I	TTCGAA	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse118I	RCCGGY	2 cut(s)	339, 357
BseDI	CCNNGG	1 cut(s)	344
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseRI	GAGGAG	2 cut(s)	51, 297
BseX3I	CGGCCG	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	82, 364
BsgI	GTGCAG	1 cut(s)	320
Bsh1236I	CGCG	1 cut(s)	247
Bsh1285I	CGRYCG	1 cut(s)	344
BshFI	GGCC	2 cut(s)	343, 361
BshNI	GGYRCC	1 cut(s)	354
BsiEI	CGRYCG	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	289
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	340, 358
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmAI	GTCTC	1 cut(s)	336
BsnI	GGCC	2 cut(s)	343, 361
BsoBI	CYCGRG	1 cut(s)	75
Bsp119I	TTCGAA	1 cut(s)	302
Bsp1286I	GDGCHC	2 cut(s)	289, 312
Bsp143I	GATC	3 cut(s)	18, 115, 253
BspACI	CCGC	8 cut(s)	214, 217, 220, 229, 233, 245, 264, 296
BspANI	GGCC	2 cut(s)	343, 361
BspFNI	CGCG	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	356
BspPI	GGATC	1 cut(s)	13
BspT104I	TTCGAA	1 cut(s)	302
BspT107I	GGYRCC	1 cut(s)	354
BsrFI	RCCGGY	2 cut(s)	339, 357
BssAI	RCCGGY	2 cut(s)	339, 357
BssECI	CCNNGG	1 cut(s)	344
BssMI	GATC	3 cut(s)	18, 115, 253
BstBI	TTCGAA	1 cut(s)	302
BstC8I	GCNNGC	5 cut(s)	30, 233, 271, 326, 359
BstFNI	CGCG	1 cut(s)	247
BstKTI	GATC	3 cut(s)	21, 118, 256
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	3 cut(s)	18, 115, 253
BstMCI	CGRYCG	1 cut(s)	344
BstMWI	GCNNNNNNNGC	8 cut(s)	79, 214, 220, 270, 293, 321, 334, 377
BstNSI	RCATGY	1 cut(s)	32
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	82, 364
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BstZI	CGGCCG	1 cut(s)	341
BsuRI	GGCC	2 cut(s)	343, 361
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	1 cut(s)	215
Cac8I	GCNNGC	5 cut(s)	30, 233, 271, 326, 359
Cfr10I	RCCGGY	2 cut(s)	339, 357
CviAII	CATG	2 cut(s)	25, 29
DpnI	GATC	3 cut(s)	20, 117, 255
DpnII	GATC	3 cut(s)	18, 115, 253
EaeI	YGGCCR	2 cut(s)	341, 359
EagI	CGGCCG	1 cut(s)	341
Ecl136II	GAGCTC	1 cut(s)	287
EclXI	CGGCCG	1 cut(s)	341
Eco24I	GRGCYC	2 cut(s)	289, 312
Eco52I	CGGCCG	1 cut(s)	341
Eco53kI	GAGCTC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	287
EcoT22I	ATGCAT	1 cut(s)	30
EcoT38I	GRGCYC	2 cut(s)	289, 312
FaeI	CATG	2 cut(s)	28, 32
FaiI	YATR	6 cut(s)	26, 30, 35, 180, 238, 279
FatI	CATG	2 cut(s)	24, 28
FauI	CCCGC	2 cut(s)	236, 240
Fnu4HI	GCNGC	5 cut(s)	71, 215, 218, 221, 378
FriOI	GRGCYC	2 cut(s)	289, 312
Fsp4HI	GCNGC	5 cut(s)	71, 215, 218, 221, 378
GluI	GCNGC	5 cut(s)	71, 215, 218, 221, 378
HaeIII	GGCC	2 cut(s)	343, 361
HapII	CCGG	2 cut(s)	340, 358
Hin1II	CATG	2 cut(s)	28, 32
HinfI	GANTC	3 cut(s)	120, 249, 392
HpaII	CCGG	2 cut(s)	340, 358
HphI	GGTGA	1 cut(s)	42
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	2 cut(s)	201, 441
HpyAV	CCTTC	4 cut(s)	57, 75, 142, 198
HpyCH4V	TGCA	2 cut(s)	28, 337
HpyF10VI	GCNNNNNNNGC	8 cut(s)	79, 214, 220, 270, 293, 321, 334, 377
Hsp92II	CATG	2 cut(s)	28, 32
KroI	GCCGGC	1 cut(s)	357
KroNI	GCCGGC	1 cut(s)	359
Kzo9I	GATC	3 cut(s)	18, 115, 253
LmnI	GCTCC	3 cut(s)	284, 292, 408
LpnPI	CCDG	5 cut(s)	126, 186, 353, 371, 426
Lsp1109I	GCAGC	2 cut(s)	82, 364
MalI	GATC	3 cut(s)	20, 117, 255
MboI	GATC	3 cut(s)	18, 115, 253
MboII	GAAGA	1 cut(s)	87
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	2 cut(s)	289, 312
MluCI	AATT	4 cut(s)	257, 363, 407, 420
MnlI	CCTC	8 cut(s)	48, 69, 72, 84, 174, 275, 339, 391
Mph1103I	ATGCAT	1 cut(s)	30
MroNI	GCCGGC	1 cut(s)	357
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	419
MspI	CCGG	2 cut(s)	340, 358
MunI	CAATTG	1 cut(s)	363
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	8 cut(s)	79, 214, 220, 270, 293, 321, 334, 377
NaeI	GCCGGC	1 cut(s)	359
NdeII	GATC	3 cut(s)	18, 115, 253
NgoMIV	GCCGGC	1 cut(s)	357
NlaIII	CATG	2 cut(s)	28, 32
NlaIV	GGNNCC	1 cut(s)	356
NmeAIII	GCCGAG	2 cut(s)	291, 369
NsiI	ATGCAT	1 cut(s)	30
NspI	RCATGY	1 cut(s)	32
NspV	TTCGAA	1 cut(s)	302
PaeI	GCATGC	1 cut(s)	32
PaeR7I	CTCGAG	1 cut(s)	75
PdiI	GCCGGC	1 cut(s)	359
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	120, 249, 392
PflMI	CCANNNNNTGG	1 cut(s)	412
PkrI	GCNGC	5 cut(s)	72, 216, 219, 222, 379
Psp124BI	GAGCTC	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	356
PspXI	VCTCGAGB	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	18
SacI	GAGCTC	1 cut(s)	289
SaqAI	TTAA	1 cut(s)	419
SatI	GCNGC	5 cut(s)	71, 215, 218, 221, 378
Sau3AI	GATC	3 cut(s)	18, 115, 253
SduI	GDGCHC	2 cut(s)	289, 312
SetI	ASST	8 cut(s)	11, 40, 55, 134, 193, 289, 350, 405
Sfr274I	CTCGAG	1 cut(s)	75
SfuI	TTCGAA	1 cut(s)	302
SlaI	CTCGAG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
SphI	GCATGC	1 cut(s)	32
Sse9I	AATT	4 cut(s)	257, 363, 407, 420
SsiI	CCGC	8 cut(s)	214, 217, 220, 229, 233, 245, 264, 296
SstI	GAGCTC	1 cut(s)	289
TaqI	TCGA	4 cut(s)	76, 118, 252, 302
TasI	AATT	4 cut(s)	257, 363, 407, 420
TauI	GCSGC	3 cut(s)	217, 220, 223
TfiI	GAWTC	3 cut(s)	120, 249, 392
Tru1I	TTAA	1 cut(s)	419
Tru9I	TTAA	1 cut(s)	419
TscAI	CASTG	1 cut(s)	215
TseI	GCWGC	2 cut(s)	70, 377
TspDTI	ATGAA	2 cut(s)	17, 405
TspRI	CASTG	1 cut(s)	215
Van91I	CCANNNNNTGG	1 cut(s)	412
XceI	RCATGY	1 cut(s)	32
XhoI	CTCGAG	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.