Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0016466

Physical Location & Seq

Genomic Coordinates Reverse (-)

14638772 .. 14639083

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG141300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAAACTTAAGCAAAAACCCAAGCCTCGCACCCCAGAGCATACTCCCAAAGCTCTCGCTTCAAGAAGGCAGCGGCGGCTGTGGCGACTCCGCTCGCCGTGTTCTCGGCAGTTCGATCAATTCGTCGGTGCTTGCTGTTATGGAGGAGCTCCGATTGTGGTTTCGAAAAGGCTCGGATGTGGTGGCTTGCTGTCTCTGCACCGGCGGAGGTTGTGGTGCCGGCCAATTGTAGCCGTCGTTGCCTCACAAGATGAATCGGTAAAGCTCCAATTTTTTGTTTTAATTGGGATATTTGCTTTATCTGGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

103

Amino Acids

11.64

Weight (kDa)

11.35

Isoelectric Point (pI)

67.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016466)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014093 RLG00000017841
rosa_multiflora	Rmu_sc0000299.1_g000004 Rmu_sc0039748.1_g000001 Rmu_sc0040042.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117020
rosa_samantha	Rh3AG032800 Rh3CG031900 Rh3DG032800 Rh4BG338100 Rh4CG353500 Rh5BG141300 Rh5DG474400 Rh6BG150500 Rh7DG249700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	216
AccBSI	CCGCTC	1 cut(s)	93
AciI	CCGC	4 cut(s)	73, 76, 91, 205
AcoI	YGGCCR	1 cut(s)	221
AflII	CTTAAG	1 cut(s)	8
AgsI	TTSAA	1 cut(s)	63
AluBI	AGCT	3 cut(s)	53, 149, 265
AluI	AGCT	3 cut(s)	53, 149, 265
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	198
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	1 cut(s)	70
AsuII	TTCGAA	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	82
BceAI	ACGGC	2 cut(s)	82, 218
BcoDI	GTCTC	1 cut(s)	198
BfrI	CTTAAG	1 cut(s)	8
BisI	GCNGC	3 cut(s)	71, 74, 77
BlsI	GCNGC	3 cut(s)	72, 75, 78
BmiI	GGNNCC	1 cut(s)	218
Bpu14I	TTCGAA	1 cut(s)	164
Bse118I	RCCGGY	2 cut(s)	201, 219
BseGI	GGATG	1 cut(s)	182
BseRI	GAGGAG	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	82
BsgI	GTGCAG	1 cut(s)	182
BshFI	GGCC	1 cut(s)	223
BshNI	GGYRCC	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	202, 220
BsmAI	GTCTC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	223
Bsp119I	TTCGAA	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	115
BspACI	CCGC	4 cut(s)	73, 76, 91, 205
BspANI	GGCC	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	218
BspT104I	TTCGAA	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	216
BspTI	CTTAAG	1 cut(s)	8
BsrBI	CCGCTC	1 cut(s)	93
BsrFI	RCCGGY	2 cut(s)	201, 219
BssAI	RCCGGY	2 cut(s)	201, 219
BssMI	GATC	1 cut(s)	115
BstAFI	CTTAAG	1 cut(s)	8
BstBI	TTCGAA	1 cut(s)	164
BstC8I	GCNNGC	4 cut(s)	95, 133, 188, 221
BstF5I	GGATG	1 cut(s)	182
BstKTI	GATC	1 cut(s)	118
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 82, 196, 239
BstV1I	GCAGC	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	182
Cac8I	GCNNGC	4 cut(s)	95, 133, 188, 221
Cfr10I	RCCGGY	2 cut(s)	201, 219
CviJI	RGCY	9 cut(s)	25, 53, 79, 149, 172, 186, 223, 233, 265
CviKI_1	RGCY	9 cut(s)	25, 53, 79, 149, 172, 186, 223, 233, 265
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	221
EciI	GGCGGA	1 cut(s)	220
Ecl136II	GAGCTC	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	151
FaiI	YATR	2 cut(s)	42, 141
Fnu4HI	GCNGC	3 cut(s)	71, 74, 77
FokI	GGATG	1 cut(s)	189
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	3 cut(s)	71, 74, 77
GluI	GCNGC	3 cut(s)	71, 74, 77
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	2 cut(s)	202, 220
HinfI	GANTC	2 cut(s)	87, 254
HpaII	CCGG	2 cut(s)	202, 220
Hpy188I	TCNGA	2 cut(s)	153, 176
Hpy188III	TCNNGA	2 cut(s)	63, 303
Hpy99I	CGWCG	2 cut(s)	128, 239
HpyAV	CCTTC	1 cut(s)	60
HpyCH4V	TGCA	1 cut(s)	199
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 82, 196, 239
KroI	GCCGGC	1 cut(s)	219
KroNI	GCCGGC	1 cut(s)	221
Kzo9I	GATC	1 cut(s)	115
LmnI	GCTCC	3 cut(s)	146, 154, 270
LpnPI	CCDG	4 cut(s)	48, 215, 233, 288
Lsp1109I	GCAGC	1 cut(s)	82
MalI	GATC	1 cut(s)	117
MbiI	CCGCTC	1 cut(s)	93
MboI	GATC	1 cut(s)	115
MfeI	CAATTG	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	4 cut(s)	119, 225, 269, 282
MlyI	GAGTC	1 cut(s)	81
MnlI	CCTC	4 cut(s)	36, 137, 201, 253
MroNI	GCCGGC	1 cut(s)	219
MseI	TTAA	2 cut(s)	9, 281
MspA1I	CMGCKG	1 cut(s)	73
MspCI	CTTAAG	1 cut(s)	8
MspI	CCGG	2 cut(s)	202, 220
MunI	CAATTG	1 cut(s)	225
MwoI	GCNNNNNNNGC	4 cut(s)	76, 82, 196, 239
NaeI	GCCGGC	1 cut(s)	221
NdeII	GATC	1 cut(s)	115
NgoMIV	GCCGGC	1 cut(s)	219
NlaIV	GGNNCC	1 cut(s)	218
NmeAIII	GCCGAG	1 cut(s)	85
NspV	TTCGAA	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PdiI	GCCGGC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	3 cut(s)	72, 75, 78
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
Psp124BI	GAGCTC	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	218
SacI	GAGCTC	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	9, 281
SatI	GCNGC	3 cut(s)	71, 74, 77
Sau3AI	GATC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	4 cut(s)	55, 151, 212, 267
SfuI	TTCGAA	1 cut(s)	164
SgrAI	CRCCGGYG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	4 cut(s)	119, 225, 269, 282
SsiI	CCGC	4 cut(s)	73, 76, 91, 205
SstI	GAGCTC	1 cut(s)	151
TaqI	TCGA	2 cut(s)	114, 164
TasI	AATT	4 cut(s)	119, 225, 269, 282
TauI	GCSGC	2 cut(s)	76, 79
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	2 cut(s)	9, 281
Tru9I	TTAA	2 cut(s)	9, 281
TseI	GCWGC	1 cut(s)	70
TspDTI	ATGAA	2 cut(s)	17, 267
Vha464I	CTTAAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.