Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0016466

Physical Location & Seq

Genomic Coordinates Forward (+)

2209235 .. 2215826

Gene Structure 6592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG032800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCCTTCACCTTTGCCTCCTCCTTCGCAGCCTCGAGTGCTTCAATCAAGTTCTTCAATCACTAAATACCCAGATCGAATCTCCAAGACCTTCCCCGTGAAACTGAAGCAAAAACCCAAGCCTCGCACCCCAGAGCATACTCCCAAAGCTCTCGCTTCAAGAAGGCAGTGGCGGCGGCGGCGACCCCGCCCGCTATGTTCTCCGCGATTCGATCAATTCGGCGGTGCTTGCTGTTATGGAGGAGCTCCGATTGCGGTTTCGAAAGGGCTCGGCTGTTGTGGCTTGCTGTCTCTGCACCGGCCGAGGTTGTGGTGCCGGCCAATTGTAGCCGTTGCTGCCTCGCAAGATGAATCGGTAAAGCTCCAATTTTTGGTTTTAATTGGGATATTTGCTTTATCTGGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

135

Amino Acids

14.91

Weight (kDa)

10.96

Isoelectric Point (pI)

75.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016466)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014093 RLG00000017841
rosa_multiflora	Rmu_sc0000299.1_g000004 Rmu_sc0039748.1_g000001 Rmu_sc0040042.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117020
rosa_samantha	Rh3AG032800 Rh3CG031900 Rh3DG032800 Rh4BG338100 Rh4CG353500 Rh5BG141300 Rh5DG474400 Rh6BG150500 Rh7DG249700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	312
AccB7I	CCANNNNNTGG	1 cut(s)	370
AccII	CGCG	1 cut(s)	205
AciI	CCGC	8 cut(s)	172, 175, 178, 187, 191, 203, 222, 254
AcoI	YGGCCR	2 cut(s)	299, 317
AcuI	CTGAAG	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	370
AgsI	TTSAA	3 cut(s)	44, 57, 159
AluBI	AGCT	3 cut(s)	149, 245, 361
AluI	AGCT	3 cut(s)	149, 245, 361
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	294
Ama87I	CYCGRG	1 cut(s)	33
AoxI	GGCC	2 cut(s)	299, 317
ApeKI	GCWGC	2 cut(s)	28, 335
AsuII	TTCGAA	1 cut(s)	260
AvaI	CYCGRG	1 cut(s)	33
BanI	GGYRCC	1 cut(s)	312
BanII	GRGCYC	2 cut(s)	247, 270
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	40, 322
BceAI	ACGGC	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	294
BisI	GCNGC	5 cut(s)	29, 173, 176, 179, 336
BlsI	GCNGC	5 cut(s)	30, 174, 177, 180, 337
BmeT110I	CYCGRG	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	314
Bpu14I	TTCGAA	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
Bse118I	RCCGGY	2 cut(s)	297, 315
BseDI	CCNNGG	1 cut(s)	302
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseRI	GAGGAG	2 cut(s)	9, 255
BseX3I	CGGCCG	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	40, 322
BsgI	GTGCAG	1 cut(s)	278
Bsh1236I	CGCG	1 cut(s)	205
Bsh1285I	CGRYCG	1 cut(s)	302
BshFI	GGCC	2 cut(s)	301, 319
BshNI	GGYRCC	1 cut(s)	312
BsiEI	CGRYCG	1 cut(s)	302
BsiHKAI	GWGCWC	1 cut(s)	247
BsiHKCI	CYCGRG	1 cut(s)	33
BsiSI	CCGG	2 cut(s)	298, 316
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmAI	GTCTC	1 cut(s)	294
BsnI	GGCC	2 cut(s)	301, 319
BsoBI	CYCGRG	1 cut(s)	33
Bsp119I	TTCGAA	1 cut(s)	260
Bsp1286I	GDGCHC	2 cut(s)	247, 270
Bsp143I	GATC	2 cut(s)	73, 211
BspACI	CCGC	8 cut(s)	172, 175, 178, 187, 191, 203, 222, 254
BspANI	GGCC	2 cut(s)	301, 319
BspFNI	CGCG	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	314
BspT104I	TTCGAA	1 cut(s)	260
BspT107I	GGYRCC	1 cut(s)	312
BsrFI	RCCGGY	2 cut(s)	297, 315
BssAI	RCCGGY	2 cut(s)	297, 315
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	2 cut(s)	73, 211
BstBI	TTCGAA	1 cut(s)	260
BstC8I	GCNNGC	4 cut(s)	191, 229, 284, 317
BstFNI	CGCG	1 cut(s)	205
BstKTI	GATC	2 cut(s)	76, 214
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	2 cut(s)	73, 211
BstMCI	CGRYCG	1 cut(s)	302
BstMWI	GCNNNNNNNGC	8 cut(s)	37, 172, 178, 228, 251, 279, 292, 335
BstUI	CGCG	1 cut(s)	205
BstV1I	GCAGC	2 cut(s)	40, 322
BstZI	CGGCCG	1 cut(s)	299
BsuRI	GGCC	2 cut(s)	301, 319
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	4 cut(s)	191, 229, 284, 317
Cfr10I	RCCGGY	2 cut(s)	297, 315
DpnI	GATC	2 cut(s)	75, 213
DpnII	GATC	2 cut(s)	73, 211
EaeI	YGGCCR	2 cut(s)	299, 317
EagI	CGGCCG	1 cut(s)	299
Ecl136II	GAGCTC	1 cut(s)	245
EclXI	CGGCCG	1 cut(s)	299
Eco24I	GRGCYC	2 cut(s)	247, 270
Eco52I	CGGCCG	1 cut(s)	299
Eco53kI	GAGCTC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	125
Eco88I	CYCGRG	1 cut(s)	33
EcoICRI	GAGCTC	1 cut(s)	245
EcoT38I	GRGCYC	2 cut(s)	247, 270
FaiI	YATR	3 cut(s)	138, 196, 237
FauI	CCCGC	2 cut(s)	194, 198
Fnu4HI	GCNGC	5 cut(s)	29, 173, 176, 179, 336
FriOI	GRGCYC	2 cut(s)	247, 270
Fsp4HI	GCNGC	5 cut(s)	29, 173, 176, 179, 336
GluI	GCNGC	5 cut(s)	29, 173, 176, 179, 336
HaeIII	GGCC	2 cut(s)	301, 319
HapII	CCGG	2 cut(s)	298, 316
HinfI	GANTC	3 cut(s)	78, 207, 350
HpaII	CCGG	2 cut(s)	298, 316
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	2 cut(s)	159, 399
HpyAV	CCTTC	4 cut(s)	15, 33, 100, 156
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	8 cut(s)	37, 172, 178, 228, 251, 279, 292, 335
KroI	GCCGGC	1 cut(s)	315
KroNI	GCCGGC	1 cut(s)	317
Kzo9I	GATC	2 cut(s)	73, 211
LmnI	GCTCC	3 cut(s)	242, 250, 366
LpnPI	CCDG	5 cut(s)	84, 144, 311, 329, 384
Lsp1109I	GCAGC	2 cut(s)	40, 322
MalI	GATC	2 cut(s)	75, 213
MboI	GATC	2 cut(s)	73, 211
MboII	GAAGA	1 cut(s)	45
MfeI	CAATTG	1 cut(s)	321
MhlI	GDGCHC	2 cut(s)	247, 270
MluCI	AATT	4 cut(s)	215, 321, 365, 378
MnlI	CCTC	7 cut(s)	27, 30, 42, 132, 233, 297, 349
MroNI	GCCGGC	1 cut(s)	315
MseI	TTAA	1 cut(s)	377
MspI	CCGG	2 cut(s)	298, 316
MunI	CAATTG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	205
MwoI	GCNNNNNNNGC	8 cut(s)	37, 172, 178, 228, 251, 279, 292, 335
NaeI	GCCGGC	1 cut(s)	317
NdeII	GATC	2 cut(s)	73, 211
NgoMIV	GCCGGC	1 cut(s)	315
NlaIV	GGNNCC	1 cut(s)	314
NmeAIII	GCCGAG	2 cut(s)	249, 327
NspV	TTCGAA	1 cut(s)	260
PaeR7I	CTCGAG	1 cut(s)	33
PdiI	GCCGGC	1 cut(s)	317
PfeI	GAWTC	3 cut(s)	78, 207, 350
PflMI	CCANNNNNTGG	1 cut(s)	370
PkrI	GCNGC	5 cut(s)	30, 174, 177, 180, 337
Psp124BI	GAGCTC	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	314
PspXI	VCTCGAGB	1 cut(s)	33
SacI	GAGCTC	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	377
SatI	GCNGC	5 cut(s)	29, 173, 176, 179, 336
Sau3AI	GATC	2 cut(s)	73, 211
SduI	GDGCHC	2 cut(s)	247, 270
SetI	ASST	6 cut(s)	13, 92, 151, 247, 308, 363
Sfr274I	CTCGAG	1 cut(s)	33
SfuI	TTCGAA	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	33
SmoI	CTYRAG	1 cut(s)	33
Sse9I	AATT	4 cut(s)	215, 321, 365, 378
SsiI	CCGC	8 cut(s)	172, 175, 178, 187, 191, 203, 222, 254
SstI	GAGCTC	1 cut(s)	247
TaqI	TCGA	4 cut(s)	34, 76, 210, 260
TasI	AATT	4 cut(s)	215, 321, 365, 378
TauI	GCSGC	3 cut(s)	175, 178, 181
TfiI	GAWTC	3 cut(s)	78, 207, 350
Tru1I	TTAA	1 cut(s)	377
Tru9I	TTAA	1 cut(s)	377
TscAI	CASTG	1 cut(s)	173
TseI	GCWGC	2 cut(s)	28, 335
TspDTI	ATGAA	1 cut(s)	363
TspRI	CASTG	1 cut(s)	173
Van91I	CCANNNNNTGG	1 cut(s)	370
XhoI	CTCGAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.