Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009861

Physical Location & Seq

Genomic Coordinates Forward (+)

27013035 .. 27014377

Gene Structure 1343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018217

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCGCGGGGGCGAGTAGTAGGCCATTCCGGCTACGTTATGGCCTTGAAGAAAACCGGCGCCGCCTTAAGCAATTACGGCCACGGAGAATCACAACAGACACAAGAAGAGCTACTCCTCCATCACGACCAGCGGCCACTGGACTCCACCACCACTGAGCAACTGCCTCCTCCTCCGCCGCTCGAACACCTCCCTCTGCCTCTGCCAACCTTCAATCCCAGCCCGCCGATCAAGCGCGCCACCAGCCTGCCGACGATGTTGACGAAGGTCTGGAAAACGAGGATGCAAGGGGTTAGGTTGCCCATTGTGACATCACCATGGAGTTCGTCGCGGCACCGCGAAGCCAGGTGGCAACACCAGCAGCAGCGGCAAGAACCAAGAAGACCTTGCAGAAACTCTGATTTTCATTTTCCGTCATCACCCACAACCACACCTCCACGAAAACTCGAACTCAAACTAAAATCCATTAATATCAAGTTATTTAACTATAACAAAACACCAGCAAGTTTACAGAGAACCAAACCAAATCCAAAACCAAATCCCAATCCCAATCCCAATTTCAATTTCAATTTCAATTTCGTCCTCCAAAATGAAGGACAGAGTCTTCCCGAAGCCTCGCTTGTTAAAGATCTGAAATCGGCGATGGAATGCGCCGCCGATCCTTTCATCGAGGTCAACTGCATCGGCGCCATCTGCCTGAAGAATCGGGGAGTGAAGTCAGAGAGAGTGGTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

246

Amino Acids

27.67

Weight (kDa)

9.97

Isoelectric Point (pI)

51.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25590
fragaria_vesca	FvH4_2g36270
malus_domestica	MD08G1120200.v1.1 MD15G1099400.v1.1
prunus_persica	Prupe.1G454100_v2.0.a1
pyrus_communis	pycom15g09140
rosa_chinensis	RchiOBHm_Chr6g0305621
rosa_laevigata	RLG00000010872 RLG00000018217
rosa_multiflora	Rmu_co8402805.1_g000001 Rmu_co8491339.1_g000001 Rmu_sc0001809.1_g000015
rosa_roxburghii	Rroxscaffold_7G00162520
rosa_rugosa	Rorug06G0342200
rosa_samantha	Rh2AG452300 Rh4BG182200 Rh6AG454100 Rh6BG447400 Rh6CG467800 Rh6DG454400
rosa_wichuraiana	Rw6G039590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	59, 333, 686
AccBSI	CCGCTC	1 cut(s)	181
AccII	CGCG	4 cut(s)	7, 237, 331, 339
AclWI	GGATC	1 cut(s)	653
AcoI	YGGCCR	2 cut(s)	79, 134
AcuI	CTGAAG	1 cut(s)	719
AcyI	GRCGYC	2 cut(s)	60, 687
AflII	CTTAAG	1 cut(s)	67
AgsI	TTSAA	5 cut(s)	49, 214, 562, 568, 574
AjnI	CCWGG	1 cut(s)	344
AjuI	GAANNNNNNNTTGG	4 cut(s)	542, 548, 574, 580
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
AlwI	GGATC	1 cut(s)	653
AoxI	GGCC	4 cut(s)	22, 42, 79, 134
ApeKI	GCWGC	2 cut(s)	361, 364
AseI	ATTAAT	1 cut(s)	468
AspLEI	GCGC	6 cut(s)	7, 62, 237, 239, 653, 689
AsuHPI	GGTGA	2 cut(s)	306, 411
BanI	GGYRCC	3 cut(s)	59, 333, 686
BbsI	GAAGAC	2 cut(s)	388, 596
BbvI	GCAGC	2 cut(s)	373, 376
BccI	CCATC	3 cut(s)	129, 637, 698
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	346
BfoI	RGCGCY	2 cut(s)	63, 690
BfrI	CTTAAG	1 cut(s)	67
BglI	GCCNNNNNGGC	1 cut(s)	30
BglII	AGATCT	1 cut(s)	628
BisI	GCNGC	8 cut(s)	63, 134, 179, 332, 362, 365, 368, 654
BlsI	GCNGC	8 cut(s)	64, 135, 180, 333, 363, 366, 369, 655
Bme1390I	CCNGG	1 cut(s)	346
BmiI	GGNNCC	3 cut(s)	61, 335, 688
BmrFI	CCNGG	1 cut(s)	346
BmsI	GCATC	2 cut(s)	273, 690
BoxI	GACNNNNGTC	1 cut(s)	266
BpiI	GAAGAC	2 cut(s)	388, 596
BsaHI	GRCGYC	2 cut(s)	60, 687
BsaJI	CCNNGG	2 cut(s)	82, 317
BsaXI	ACNNNNNCTCC	2 cut(s)	418, 448
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	346
BseDI	CCNNGG	2 cut(s)	82, 317
BseGI	GGATG	1 cut(s)	288
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	144
BsePI	GCGCGC	1 cut(s)	235
BseRI	GAGGAG	3 cut(s)	107, 159, 162
BseXI	GCAGC	2 cut(s)	373, 376
BseYI	CCCAGC	1 cut(s)	218
Bsh1236I	CGCG	4 cut(s)	7, 237, 331, 339
BshFI	GGCC	4 cut(s)	24, 44, 81, 136
BshNI	GGYRCC	3 cut(s)	59, 333, 686
BsiSI	CCGG	2 cut(s)	30, 57
BsmI	GAATGC	1 cut(s)	653
BsnI	GGCC	4 cut(s)	24, 44, 81, 136
Bsp143I	GATC	3 cut(s)	228, 628, 658
Bsp19I	CCATGG	1 cut(s)	317
BspANI	GGCC	4 cut(s)	24, 44, 81, 136
BspCNI	CTCAG	1 cut(s)	148
BspFNI	CGCG	4 cut(s)	7, 237, 331, 339
BspLI	GGNNCC	3 cut(s)	61, 335, 688
BspPI	GGATC	1 cut(s)	653
BspQI	GCTCTTC	1 cut(s)	102
BspT107I	GGYRCC	3 cut(s)	59, 333, 686
BspTI	CTTAAG	1 cut(s)	67
BsrBI	CCGCTC	1 cut(s)	181
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	144
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	82, 317
BssHII	GCGCGC	1 cut(s)	235
BssMI	GATC	3 cut(s)	228, 628, 658
BssNI	GRCGYC	2 cut(s)	60, 687
BssT1I	CCWWGG	1 cut(s)	317
Bst2UI	CCWGG	1 cut(s)	346
Bst6I	CTCTTC	1 cut(s)	102
BstACI	GRCGYC	2 cut(s)	60, 687
BstAFI	CTTAAG	1 cut(s)	67
BstC8I	GCNNGC	3 cut(s)	224, 237, 248
BstDEI	CTNAG	1 cut(s)	156
BstDSI	CCRYGG	2 cut(s)	82, 317
BstF5I	GGATG	1 cut(s)	288
BstFNI	CGCG	4 cut(s)	7, 237, 331, 339
BstH2I	RGCGCY	2 cut(s)	63, 690
BstHHI	GCGC	6 cut(s)	7, 62, 237, 239, 653, 689
BstKTI	GATC	3 cut(s)	231, 631, 661
BstMBI	GATC	3 cut(s)	228, 628, 658
BstMWI	GCNNNNNNNGC	7 cut(s)	30, 78, 232, 243, 358, 367, 693
BstNI	CCWGG	1 cut(s)	346
BstPAI	GACNNNNGTC	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	344
BstUI	CGCG	4 cut(s)	7, 237, 331, 339
BstV1I	GCAGC	2 cut(s)	373, 376
BstV2I	GAAGAC	2 cut(s)	388, 596
BstX2I	RGATCY	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	628
BsuRI	GGCC	4 cut(s)	24, 44, 81, 136
BtgI	CCRYGG	2 cut(s)	82, 317
BtgZI	GCGATG	1 cut(s)	656
BtsCI	GGATG	1 cut(s)	288
BtsIMutI	CAGTG	2 cut(s)	137, 153
Cac8I	GCNNGC	3 cut(s)	224, 237, 248
CfoI	GCGC	6 cut(s)	7, 62, 237, 239, 653, 689
Cfr10I	RCCGGY	1 cut(s)	56
CviAII	CATG	1 cut(s)	318
DdeI	CTNAG	1 cut(s)	156
DinI	GGCGCC	2 cut(s)	61, 688
DpnI	GATC	3 cut(s)	230, 630, 660
DpnII	GATC	3 cut(s)	228, 628, 658
EaeI	YGGCCR	2 cut(s)	79, 134
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
EciI	GGCGGA	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	317
Eco57I	CTGAAG	1 cut(s)	719
EcoRII	CCWGG	1 cut(s)	344
EcoT14I	CCWWGG	1 cut(s)	317
EgeI	GGCGCC	2 cut(s)	61, 688
EheI	GGCGCC	2 cut(s)	61, 688
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	1 cut(s)	321
FaiI	YATR	3 cut(s)	41, 319, 489
FalI	AAGNNNNNCTT	4 cut(s)	370, 402, 603, 635
FatI	CATG	1 cut(s)	317
FauI	CCCGC	1 cut(s)	231
Fnu4HI	GCNGC	8 cut(s)	63, 134, 179, 332, 362, 365, 368, 654
FokI	GGATG	1 cut(s)	295
Fsp4HI	GCNGC	8 cut(s)	63, 134, 179, 332, 362, 365, 368, 654
GlaI	GCGC	6 cut(s)	6, 61, 236, 238, 652, 688
GluI	GCNGC	8 cut(s)	63, 134, 179, 332, 362, 365, 368, 654
GsaI	CCCAGC	1 cut(s)	222
HaeII	RGCGCY	2 cut(s)	63, 690
HaeIII	GGCC	4 cut(s)	24, 44, 81, 136
HapII	CCGG	2 cut(s)	30, 57
HhaI	GCGC	6 cut(s)	7, 62, 237, 239, 653, 689
Hin1I	GRCGYC	2 cut(s)	60, 687
Hin1II	CATG	1 cut(s)	321
Hin6I	GCGC	6 cut(s)	5, 60, 235, 237, 651, 687
HinP1I	GCGC	6 cut(s)	5, 60, 235, 237, 651, 687
HincII	GTYRAC	2 cut(s)	261, 676
HindII	GTYRAC	2 cut(s)	261, 676
HinfI	GANTC	4 cut(s)	89, 143, 601, 703
HpaII	CCGG	2 cut(s)	30, 57
HphI	GGTGA	2 cut(s)	306, 411
Hpy166II	GTNNAC	3 cut(s)	261, 509, 676
Hpy188I	TCNGA	3 cut(s)	400, 633, 721
Hpy188III	TCNNGA	3 cut(s)	125, 271, 608
Hpy8I	GTNNAC	3 cut(s)	261, 509, 676
Hpy99I	CGWCG	2 cut(s)	256, 331
HpyAV	CCTTC	3 cut(s)	220, 259, 587
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	3 cut(s)	286, 390, 681
HpyF10VI	GCNNNNNNNGC	7 cut(s)	30, 78, 232, 243, 358, 367, 693
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	36
Hsp92I	GRCGYC	2 cut(s)	60, 687
Hsp92II	CATG	1 cut(s)	321
HspAI	GCGC	6 cut(s)	5, 60, 235, 237, 651, 687
KasI	GGCGCC	2 cut(s)	59, 686
Kzo9I	GATC	3 cut(s)	228, 628, 658
LguI	GCTCTTC	1 cut(s)	102
Lsp1109I	GCAGC	2 cut(s)	373, 376
LweI	GCATC	2 cut(s)	273, 690
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	3 cut(s)	230, 630, 660
MbiI	CCGCTC	1 cut(s)	181
MboI	GATC	3 cut(s)	228, 628, 658
MboII	GAAGA	5 cut(s)	61, 119, 393, 596, 712
MflI	RGATCY	1 cut(s)	628
MluCI	AATT	5 cut(s)	73, 556, 562, 568, 574
Mly113I	GGCGCC	2 cut(s)	60, 687
MlyI	GAGTC	2 cut(s)	137, 610
MseI	TTAA	4 cut(s)	68, 468, 483, 624
MslI	CAYNNNNRTG	1 cut(s)	316
MspA1I	CMGCKG	2 cut(s)	133, 367
MspCI	CTTAAG	1 cut(s)	67
MspI	CCGG	2 cut(s)	30, 57
MspR9I	CCNGG	1 cut(s)	346
Mva1269I	GAATGC	1 cut(s)	653
MvaI	CCWGG	1 cut(s)	346
MvnI	CGCG	4 cut(s)	7, 237, 331, 339
MwoI	GCNNNNNNNGC	7 cut(s)	30, 78, 232, 243, 358, 367, 693
NarI	GGCGCC	2 cut(s)	60, 687
NcoI	CCATGG	1 cut(s)	317
NdeII	GATC	3 cut(s)	228, 628, 658
NlaIII	CATG	1 cut(s)	321
NlaIV	GGNNCC	3 cut(s)	61, 335, 688
NmuCI	GTSAC	1 cut(s)	307
PauI	GCGCGC	1 cut(s)	235
PciSI	GCTCTTC	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PctI	GAATGC	1 cut(s)	653
PfeI	GAWTC	2 cut(s)	89, 703
PflFI	GACNNNGTC	1 cut(s)	600
PkrI	GCNGC	8 cut(s)	64, 135, 180, 333, 363, 366, 369, 655
PleI	GAGTC	2 cut(s)	137, 609
PluTI	GGCGCC	2 cut(s)	63, 690
PpsI	GAGTC	2 cut(s)	137, 609
PshAI	GACNNNNGTC	1 cut(s)	266
PshBI	ATTAAT	1 cut(s)	468
Psp6I	CCWGG	1 cut(s)	344
PspFI	CCCAGC	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	344
PspN4I	GGNNCC	3 cut(s)	61, 335, 688
PsuI	RGATCY	1 cut(s)	628
PsyI	GACNNNGTC	1 cut(s)	600
PteI	GCGCGC	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	316
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	4 cut(s)	68, 468, 483, 624
SatI	GCNGC	8 cut(s)	63, 134, 179, 332, 362, 365, 368, 654
Sau3AI	GATC	3 cut(s)	228, 628, 658
SchI	GAGTC	2 cut(s)	137, 610
ScrFI	CCNGG	1 cut(s)	346
SfaNI	GCATC	2 cut(s)	273, 690
SfoI	GGCGCC	2 cut(s)	61, 688
SmiMI	CAYNNNNRTG	1 cut(s)	316
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
Sse9I	AATT	5 cut(s)	73, 556, 562, 568, 574
SspDI	GGCGCC	2 cut(s)	59, 686
StyD4I	CCNGG	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	317
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	3 cut(s)	183, 447, 669
TasI	AATT	5 cut(s)	73, 556, 562, 568, 574
TauI	GCSGC	6 cut(s)	65, 136, 181, 334, 370, 656
TfiI	GAWTC	2 cut(s)	89, 703
Tru1I	TTAA	4 cut(s)	68, 468, 483, 624
Tru9I	TTAA	4 cut(s)	68, 468, 483, 624
TscAI	CASTG	2 cut(s)	144, 160
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	2 cut(s)	361, 364
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	3 cut(s)	395, 606, 655
TspGWI	ACGGA	2 cut(s)	99, 402
TspRI	CASTG	2 cut(s)	144, 160
Tth111I	GACNNNGTC	1 cut(s)	600
Vha464I	CTTAAG	1 cut(s)	67
VspI	ATTAAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.