Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0009861

Physical Location & Seq

Genomic Coordinates Reverse (-)

63950390 .. 63954829

Gene Structure 4440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG467800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2142 bp

ATGGGGTGCGCGCAATCGAGAATCGACAATGAGGAATCGGTGTCGAGATGCAAGGAGCGGAGGAACCTGATGAGAGAAGCGGTGGTGGCCAGAAACGCCTTCGCGGCCGGCCATTCCGGCTACGTCATGGCCTTGAAGAACACCGGCGCCGCCTTAAGCGATTACGGCCACGGAGAATCACAGCAGACACAAGAAGAGCTACTCCTCCATCACGACCAGCGGCCACTCGACCCCACCGCAACCGAGCCGCCGCCTCCTCCTCCTCCGCCGCTCGAACACCTCCCTCCGCCGCCGCCGCCTCTGCCGACTTTCACTACTCCCAGCCCGCCGATCAAGCGCGCCACCAGCCTGCCGCCGGAGGTCCGGAAAACGGGGATGCAGGGGGCTAGGTTGCCCATTGCTGAGGAGGACGAGGACCATGAGGAAGAAAAAGGGTTTCGCCGGAGATCGAGAAAGGAAATGGGCGCCGCGGCGGCGACGACGGCGACGGGGTCCTCATCGCCGCAGACGCCGGAGATGAAGGCGGTGCCGCCGCCGTTGCCGGAGTCCAAGGGTGCGGCTTGGGACTATTTCTTCATGGTGGATAACATGCCGGGGCACAGCTTGAGTGAGAATGAAGGTGAAGAGTTTGGTGAAGATGAGAATGTGAATGATTTGGGTGATGGGGATGGTGATGAGCCCAAGACCCCGGAGAAAGCGGAGGAGATTCAGTTGAAGCCGGAGGAGATTCCGGTGTCTCCAGTGACTCCGGCGACAATTGAGCATTCGAAGACAGCCCCACCGGATTTTCAGAGGATGGTGATGCCCGGTTTTACTTTGATGGAAATATTGAATCAGATTGATGATCATTTCTTAAAGGCCTCGGAGAGTGCTCAGGAGGTTTCCAAGATGCTTGAGGCCACTCGATTGCATTATCACTCGAATTTTGCTGATAATCGAGGACACATTGATCATTCTGCACGAGTCATGCGTGTTATTACTTGGAATAAATCCTTCAGAGGCTTACCGAATGGTGATGGAGCAAAGGAGGAAGATTCAGATGATTATGAAACTCATGCCACTGTTTTGGATAAGTTGTTAGCATGGGAGAAGAAACTTTATGATGAAGTGAAGCAAGGGGAGCTTATGAAGGTTGAGTATCAGAGAAAGGTTGCTCTACTAAACAAGCAGAAAAAACGCAATGCTAGTGCTGAAACCTTGGAAAAAACGAAAGCAGCAGTAAGTCACTTGCATACAAGATATATTGTTGACATGCAGTCCATGGACTCTACAGTTTCAGAAGTGAATCAGATACGGGATGAGCAGCTGTACCCTAAACTTGTTTCTCTAGCTGACGCGATGGGAAAAATGTGGGAAAATATGTGTGCGCATCATGACAGCCAGCTGAAGATTGTTATGGACCTGAAAGCCCTTGACATTGCCCATACTCCGATGGAAACGACCAGGCACCACCATGAACGCACTGAACAGCTATTTAACGTTGTCCAACATTGGCATTCCGAATTTGAAAAGCTTGTGATTAATCAGAAACAATACATCCAAGCATTGAATAGCTGGTTGAAGTTGAATCTGATTCCTATTGAAAGCAGCTTAAAAGAGAAAATCTCTTCCCCTCCAAGAGTTCAGCGTCCCCCAATTCAACCGCTTCTCCATGCATGGCATGATTTTCTTGAAAAGCTTCCTGATGAACTTGCAAAATCTGCAACATCATCCTTTGCGGCTGTGATAAAGACTATATTACTTCATCAGGAGGAAGAGATTAAGCTAAAGGAGCAATATGAGAATACAAGGAAGGACCACATGCGTAAAAATCAGGCATTTCAAGACTGGTACCAGAAGTATATGCAGCGTAAGGGGCCTGGTGAAGCAGATCAGGAGAAAAGTGAAGATGCGAACCACAAGGATCCTATTGCAGAGAGGCAATTTGCAGTTGAGAGCTTGAAGAAGAAAATGGAAGAGGAAGCTGAAGCTCACCAGAGACATTGTATCCAGGTCAGAGAGAAGTCACTCGGGAGTCTCAAAACTCGCTTGCCTGAGCTCTTCCGCGCAATGTCAGACTATGCTCACACATGTGCTGATGCTTACGGAAAACTTAGGTCCATCACAATGCCACAAGCTTCAAATGGTAACTCTCATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

713

Amino Acids

80.86

Weight (kDa)

5.82

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF630	PF04783	1 - 59	9.6e-23	Protein of unknown function (DUF630)
DUF632	PF04782	273 - 577	1.4e-103	Protein of unknown function (DUF632)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25590
fragaria_vesca	FvH4_2g36270
malus_domestica	MD08G1120200.v1.1 MD15G1099400.v1.1
prunus_persica	Prupe.1G454100_v2.0.a1
pyrus_communis	pycom15g09140
rosa_chinensis	RchiOBHm_Chr6g0305621
rosa_laevigata	RLG00000010872 RLG00000018217
rosa_multiflora	Rmu_co8402805.1_g000001 Rmu_co8491339.1_g000001 Rmu_sc0001809.1_g000015
rosa_roxburghii	Rroxscaffold_7G00162520
rosa_rugosa	Rorug06G0342200
rosa_samantha	Rh2AG452300 Rh4BG182200 Rh6AG454100 Rh6BG447400 Rh6CG467800 Rh6DG454400
rosa_wichuraiana	Rw6G039590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1368
Acc65I	GGTACC	1 cut(s)	1830
AccB1I	GGYRCC	5 cut(s)	146, 464, 526, 1446, 1830
AccBSI	CCGCTC	2 cut(s)	58, 271
AccII	CGCG	6 cut(s)	11, 104, 339, 470, 1337, 2046
AccIII	TCCGGA	1 cut(s)	363
AclI	AACGTT	1 cut(s)	1479
AclWI	GGATC	2 cut(s)	1898, 1911
AcoI	YGGCCR	5 cut(s)	87, 105, 109, 166, 221
AcsI	RAATTY	2 cut(s)	922, 1502
AcuI	CTGAAG	3 cut(s)	979, 1406, 1986
AcyI	GRCGYC	3 cut(s)	147, 465, 509
AfaI	GTAC	2 cut(s)	1310, 1832
AfiI	CCNNNNNNNGG	2 cut(s)	355, 370
AflII	CTTAAG	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	2069
AhdI	GACNNNNNGTC	1 cut(s)	1255
AjnI	CCWGG	3 cut(s)	1442, 1858, 1989
AleI	CACNNNNGTG	1 cut(s)	2070
Alw21I	GWGCWC	2 cut(s)	874, 2040
Alw26I	GTCTC	3 cut(s)	741, 1972, 2021
AlwI	GGATC	2 cut(s)	1898, 1911
Ama87I	CYCGRG	1 cut(s)	2009
Aor13HI	TCCGGA	1 cut(s)	363
AoxI	GGCC	9 cut(s)	87, 105, 109, 129, 166, 221, 858, 897, 1856
ApeKI	GCWGC	4 cut(s)	1214, 1303, 1587, 1846
ApoI	RAATTY	2 cut(s)	922, 1502
AseI	ATTAAT	1 cut(s)	1521
Asp700I	GAANNNNTTC	1 cut(s)	1677
Asp718I	GGTACC	1 cut(s)	1830
AspLEI	GCGC	8 cut(s)	11, 13, 149, 339, 341, 467, 1369, 2048
AspS9I	GGNCC	7 cut(s)	361, 415, 492, 1399, 1795, 1856, 2097
AsuC2I	CCSGG	3 cut(s)	594, 689, 807
AsuHPI	GGTGA	8 cut(s)	632, 644, 671, 683, 811, 1025, 1874, 1964
AsuII	TTCGAA	1 cut(s)	767
AvaI	CYCGRG	1 cut(s)	2009
AvaII	GGWCC	6 cut(s)	361, 415, 492, 1399, 1795, 2097
BaeGI	GKGCMC	1 cut(s)	600
BalI	TGGCCA	1 cut(s)	89
BamHI	GGATCC	1 cut(s)	1903
BanI	GGYRCC	5 cut(s)	146, 464, 526, 1446, 1830
BanII	GRGCYC	2 cut(s)	681, 2040
BauI	CACGAG	1 cut(s)	960
BbsI	GAAGAC	1 cut(s)	776
Bbv12I	GWGCWC	2 cut(s)	874, 2040
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	4 cut(s)	1226, 1315, 1599, 1858
BccI	CCATC	9 cut(s)	216, 656, 662, 790, 814, 1010, 1333, 1426, 2108
BceAI	ACGGC	3 cut(s)	181, 498, 520
BciT130I	CCWGG	3 cut(s)	1444, 1860, 1991
BciVI	GTATCC	1 cut(s)	1997
BclI	TGATCA	2 cut(s)	844, 949
BcnI	CCSGG	3 cut(s)	594, 689, 807
BcoDI	GTCTC	3 cut(s)	741, 1972, 2021
BfaI	CTAG	3 cut(s)	387, 1185, 1328
BfmI	CTRYAG	1 cut(s)	1269
BfoI	RGCGCY	2 cut(s)	150, 468
BfrI	CTTAAG	1 cut(s)	154
BfuI	GTATCC	1 cut(s)	1997
BglI	GCCNNNNNGGC	3 cut(s)	104, 117, 473
Bme1390I	CCNGG	6 cut(s)	594, 689, 807, 1444, 1860, 1991
Bme18I	GGWCC	6 cut(s)	361, 415, 492, 1399, 1795, 2097
BmeRI	GACNNNNNGTC	1 cut(s)	1255
BmeT110I	CYCGRG	1 cut(s)	2009
BmgT120I	GGNCC	7 cut(s)	361, 415, 492, 1399, 1795, 1856, 2097
BmiI	GGNNCC	9 cut(s)	65, 148, 466, 493, 528, 1448, 1832, 1857, 1905
BmrFI	CCNGG	6 cut(s)	594, 689, 807, 1444, 1860, 1991
BmsI	GCATC	7 cut(s)	38, 366, 792, 879, 1378, 1879, 2068
BpiI	GAAGAC	1 cut(s)	776
BplI	GAGNNNNNCTC	2 cut(s)	1589, 1621
BpmI	CTGGAG	1 cut(s)	723
Bpu10I	CCTNAGC	3 cut(s)	402, 873, 2034
Bpu14I	TTCGAA	1 cut(s)	767
BpuEI	CTTGAG	2 cut(s)	625, 914
BpuMI	CCSGG	3 cut(s)	594, 689, 807
BsaHI	GRCGYC	3 cut(s)	147, 465, 509
BsaJI	CCNNGG	8 cut(s)	169, 468, 549, 593, 687, 861, 1197, 1260
BsaWI	WCCGGW	3 cut(s)	363, 730, 781
BsaXI	ACNNNNNCTCC	4 cut(s)	695, 725, 1632, 1662
Bsc4I	CCNNNNNNNGG	2 cut(s)	355, 370
Bse118I	RCCGGY	2 cut(s)	107, 143
Bse1I	ACTGG	2 cut(s)	740, 1832
Bse3DI	GCAATG	4 cut(s)	396, 1186, 1416, 2055
BseAI	TCCGGA	1 cut(s)	363
BseBI	CCWGG	3 cut(s)	1444, 1860, 1991
BseDI	CCNNGG	8 cut(s)	169, 468, 549, 593, 687, 861, 1197, 1260
BseGI	GGATG	6 cut(s)	381, 673, 801, 1303, 1536, 1709
BseLI	CCNNNNNNNGG	2 cut(s)	355, 370
BseMI	GCAATG	4 cut(s)	396, 1186, 1416, 2055
BseMII	CTCAG	3 cut(s)	393, 887, 2025
BseNI	ACTGG	2 cut(s)	740, 1832
BsePI	GCGCGC	2 cut(s)	9, 337
BseRI	GAGGAG	7 cut(s)	194, 246, 249, 252, 419, 716, 737
BseSI	GKGCMC	1 cut(s)	600
BseX3I	CGGCCG	1 cut(s)	105
BseXI	GCAGC	4 cut(s)	1226, 1315, 1599, 1858
BseYI	CCCAGC	1 cut(s)	320
BsgI	GTGCAG	1 cut(s)	942
Bsh1236I	CGCG	6 cut(s)	11, 104, 339, 470, 1337, 2046
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	9 cut(s)	89, 107, 111, 131, 168, 223, 860, 899, 1858
BshNI	GGYRCC	5 cut(s)	146, 464, 526, 1446, 1830
BsiEI	CGRYCG	1 cut(s)	108
BsiHKAI	GWGCWC	2 cut(s)	874, 2040
BsiHKCI	CYCGRG	1 cut(s)	2009
BslFI	GGGAC	2 cut(s)	578, 1614
BslI	CCNNNNNNNGG	2 cut(s)	355, 370
BsmAI	GTCTC	3 cut(s)	741, 1972, 2021
BsmFI	GGGAC	2 cut(s)	578, 1614
BsmI	GAATGC	2 cut(s)	763, 1495
BsnI	GGCC	9 cut(s)	89, 107, 111, 131, 168, 223, 860, 899, 1858
BsoBI	CYCGRG	1 cut(s)	2009
Bsp119I	TTCGAA	1 cut(s)	767
Bsp1286I	GDGCHC	4 cut(s)	600, 681, 874, 2040
Bsp13I	TCCGGA	1 cut(s)	363
Bsp143I	GATC	6 cut(s)	330, 446, 844, 949, 1870, 1903
Bsp19I	CCATGG	1 cut(s)	1260
BspANI	GGCC	9 cut(s)	89, 107, 111, 131, 168, 223, 860, 899, 1858
BspCNI	CTCAG	3 cut(s)	394, 886, 2026
BspEI	TCCGGA	1 cut(s)	363
BspFNI	CGCG	6 cut(s)	11, 104, 339, 470, 1337, 2046
BspHI	TCATGA	1 cut(s)	1372
BspLI	GGNNCC	9 cut(s)	65, 148, 466, 493, 528, 1448, 1832, 1857, 1905
BspPI	GGATC	2 cut(s)	1898, 1911
BspQI	GCTCTTC	2 cut(s)	189, 2045
BspT104I	TTCGAA	1 cut(s)	767
BspT107I	GGYRCC	5 cut(s)	146, 464, 526, 1446, 1830
BspTI	CTTAAG	1 cut(s)	154
BsrBI	CCGCTC	2 cut(s)	58, 271
BsrDI	GCAATG	4 cut(s)	396, 1186, 1416, 2055
BsrFI	RCCGGY	2 cut(s)	107, 143
BsrI	ACTGG	2 cut(s)	740, 1832
BssAI	RCCGGY	2 cut(s)	107, 143
BssECI	CCNNGG	8 cut(s)	169, 468, 549, 593, 687, 861, 1197, 1260
BssHII	GCGCGC	2 cut(s)	9, 337
BssMI	GATC	6 cut(s)	330, 446, 844, 949, 1870, 1903
BssNI	GRCGYC	3 cut(s)	147, 465, 509
BssSI	CACGAG	1 cut(s)	960
BssT1I	CCWWGG	3 cut(s)	549, 1197, 1260
Bst2BI	CACGAG	1 cut(s)	960
Bst2UI	CCWGG	3 cut(s)	1444, 1860, 1991
Bst4CI	ACNGT	2 cut(s)	1063, 1273
Bst6I	CTCTTC	6 cut(s)	189, 618, 1612, 1749, 1950, 2045
BstACI	GRCGYC	3 cut(s)	147, 465, 509
BstAFI	CTTAAG	1 cut(s)	154
BstAPI	GCANNNNNTGC	1 cut(s)	1700
BstBI	TTCGAA	1 cut(s)	767
BstC8I	GCNNGC	7 cut(s)	11, 109, 326, 339, 350, 1382, 2030
BstDEI	CTNAG	4 cut(s)	402, 873, 2034, 2093
BstDSI	CCRYGG	3 cut(s)	169, 468, 1260
BstF5I	GGATG	6 cut(s)	381, 673, 801, 1303, 1536, 1709
BstFNI	CGCG	6 cut(s)	11, 104, 339, 470, 1337, 2046
BstH2I	RGCGCY	2 cut(s)	150, 468
BstHHI	GCGC	8 cut(s)	11, 13, 149, 339, 341, 467, 1369, 2048
BstKTI	GATC	6 cut(s)	333, 449, 847, 952, 1873, 1906
BstMAI	GTCTC	3 cut(s)	741, 1972, 2021
BstMBI	GATC	6 cut(s)	330, 446, 844, 949, 1870, 1903
BstMCI	CGRYCG	1 cut(s)	108
BstNI	CCWGG	3 cut(s)	1444, 1860, 1991
BstNSI	RCATGY	4 cut(s)	592, 1255, 1804, 2073
BstSCI	CCNGG	6 cut(s)	592, 687, 805, 1442, 1858, 1989
BstSFI	CTRYAG	1 cut(s)	1269
BstSLI	GKGCMC	1 cut(s)	600
BstUI	CGCG	6 cut(s)	11, 104, 339, 470, 1337, 2046
BstV1I	GCAGC	4 cut(s)	1226, 1315, 1599, 1858
BstV2I	GAAGAC	1 cut(s)	776
BstX2I	RGATCY	1 cut(s)	1903
BstXI	CCANNNNNNTGG	1 cut(s)	1066
BstYI	RGATCY	1 cut(s)	1903
BstZI	CGGCCG	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	1997
BsuRI	GGCC	9 cut(s)	89, 107, 111, 131, 168, 223, 860, 899, 1858
BtgI	CCRYGG	3 cut(s)	169, 468, 1260
BtgZI	GCGATG	2 cut(s)	483, 1352
BtsCI	GGATG	6 cut(s)	381, 673, 801, 1303, 1536, 1709
BtsIMutI	CAGTG	3 cut(s)	747, 1059, 1461
Cac8I	GCNNGC	7 cut(s)	11, 109, 326, 339, 350, 1382, 2030
CciI	TCATGA	1 cut(s)	1372
CfoI	GCGC	8 cut(s)	11, 13, 149, 339, 341, 467, 1369, 2048
Cfr10I	RCCGGY	2 cut(s)	107, 143
Cfr13I	GGNCC	7 cut(s)	361, 415, 492, 1399, 1795, 1856, 2097
Cfr42I	CCGCGG	1 cut(s)	471
CseI	GACGC	3 cut(s)	517, 1343, 1616
Csp6I	GTAC	2 cut(s)	1309, 1831
CviQI	GTAC	2 cut(s)	1309, 1831
DdeI	CTNAG	4 cut(s)	402, 873, 2034, 2093
DinI	GGCGCC	2 cut(s)	148, 466
DpnI	GATC	6 cut(s)	332, 448, 846, 951, 1872, 1905
DpnII	GATC	6 cut(s)	330, 446, 844, 949, 1870, 1903
DriI	GACNNNNNGTC	1 cut(s)	1255
EaeI	YGGCCR	5 cut(s)	87, 105, 109, 166, 221
EagI	CGGCCG	1 cut(s)	105
Eam1104I	CTCTTC	6 cut(s)	189, 618, 1612, 1749, 1950, 2045
Eam1105I	GACNNNNNGTC	1 cut(s)	1255
EarI	CTCTTC	6 cut(s)	189, 618, 1612, 1749, 1950, 2045
EciI	GGCGGA	2 cut(s)	255, 276
Ecl136II	GAGCTC	1 cut(s)	2038
EclXI	CGGCCG	1 cut(s)	105
Eco130I	CCWWGG	3 cut(s)	549, 1197, 1260
Eco147I	AGGCCT	1 cut(s)	860
Eco24I	GRGCYC	2 cut(s)	681, 2040
Eco47I	GGWCC	6 cut(s)	361, 415, 492, 1399, 1795, 2097
Eco52I	CGGCCG	1 cut(s)	105
Eco53kI	GAGCTC	1 cut(s)	2038
Eco57I	CTGAAG	3 cut(s)	979, 1406, 1986
Eco88I	CYCGRG	1 cut(s)	2009
EcoICRI	GAGCTC	1 cut(s)	2038
EcoO109I	RGGNCCY	2 cut(s)	492, 1856
EcoRII	CCWGG	3 cut(s)	1442, 1858, 1989
EcoT14I	CCWWGG	3 cut(s)	549, 1197, 1260
EcoT22I	ATGCAT	1 cut(s)	1657
EcoT38I	GRGCYC	2 cut(s)	681, 2040
EgeI	GGCGCC	2 cut(s)	148, 466
EheI	GGCGCC	2 cut(s)	148, 466
ErhI	CCWWGG	3 cut(s)	549, 1197, 1260
FalI	AAGNNNNNCTT	2 cut(s)	1107, 1139
FaqI	GGGAC	2 cut(s)	578, 1614
FauI	CCCGC	1 cut(s)	333
FbaI	TGATCA	2 cut(s)	844, 949
FokI	GGATG	6 cut(s)	388, 680, 808, 1310, 1523, 1696
FriOI	GRGCYC	2 cut(s)	681, 2040
FseI	GGCCGGCC	1 cut(s)	111
FspAI	RTGCGCAY	1 cut(s)	1368
FspBI	CTAG	3 cut(s)	387, 1185, 1328
FspI	TGCGCA	1 cut(s)	1368
GlaI	GCGC	8 cut(s)	10, 12, 148, 338, 340, 466, 1368, 2047
GsaI	CCCAGC	1 cut(s)	324
GsuI	CTGGAG	1 cut(s)	723
HaeII	RGCGCY	2 cut(s)	150, 468
HaeIII	GGCC	9 cut(s)	89, 107, 111, 131, 168, 223, 860, 899, 1858
HgaI	GACGC	3 cut(s)	517, 1343, 1616
HhaI	GCGC	8 cut(s)	11, 13, 149, 339, 341, 467, 1369, 2048
Hin1I	GRCGYC	3 cut(s)	147, 465, 509
Hin6I	GCGC	8 cut(s)	9, 11, 147, 337, 339, 465, 1367, 2046
HinP1I	GCGC	8 cut(s)	9, 11, 147, 337, 339, 465, 1367, 2046
HincII	GTYRAC	1 cut(s)	1249
HindII	GTYRAC	1 cut(s)	1249
HindIII	AAGCTT	3 cut(s)	1511, 1676, 2115
HphI	GGTGA	8 cut(s)	632, 644, 671, 683, 811, 1025, 1874, 1964
Hpy166II	GTNNAC	1 cut(s)	1249
Hpy8I	GTNNAC	1 cut(s)	1249
Hpy99I	CGWCG	3 cut(s)	481, 484, 490
HpyAV	CCTTC	6 cut(s)	109, 514, 611, 1003, 1123, 1786
HpyCH4III	ACNGT	2 cut(s)	1063, 1273
HpyCH4IV	ACGT	2 cut(s)	123, 1479
HpyF3I	CTNAG	4 cut(s)	402, 873, 2034, 2093
HpySE526I	ACGT	2 cut(s)	123, 1479
Hsp92I	GRCGYC	3 cut(s)	147, 465, 509
HspAI	GCGC	8 cut(s)	9, 11, 147, 337, 339, 465, 1367, 2046
KasI	GGCGCC	2 cut(s)	146, 464
Kpn2I	TCCGGA	1 cut(s)	363
KpnI	GGTACC	1 cut(s)	1834
KroI	GCCGGC	1 cut(s)	107
KroNI	GCCGGC	1 cut(s)	109
Ksp22I	TGATCA	2 cut(s)	844, 949
KspI	CCGCGG	1 cut(s)	471
Kzo9I	GATC	6 cut(s)	330, 446, 844, 949, 1870, 1903
LguI	GCTCTTC	2 cut(s)	189, 2045
LmnI	GCTCC	4 cut(s)	55, 1019, 1120, 1771
Lsp1109I	GCAGC	4 cut(s)	1226, 1315, 1599, 1858
LweI	GCATC	7 cut(s)	38, 366, 792, 879, 1378, 1879, 2068
MaeI	CTAG	3 cut(s)	387, 1185, 1328
MaeII	ACGT	2 cut(s)	123, 1479
MaeIII	GTNAC	4 cut(s)	742, 1223, 2004, 2126
MalI	GATC	6 cut(s)	332, 448, 846, 951, 1872, 1905
MbiI	CCGCTC	2 cut(s)	58, 271
MboI	GATC	6 cut(s)	330, 446, 844, 949, 1870, 1903
MfeI	CAATTG	1 cut(s)	756
MflI	RGATCY	1 cut(s)	1903
MhlI	GDGCHC	4 cut(s)	600, 681, 874, 2040
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	5 cut(s)	756, 922, 1502, 1635, 1922
MluNI	TGGCCA	1 cut(s)	89
Mly113I	GGCGCC	2 cut(s)	147, 465
MlyI	GAGTC	5 cut(s)	554, 739, 972, 1259, 2023
MmeI	TCCRAC	1 cut(s)	1510
Mox20I	TGGCCA	1 cut(s)	89
Mph1103I	ATGCAT	1 cut(s)	1657
MroI	TCCGGA	1 cut(s)	363
MroNI	GCCGGC	1 cut(s)	107
MroXI	GAANNNNTTC	1 cut(s)	1677
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	6 cut(s)	155, 854, 1476, 1521, 1592, 1761
MslI	CAYNNNNRTG	3 cut(s)	1452, 2070, 2105
Msp20I	TGGCCA	1 cut(s)	89
MspA1I	CMGCKG	4 cut(s)	220, 470, 1306, 1384
MspCI	CTTAAG	1 cut(s)	154
MspR9I	CCNGG	6 cut(s)	594, 689, 807, 1444, 1860, 1991
MunI	CAATTG	1 cut(s)	756
Mva1269I	GAATGC	2 cut(s)	763, 1495
MvaI	CCWGG	3 cut(s)	1444, 1860, 1991
MvnI	CGCG	6 cut(s)	11, 104, 339, 470, 1337, 2046
NaeI	GCCGGC	1 cut(s)	109
NarI	GGCGCC	2 cut(s)	147, 465
NciI	CCSGG	3 cut(s)	594, 689, 807
NcoI	CCATGG	1 cut(s)	1260
NdeII	GATC	6 cut(s)	330, 446, 844, 949, 1870, 1903
NgoMIV	GCCGGC	1 cut(s)	107
NlaIV	GGNNCC	9 cut(s)	65, 148, 466, 493, 528, 1448, 1832, 1857, 1905
NmuCI	GTSAC	3 cut(s)	742, 1223, 2004
NsbI	TGCGCA	1 cut(s)	1368
NsiI	ATGCAT	1 cut(s)	1657
NspI	RCATGY	4 cut(s)	592, 1255, 1804, 2073
NspV	TTCGAA	1 cut(s)	767
OliI	CACNNNNGTG	1 cut(s)	2070
PagI	TCATGA	1 cut(s)	1372
PauI	GCGCGC	2 cut(s)	9, 337
PceI	AGGCCT	1 cut(s)	860
PciI	ACATGT	1 cut(s)	2069
PciSI	GCTCTTC	2 cut(s)	189, 2045
PcsI	WCGNNNNNNNCGW	1 cut(s)	967
PctI	GAATGC	2 cut(s)	763, 1495
PdiI	GCCGGC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	1677
PflFI	GACNNNGTC	1 cut(s)	490
PleI	GAGTC	5 cut(s)	553, 739, 971, 1259, 2022
PluTI	GGCGCC	2 cut(s)	150, 468
PpsI	GAGTC	5 cut(s)	553, 739, 971, 1259, 2022
PpuMI	RGGWCCY	1 cut(s)	492
PscI	ACATGT	1 cut(s)	2069
PshBI	ATTAAT	1 cut(s)	1521
Psp124BI	GAGCTC	1 cut(s)	2040
Psp1406I	AACGTT	1 cut(s)	1479
Psp5II	RGGWCCY	1 cut(s)	492
Psp6I	CCWGG	3 cut(s)	1442, 1858, 1989
PspFI	CCCAGC	1 cut(s)	320
PspGI	CCWGG	3 cut(s)	1442, 1858, 1989
PspN4I	GGNNCC	9 cut(s)	65, 148, 466, 493, 528, 1448, 1832, 1857, 1905
PspPI	GGNCC	7 cut(s)	361, 415, 492, 1399, 1795, 1856, 2097
PspPPI	RGGWCCY	1 cut(s)	492
PsuI	RGATCY	1 cut(s)	1903
PsyI	GACNNNGTC	1 cut(s)	490
PteI	GCGCGC	2 cut(s)	9, 337
PvuII	CAGCTG	2 cut(s)	1306, 1384
RigI	GGCCGGCC	1 cut(s)	111
RsaI	GTAC	2 cut(s)	1310, 1832
RsaNI	GTAC	2 cut(s)	1309, 1831
RseI	CAYNNNNRTG	3 cut(s)	1452, 2070, 2105
SacI	GAGCTC	1 cut(s)	2040
SacII	CCGCGG	1 cut(s)	471
SapI	GCTCTTC	2 cut(s)	189, 2045
SaqAI	TTAA	6 cut(s)	155, 854, 1476, 1521, 1592, 1761
Sau3AI	GATC	6 cut(s)	330, 446, 844, 949, 1870, 1903
Sau96I	GGNCC	7 cut(s)	361, 415, 492, 1399, 1795, 1856, 2097
SchI	GAGTC	5 cut(s)	554, 739, 972, 1259, 2023
ScrFI	CCNGG	6 cut(s)	594, 689, 807, 1444, 1860, 1991
SduI	GDGCHC	4 cut(s)	600, 681, 874, 2040
SfaNI	GCATC	7 cut(s)	38, 366, 792, 879, 1378, 1879, 2068
SfcI	CTRYAG	1 cut(s)	1269
SfoI	GGCGCC	2 cut(s)	148, 466
Sfr303I	CCGCGG	1 cut(s)	471
SfuI	TTCGAA	1 cut(s)	767
SgrAI	CRCCGGYG	1 cut(s)	143
SgrBI	CCGCGG	1 cut(s)	471
SinI	GGWCC	6 cut(s)	361, 415, 492, 1399, 1795, 2097
SmiMI	CAYNNNNRTG	3 cut(s)	1452, 2070, 2105
SmlI	CTYRAG	3 cut(s)	154, 604, 893
SmoI	CTYRAG	3 cut(s)	154, 604, 893
Sse9I	AATT	5 cut(s)	756, 922, 1502, 1635, 1922
SseBI	AGGCCT	1 cut(s)	860
SspDI	GGCGCC	2 cut(s)	146, 464
SspI	AATATT	1 cut(s)	828
SspMI	CTAG	3 cut(s)	387, 1185, 1328
SstI	GAGCTC	1 cut(s)	2040
StuI	AGGCCT	1 cut(s)	860
StyD4I	CCNGG	6 cut(s)	592, 687, 805, 1442, 1858, 1989
StyI	CCWWGG	3 cut(s)	549, 1197, 1260
TaaI	ACNGT	2 cut(s)	1063, 1273
TaiI	ACGT	2 cut(s)	126, 1482
TasI	AATT	5 cut(s)	756, 922, 1502, 1635, 1922
Tru1I	TTAA	6 cut(s)	155, 854, 1476, 1521, 1592, 1761
Tru9I	TTAA	6 cut(s)	155, 854, 1476, 1521, 1592, 1761
TscAI	CASTG	3 cut(s)	747, 1066, 1468
TseFI	GTSAC	3 cut(s)	742, 1223, 2004
TseI	GCWGC	4 cut(s)	1214, 1303, 1587, 1846
Tsp45I	GTSAC	3 cut(s)	742, 1223, 2004
TspDTI	ATGAA	9 cut(s)	533, 565, 630, 1062, 1119, 1142, 1470, 1701, 1733
TspGWI	ACGGA	2 cut(s)	186, 2100
TspRI	CASTG	3 cut(s)	747, 1066, 1468
Tth111I	GACNNNGTC	1 cut(s)	490
Vha464I	CTTAAG	1 cut(s)	154
VpaK11BI	GGWCC	6 cut(s)	361, 415, 492, 1399, 1795, 2097
VspI	ATTAAT	1 cut(s)	1521
XapI	RAATTY	2 cut(s)	922, 1502
XceI	RCATGY	4 cut(s)	592, 1255, 1804, 2073
XmnI	GAANNNNTTC	1 cut(s)	1677
XspI	CTAG	3 cut(s)	387, 1185, 1328
Zsp2I	ATGCAT	1 cut(s)	1657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.