Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009861

Physical Location & Seq

Genomic Coordinates Reverse (-)

49320177 .. 49322243

Gene Structure 2067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0342200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGGAGCCCTTGATCTTGATCTTATGGCTTCTGTGTTTGGAATTTTGGGTACCATCGTCGCGTTCCTCGTTTACCTAGCCCCACTACCAACATTTTATTGGATTTTCAAGAAAAAATCAACACAAGGATTCCCATCTATACCCTATTCAGTGTCATTGTTTAGCGCCATGTTGACACTCTACTATGCCTTCGTCAAGACAAACTGTTTGCTGCTCATCACGATAAATTCCATTGGCTGCTTCATCGAAACCGTGTACCTTGTTGTGTTCATGATATATGCAACACCAAAATCCAGGACTTTTGCAACAAAGCTGCTTATTCTGTTTAATATCTTGGGTTATGGTTTGATGTTATTGTGTACAAGCCTAGTCCCAAATGTTCTGCTGAGGTTGAAAGTTGTTGGGTGGATAGTAATCGTGTTCAATGTCTGTGTGTTTGCTGCTCCTCTTACAATTATGAGGCAGGTTATTAAAACAAAGAGTGTGGAGTACATGTCATTCCCTTTGTCATTGAGCCTAACTCTGTGCGCTGTCATGTGGTTCTTCTATGGCCTTTTAATAAGAGATTTATTCATAGCGGCACCAAACGTGTTAGGGTTTGCGTTCGGAATTGTTCAGATGATTATGATCCTCGTCTACAGGAAGAAAACCAAGATAGCTGTCTTGACGGAATTCCGTCTAGGTGATCTGATACCAAGCACAAATATGGTTGCTGCTGCACTAAATGATGACATGACAGTAGCAATTGTCATTAATTCTCGACCGGTAGCTGGGGACGCAAAGAAGAGTTCTGAAACTGATGATGATCAGAATCCATTGGAGGGCCGGCCCAAAGTCAAGGCGACCTTGGCCGCTGCCTACGGCGTCATCTTGAGAAGGGGCTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

296

Amino Acids

32.74

Weight (kDa)

9.46

Isoelectric Point (pI)

30.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	12 - 97	7.5e-20	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	133 - 217	2.4e-27	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25590
fragaria_vesca	FvH4_2g36270
malus_domestica	MD08G1120200.v1.1 MD15G1099400.v1.1
prunus_persica	Prupe.1G454100_v2.0.a1
pyrus_communis	pycom15g09140
rosa_chinensis	RchiOBHm_Chr6g0305621
rosa_laevigata	RLG00000010872 RLG00000018217
rosa_multiflora	Rmu_co8402805.1_g000001 Rmu_co8491339.1_g000001 Rmu_sc0001809.1_g000015
rosa_roxburghii	Rroxscaffold_7G00162520
rosa_rugosa	Rorug06G0342200
rosa_samantha	Rh2AG452300 Rh4BG182200 Rh6AG454100 Rh6BG447400 Rh6CG467800 Rh6DG454400
rosa_wichuraiana	Rw6G039590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	454
Acc65I	GGTACC	1 cut(s)	50
AccB1I	GGYRCC	2 cut(s)	50, 580
AccI	GTMKAC	1 cut(s)	636
AccII	CGCG	1 cut(s)	62
AciI	CCGC	2 cut(s)	578, 852
AclWI	GGATC	1 cut(s)	622
AcoI	YGGCCR	1 cut(s)	849
AcsI	RAATTY	3 cut(s)	42, 226, 671
AcyI	GRCGYC	1 cut(s)	864
AfaI	GTAC	4 cut(s)	52, 257, 361, 491
AfiI	CCNNNNNNNGG	2 cut(s)	770, 821
AflIII	ACRYGT	2 cut(s)	492, 588
AgeI	ACCGGT	1 cut(s)	763
AgsI	TTSAA	3 cut(s)	109, 394, 424
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	3 cut(s)	313, 659, 770
AluI	AGCT	3 cut(s)	313, 659, 770
AlwI	GGATC	1 cut(s)	622
AoxI	GGCC	4 cut(s)	550, 823, 827, 849
ApeKI	GCWGC	7 cut(s)	211, 237, 313, 440, 713, 716, 854
ApoI	RAATTY	3 cut(s)	42, 226, 671
ArsI	GACNNNNNNTTYG	2 cut(s)	190, 222
AseI	ATTAAT	1 cut(s)	753
AsiGI	ACCGGT	1 cut(s)	763
Asp718I	GGTACC	1 cut(s)	50
AspLEI	GCGC	2 cut(s)	167, 530
AspS9I	GGNCC	2 cut(s)	823, 828
AsuHPI	GGTGA	1 cut(s)	695
BaeI	ACNNNNGTAYC	2 cut(s)	42, 75
BanI	GGYRCC	2 cut(s)	50, 580
BanII	GRGCYC	2 cut(s)	10, 884
BbvCI	CCTCAGC	1 cut(s)	386
BbvI	GCAGC	7 cut(s)	198, 224, 300, 427, 700, 703, 841
BccI	CCATC	2 cut(s)	62, 142
BceAI	ACGGC	1 cut(s)	877
BciT130I	CCWGG	1 cut(s)	295
BclI	TGATCA	1 cut(s)	805
BfaI	CTAG	3 cut(s)	77, 368, 680
BfmI	CTRYAG	1 cut(s)	637
BfoI	RGCGCY	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	454
BisI	GCNGC	9 cut(s)	212, 238, 314, 441, 579, 714, 717, 852, 855
BlsI	GCNGC	9 cut(s)	213, 239, 315, 442, 580, 715, 718, 853, 856
Bme1390I	CCNGG	1 cut(s)	295
BmgT120I	GGNCC	2 cut(s)	823, 828
BmiI	GGNNCC	3 cut(s)	7, 52, 582
BmrFI	CCNGG	1 cut(s)	295
BplI	GAGNNNNNCTC	2 cut(s)	505, 537
Bpu10I	CCTNAGC	1 cut(s)	386
BsaBI	GATNNNNATC	6 cut(s)	18, 133, 413, 626, 804, 810
BsaHI	GRCGYC	1 cut(s)	864
BsaJI	CCNNGG	1 cut(s)	846
BsaWI	WCCGGW	1 cut(s)	763
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	2 cut(s)	770, 821
Bse118I	RCCGGY	2 cut(s)	763, 825
Bse8I	GATNNNNATC	6 cut(s)	18, 133, 413, 626, 804, 810
BseBI	CCWGG	1 cut(s)	295
BseDI	CCNNGG	1 cut(s)	846
BseJI	GATNNNNATC	6 cut(s)	18, 133, 413, 626, 804, 810
BseLI	CCNNNNNNNGG	2 cut(s)	770, 821
BseMII	CTCAG	1 cut(s)	377
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	7 cut(s)	198, 224, 300, 427, 700, 703, 841
BseYI	CCCAGC	1 cut(s)	770
BsgI	GTGCAG	1 cut(s)	702
Bsh1236I	CGCG	1 cut(s)	62
Bsh1285I	CGRYCG	1 cut(s)	764
BshFI	GGCC	4 cut(s)	552, 825, 829, 851
BshNI	GGYRCC	2 cut(s)	50, 580
BshTI	ACCGGT	1 cut(s)	763
BsiEI	CGRYCG	1 cut(s)	764
BsiSI	CCGG	2 cut(s)	764, 826
BslFI	GGGAC	2 cut(s)	356, 788
BslI	CCNNNNNNNGG	2 cut(s)	770, 821
BsmFI	GGGAC	2 cut(s)	356, 788
BsnI	GGCC	4 cut(s)	552, 825, 829, 851
Bsp1286I	GDGCHC	2 cut(s)	10, 884
Bsp1407I	TGTACA	1 cut(s)	359
Bsp143I	GATC	5 cut(s)	13, 19, 627, 685, 805
BspACI	CCGC	2 cut(s)	578, 852
BspANI	GGCC	4 cut(s)	552, 825, 829, 851
BspCNI	CTCAG	1 cut(s)	378
BspFNI	CGCG	1 cut(s)	62
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	3 cut(s)	7, 52, 582
BspMI	ACCTGC	1 cut(s)	454
BspPI	GGATC	1 cut(s)	622
BspT107I	GGYRCC	2 cut(s)	50, 580
BsrFI	RCCGGY	2 cut(s)	763, 825
BsrGI	TGTACA	1 cut(s)	359
BssAI	RCCGGY	2 cut(s)	763, 825
BssECI	CCNNGG	1 cut(s)	846
BssMI	GATC	5 cut(s)	13, 19, 627, 685, 805
BssNI	GRCGYC	1 cut(s)	864
BssT1I	CCWWGG	1 cut(s)	846
Bst2UI	CCWGG	1 cut(s)	295
Bst4CI	ACNGT	3 cut(s)	206, 253, 739
Bst6I	CTCTTC	1 cut(s)	779
BstACI	GRCGYC	1 cut(s)	864
BstAUI	TGTACA	1 cut(s)	359
BstC8I	GCNNGC	1 cut(s)	827
BstDEI	CTNAG	1 cut(s)	386
BstFNI	CGCG	1 cut(s)	62
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	2 cut(s)	167, 530
BstKTI	GATC	5 cut(s)	16, 22, 630, 688, 808
BstMBI	GATC	5 cut(s)	13, 19, 627, 685, 805
BstMCI	CGRYCG	1 cut(s)	764
BstMWI	GCNNNNNNNGC	2 cut(s)	776, 848
BstNI	CCWGG	1 cut(s)	295
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	1 cut(s)	293
BstSFI	CTRYAG	1 cut(s)	637
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	7 cut(s)	198, 224, 300, 427, 700, 703, 841
BsuRI	GGCC	4 cut(s)	552, 825, 829, 851
BtsIMutI	CAGTG	1 cut(s)	156
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	827
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	2 cut(s)	167, 530
Cfr10I	RCCGGY	2 cut(s)	763, 825
Cfr13I	GGNCC	2 cut(s)	823, 828
CseI	GACGC	2 cut(s)	785, 853
Csp6I	GTAC	4 cut(s)	51, 256, 360, 490
CspAI	ACCGGT	1 cut(s)	763
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviAII	CATG	5 cut(s)	169, 271, 493, 535, 733
CviQI	GTAC	4 cut(s)	51, 256, 360, 490
DdeI	CTNAG	1 cut(s)	386
DpnI	GATC	5 cut(s)	15, 21, 629, 687, 807
DpnII	GATC	5 cut(s)	13, 19, 627, 685, 805
EaeI	YGGCCR	1 cut(s)	849
Eam1104I	CTCTTC	1 cut(s)	779
EarI	CTCTTC	1 cut(s)	779
Eco130I	CCWWGG	1 cut(s)	846
Eco24I	GRGCYC	2 cut(s)	10, 884
EcoRI	GAATTC	1 cut(s)	671
EcoRII	CCWGG	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	846
EcoT38I	GRGCYC	2 cut(s)	10, 884
ErhI	CCWWGG	1 cut(s)	846
FaeI	CATG	5 cut(s)	172, 274, 496, 538, 736
FalI	AAGNNNNNCTT	2 cut(s)	830, 862
FaqI	GGGAC	2 cut(s)	356, 788
FatI	CATG	5 cut(s)	168, 270, 492, 534, 732
FbaI	TGATCA	1 cut(s)	805
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	9 cut(s)	212, 238, 314, 441, 579, 714, 717, 852, 855
FriOI	GRGCYC	2 cut(s)	10, 884
FseI	GGCCGGCC	1 cut(s)	829
Fsp4HI	GCNGC	9 cut(s)	212, 238, 314, 441, 579, 714, 717, 852, 855
FspBI	CTAG	3 cut(s)	77, 368, 680
GlaI	GCGC	2 cut(s)	166, 529
GluI	GCNGC	9 cut(s)	212, 238, 314, 441, 579, 714, 717, 852, 855
GsaI	CCCAGC	1 cut(s)	774
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	4 cut(s)	552, 825, 829, 851
HapII	CCGG	2 cut(s)	764, 826
HgaI	GACGC	2 cut(s)	785, 853
HhaI	GCGC	2 cut(s)	167, 530
Hin1I	GRCGYC	1 cut(s)	864
Hin1II	CATG	5 cut(s)	172, 274, 496, 538, 736
Hin6I	GCGC	2 cut(s)	165, 528
HinP1I	GCGC	2 cut(s)	165, 528
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	2 cut(s)	129, 811
HpaII	CCGG	2 cut(s)	764, 826
HphI	GGTGA	1 cut(s)	695
Hpy166II	GTNNAC	5 cut(s)	73, 174, 256, 360, 637
Hpy188I	TCNGA	5 cut(s)	608, 618, 690, 793, 810
Hpy188III	TCNNGA	8 cut(s)	17, 109, 196, 220, 271, 664, 759, 871
Hpy8I	GTNNAC	5 cut(s)	73, 174, 256, 360, 637
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	199, 870
HpyCH4III	ACNGT	3 cut(s)	206, 253, 739
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	3 cut(s)	281, 305, 719
HpyF10VI	GCNNNNNNNGC	2 cut(s)	776, 848
HpyF3I	CTNAG	1 cut(s)	386
HpySE526I	ACGT	1 cut(s)	588
Hsp92I	GRCGYC	1 cut(s)	864
Hsp92II	CATG	5 cut(s)	172, 274, 496, 538, 736
HspAI	GCGC	2 cut(s)	165, 528
KpnI	GGTACC	1 cut(s)	54
KroI	GCCGGC	1 cut(s)	825
KroNI	GCCGGC	1 cut(s)	827
Ksp22I	TGATCA	1 cut(s)	805
Kzo9I	GATC	5 cut(s)	13, 19, 627, 685, 805
LmnI	GCTCC	2 cut(s)	5, 448
LpnPI	CCDG	7 cut(s)	280, 307, 449, 625, 756, 777, 839
Lsp1109I	GCAGC	7 cut(s)	198, 224, 300, 427, 700, 703, 841
MaeI	CTAG	3 cut(s)	77, 368, 680
MaeII	ACGT	1 cut(s)	588
MalI	GATC	5 cut(s)	15, 21, 629, 687, 807
MboI	GATC	5 cut(s)	13, 19, 627, 685, 805
MboII	GAAGA	3 cut(s)	535, 655, 796
MfeI	CAATTG	1 cut(s)	744
MhlI	GDGCHC	2 cut(s)	10, 884
MluCI	AATT	8 cut(s)	42, 226, 453, 609, 671, 744, 754, 885
MnlI	CCTC	6 cut(s)	77, 381, 453, 456, 641, 814
MroNI	GCCGGC	1 cut(s)	825
MseI	TTAA	4 cut(s)	327, 471, 557, 753
MslI	CAYNNNNRTG	1 cut(s)	704
MspA1I	CMGCKG	1 cut(s)	854
MspI	CCGG	2 cut(s)	764, 826
MspR9I	CCNGG	1 cut(s)	295
MunI	CAATTG	1 cut(s)	744
MvaI	CCWGG	1 cut(s)	295
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	776, 848
NaeI	GCCGGC	1 cut(s)	827
NdeII	GATC	5 cut(s)	13, 19, 627, 685, 805
NgoMIV	GCCGGC	1 cut(s)	825
NlaIII	CATG	5 cut(s)	172, 274, 496, 538, 736
NlaIV	GGNNCC	3 cut(s)	7, 52, 582
NspI	RCATGY	1 cut(s)	496
PagI	TCATGA	1 cut(s)	270
PciI	ACATGT	1 cut(s)	492
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PdiI	GCCGGC	1 cut(s)	827
PfeI	GAWTC	2 cut(s)	129, 811
PfoI	TCCNGGA	1 cut(s)	293
PinAI	ACCGGT	1 cut(s)	763
PkrI	GCNGC	9 cut(s)	213, 239, 315, 442, 580, 715, 718, 853, 856
PscI	ACATGT	1 cut(s)	492
PshBI	ATTAAT	1 cut(s)	753
Psp6I	CCWGG	1 cut(s)	293
PspFI	CCCAGC	1 cut(s)	770
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	3 cut(s)	7, 52, 582
PspPI	GGNCC	2 cut(s)	823, 828
RigI	GGCCGGCC	1 cut(s)	829
RsaI	GTAC	4 cut(s)	52, 257, 361, 491
RsaNI	GTAC	4 cut(s)	51, 256, 360, 490
RseI	CAYNNNNRTG	1 cut(s)	704
SaqAI	TTAA	4 cut(s)	327, 471, 557, 753
SatI	GCNGC	9 cut(s)	212, 238, 314, 441, 579, 714, 717, 852, 855
Sau3AI	GATC	5 cut(s)	13, 19, 627, 685, 805
Sau96I	GGNCC	2 cut(s)	823, 828
ScrFI	CCNGG	1 cut(s)	295
SduI	GDGCHC	2 cut(s)	10, 884
SfcI	CTRYAG	1 cut(s)	637
SmiMI	CAYNNNNRTG	1 cut(s)	704
SmlI	CTYRAG	1 cut(s)	871
SmoI	CTYRAG	1 cut(s)	871
Sse9I	AATT	8 cut(s)	42, 226, 453, 609, 671, 744, 754, 885
SsiI	CCGC	2 cut(s)	578, 852
SspMI	CTAG	3 cut(s)	77, 368, 680
StyD4I	CCNGG	1 cut(s)	293
StyI	CCWWGG	1 cut(s)	846
TaaI	ACNGT	3 cut(s)	206, 253, 739
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	2 cut(s)	246, 760
TasI	AATT	8 cut(s)	42, 226, 453, 609, 671, 744, 754, 885
TatI	WGTACW	2 cut(s)	359, 489
TauI	GCSGC	2 cut(s)	581, 854
TfiI	GAWTC	2 cut(s)	129, 811
Tru1I	TTAA	4 cut(s)	327, 471, 557, 753
Tru9I	TTAA	4 cut(s)	327, 471, 557, 753
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	7 cut(s)	211, 237, 313, 440, 713, 716, 854
TspDTI	ATGAA	3 cut(s)	232, 259, 562
TspGWI	ACGGA	2 cut(s)	665, 683
TspRI	CASTG	1 cut(s)	156
VspI	ATTAAT	1 cut(s)	753
XapI	RAATTY	3 cut(s)	42, 226, 671
XceI	RCATGY	1 cut(s)	496
XcmI	CCANNNNNNNNNTGG	1 cut(s)	96
XmiI	GTMKAC	1 cut(s)	636
XspI	CTAG	3 cut(s)	77, 368, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.